121 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Slin_0006  CDS  NC_013730  6752  7306  555  hypothetical protein  YP_003384879  decreased coverage  0.00000000384761  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_0007  CDS  NC_013730  7293  8048  756  transposase IS4 family protein  YP_003384880  decreased coverage  0.00000000381041  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_0025  CDS  NC_013730  27147  28484  1338  major facilitator superfamily MFS_1  YP_003384898  decreased coverage  0.00511907  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_0037  CDS  NC_013730  44372  44893  522  hypothetical protein  YP_003384910  decreased coverage  0.00120893  normal  0.0749843  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_0248  CDS  NC_013730  326019  326798  780  O-methyltransferase-like protein  YP_003385112  normal  decreased coverage  0.000493132  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_0249  CDS  NC_013730  326856  328220  1365  hypothetical protein  YP_003385113  normal  0.639683  decreased coverage  0.00118438  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_0250  CDS  NC_013730  328572  330503  1932  DEAD/DEAH box helicase domain protein  YP_003385114  normal  0.173354  decreased coverage  0.00154512  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_0342  CDS  NC_013730  436409  436858  450  Protein of unknown function DUF2141  YP_003385205  decreased coverage  0.00000000103286  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_0440  CDS  NC_013730  546253  547938  1686  RagB/SusD domain protein  YP_003385303  decreased coverage  0.00952484  normal  0.789519  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_0441  CDS  NC_013730  547991  551095  3105  TonB-dependent receptor plug  YP_003385304  decreased coverage  0.000408448  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_0675  CDS  NC_013730  841307  842527  1221  hypothetical protein  YP_003385537  decreased coverage  0.0076119  normal  0.495909  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_0695  CDS  NC_013730  853651  853962  312  hypothetical protein  YP_003385557  decreased coverage  0.000000000804245  normal  0.14512  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_0962  CDS  NC_013730  1170301  1173483  3183  TonB-dependent receptor plug  YP_003385812  unclonable  0.00000104088  decreased coverage  0.00653561  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_0999  CDS  NC_013730  1214550  1215758  1209  protein of unknown function DUF214  YP_003385849  decreased coverage  0.00052376  normal  0.231875  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_1407  CDS  NC_013730  1709164  1711086  1923  putative esterase  YP_003386256  decreased coverage  0.00376031  normal  0.509577  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_1460  CDS  NC_013730  1770575  1771174  600  hypothetical protein  YP_003386309  decreased coverage  0.00443497  normal  0.661074  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_1461  CDS  NC_013730  1771263  1772753  1491  exonuclease V subunit alpha  YP_003386310  decreased coverage  0.00677876  normal  0.63958  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_1492  CDS  NC_013730  1806034  1807572  1539  protein of unknown function UPF0027  YP_003386341  decreased coverage  0.00457459  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_1577  CDS  NC_013730  1906374  1907090  717  hypothetical protein  YP_003386425  normal  0.026846  decreased coverage  0.00608034  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_1578  CDS  NC_013730  1907154  1907654  501  hypothetical protein  YP_003386426  normal  0.0162678  decreased coverage  0.00996174  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_1582  CDS  NC_013730  1910102  1912663  2562  TonB-dependent receptor plug  YP_003386430  decreased coverage  0.00843923  normal  0.229135  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_1621  CDS  NC_013730  1951574  1951984  411  hypothetical protein  YP_003386468  decreased coverage  0.000993233  normal  0.050685  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_1766  CDS  NC_013730  2129058  2130665  1608  DEAD/DEAH box helicase domain protein  YP_003386610  decreased coverage  0.0000000910264  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_1797  CDS  NC_013730  2169577  2172939  3363  Exodeoxyribonuclease V  YP_003386641  decreased coverage  0.00119316  normal  0.701381  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_1798  CDS  NC_013730  2172942  2173814  873  phosphoesterase PA-phosphatase related protein  YP_003386642  decreased coverage  0.000117501  normal  0.5376  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_1871  CDS  NC_013730  2260073  2262457  2385  hypothetical protein  YP_003386715  decreased coverage  0.00897497  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_1986  CDS  NC_013730  2396102  2398228  2127  polyribonucleotide nucleotidyltransferase  YP_003386830  hitchhiker  0.00363303  decreased coverage  0.00215529  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_1987  CDS  NC_013730  2398304  2399167  864  RNA polymerase, sigma 70 subunit, RpoD subfamily  YP_003386831  normal  0.0551332  decreased coverage  0.00228091  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_2043  CDS  NC_013730  2472073  2473989  1917  AMP-dependent synthetase and ligase  YP_003386887  decreased coverage  0.0081773  normal  0.454673  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_2107  CDS  NC_013730  2545026  2549075  4050  two component transcriptional regulator, AraC family  YP_003386941  decreased coverage  0.000288147  normal  0.419692  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_2194  CDS  NC_013730  2660187  2660744  558  hypothetical protein  YP_003387015  normal  0.73675  decreased coverage  0.00108321  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_2195  CDS  NC_013730  2660741  2661310  570  Cupin 2 conserved barrel domain protein  YP_003387016  normal  0.192313  decreased coverage  0.00112961  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_2196  CDS  NC_013730  2661636  2662214  579  Methyltransferase type 12  YP_003387017  normal  0.114606  decreased coverage  0.00107741  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_2208  CDS  NC_013730  2677247  2678569  1323  amidohydrolase  YP_003387029  normal  decreased coverage  0.00166067  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_2227  CDS  NC_013730  2695470  2698184  2715  DNA topoisomerase (ATP-hydrolyzing)  YP_003387047  decreased coverage  0.0006877  normal  0.213389  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_2277  CDS  NC_013730  2759440  2760258  819  Integrase catalytic region  YP_003387097  decreased coverage  0.0000868543  normal  0.0420034  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_2297  CDS  NC_013730  2777287  2777928  642  hypothetical protein  YP_003387117  normal  0.0926139  decreased coverage  0.000164645  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_2298  CDS  NC_013730  2777999  2778967  969  alpha/beta hydrolase fold protein  YP_003387118  normal  0.321032  decreased coverage  0.000193345  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_2299  CDS  NC_013730  2778999  2779661  663  protein of unknown function DUF1648  YP_003387119  normal  0.516258  decreased coverage  0.000180045  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_2353  CDS  NC_013730  2833842  2836130  2289  alpha-1,2-mannosidase  YP_003387173  decreased coverage  0.00545904  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_2389  CDS  NC_013730  2882379  2883332  954  Xylose isomerase domain protein TIM barrel  YP_003387208  decreased coverage  0.00521186  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_2453  CDS  NC_013730  2959182  2960804  1623  RagB/SusD domain protein  YP_003387272  decreased coverage  0.00111761  normal  0.539083  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_2557  CDS  NC_013730  3089607  3090677  1071  efflux transporter, RND family, MFP subunit  YP_003387374  decreased coverage  0.000000027885  normal  0.211023  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_2571  CDS  NC_013730  3108969  3110228  1260  ABC transporter related protein  YP_003387388  decreased coverage  0.00120547  normal  0.533864  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_2742  CDS  NC_013730  3315774  3316967  1194  hypothetical protein  YP_003387556  hitchhiker  0.00000879864  decreased coverage  0.0000000205134  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_2870  CDS  NC_013730  3467007  3467690  684  glycosyl transferase family 2  YP_003387683  decreased coverage  0.000193907  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_2871  CDS  NC_013730  3467731  3469194  1464  hypothetical protein  YP_003387684  decreased coverage  0.000385856  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_2915  CDS  NC_013730  3519246  3520283  1038  hypothetical protein  YP_003387727  decreased coverage  0.00698694  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_3036  CDS  NC_013730  3680686  3683787  3102  TonB-dependent receptor plug  YP_003387846  decreased coverage  0.000276569  normal  0.556141  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_3068  CDS  NC_013730  3717948  3718196  249  hypothetical protein  YP_003387878  decreased coverage  0.00389628  normal  0.531214  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_3069  CDS  NC_013730  3718377  3719903  1527  Aldehyde Dehydrogenase  YP_003387879  decreased coverage  0.00203501  normal  0.959817  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_3297  CDS  NC_013730  3987188  3988369  1182  small-conductance mechanosensitive channel  YP_003388107  decreased coverage  0.00000803764  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_3298  CDS  NC_013730  3988414  3988971  558  GCN5-related N-acetyltransferase  YP_003388108  decreased coverage  0.0000192346  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_3473  CDS  NC_013730  4205594  4206631  1038  3-dehydroquinate synthase  YP_003388280  decreased coverage  0.000213931  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_3637  CDS  NC_013730  4395357  4397861  2505  protein of unknown function DUF214  YP_003388443  decreased coverage  0.000286021  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_3702  CDS  NC_013730  4465262  4465666  405  hypothetical protein  YP_003388503  decreased coverage  0.00000000180279  unclonable  0.0000000000000038565  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_3704  CDS  NC_013730  4466093  4466386  294  hypothetical protein  YP_003388505  decreased coverage  0.00000000141784  hitchhiker  0.000000000000112995  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_3705  CDS  NC_013730  4466449  4467105  657  hypothetical protein  YP_003388506  decreased coverage  0.0000000042348  hitchhiker  0.00000000000253004  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_3706  CDS  NC_013730  4467113  4468048  936  GSCFA domain protein  YP_003388507  decreased coverage  0.00000000684078  hitchhiker  0.0000000000345812  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_3812  CDS  NC_013730  4581743  4582150  408  hypothetical protein  YP_003388604  decreased coverage  0.00000000285676  normal  0.683952  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_3813    NC_013730  4582282  4582473  192      decreased coverage  0.0000000009656  normal  0.820612  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_3814  CDS  NC_013730  4582641  4583720  1080  NHL repeat containing protein  YP_003388605  decreased coverage  0.0000000186749  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_3978  CDS  NC_013730  4778305  4781484  3180  TonB-dependent receptor plug  YP_003388767  decreased coverage  0.00000935862  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_3979  CDS  NC_013730  4781503  4783056  1554  hypothetical protein  YP_003388768  decreased coverage  0.0019717  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4011  CDS  NC_013730  4821771  4822526  756  transposase IS4 family protein  YP_003388800  decreased coverage  0.000000062749  hitchhiker  0.0000247291  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4035  CDS  NC_013730  4851229  4852023  795  NIPSNAP family containing protein  YP_003388824  decreased coverage  0.00000172271  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4122  CDS  NC_013730  4969329  4970054  726  hypothetical protein  YP_003388908  unclonable  0.0000000002243  decreased coverage  0.00000977618  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4123  CDS  NC_013730  4970894  4972009  1116  hypothetical protein  YP_003388909  hitchhiker  0.00000681641  decreased coverage  0.0000116625  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4293  CDS  NC_013730  5190717  5191709  993  hypothetical protein  YP_003389074  decreased coverage  0.000126471  hitchhiker  0.0023033  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4294  CDS  NC_013730  5191715  5192161  447  hypothetical protein  YP_003389075  decreased coverage  0.000133286  hitchhiker  0.00331838  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4295  CDS  NC_013730  5192237  5193040  804  hypothetical protein  YP_003389076  decreased coverage  0.0000868543  hitchhiker  0.0010282  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4298  CDS  NC_013730  5194194  5194676  483  hypothetical protein  YP_003389079  decreased coverage  0.000161377  hitchhiker  0.00151279  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4301  CDS  NC_013730  5196848  5202247  5400  Fibronectin type III domain protein  YP_003389082  normal  0.130951  decreased coverage  0.00087761  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4333  CDS  NC_013730  5253154  5255430  2277  FG-GAP repeat protein  YP_003389114  decreased coverage  0.00966426  normal  0.30257  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4370  CDS  NC_013730  5299528  5301111  1584  hypothetical protein  YP_003389150  decreased coverage  0.000000787252  normal  0.330539  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4382  CDS  NC_013730  5316702  5318198  1497  L-fucose isomerase-like protein  YP_003389162  decreased coverage  0.00643603  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4383  CDS  NC_013730  5318308  5319570  1263  major facilitator superfamily MFS_1  YP_003389163  decreased coverage  0.00326845  normal  0.997814  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4444  CDS  NC_013730  5385376  5388510  3135  Cation/multidrug efflux pump-like protein  YP_003389224  decreased coverage  0.00034162  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4484  CDS  NC_013730  5433177  5434364  1188  translation elongation factor Tu  YP_003389263  decreased coverage  0.00000251988  normal  0.781835  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4485  CDS  NC_013730  5435016  5435552  537  hypothetical protein  YP_003389264  decreased coverage  0.00000138538  normal  0.403857  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4555  CDS  NC_013730  5522197  5524401  2205  TonB-dependent receptor  YP_003389334  decreased coverage  0.000000444386  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4587  CDS  NC_013730  5559026  5560780  1755  glycosyl transferase family 39  YP_003389365  decreased coverage  0.000502234  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4844  CDS  NC_013730  5894993  5898553  3561  hypothetical protein  YP_003389621  decreased coverage  0.0000657531  normal  0.281651  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4845  CDS  NC_013730  5898628  5899140  513  hypothetical protein  YP_003389622  decreased coverage  0.00000000342799  normal  0.474089  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_4847  CDS  NC_013730  5899854  5903513  3660  putative restriction enzyme  YP_003389624  decreased coverage  0.0000521229  normal  0.767237  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_5025  CDS  NC_013730  6122862  6126032  3171  putative transcriptional regulator, Crp/Fnr family  YP_003389801  decreased coverage  0.00524189  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_5089  CDS  NC_013730  6225326  6225862  537  Biopolymer transport protein ExbD/TolR  YP_003389863  decreased coverage  0.00127684  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_5090  CDS  NC_013730  6225867  6226691  825  TonB family protein  YP_003389864  decreased coverage  0.00113498  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_5153  CDS  NC_013730  6292117  6293229  1113  GDP-mannose 4,6-dehydratase  YP_003389924  decreased coverage  0.0000000400711  normal  0.218522  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_5154  CDS  NC_013730  6293296  6293877  582  Sporulation domain protein  YP_003389925  decreased coverage  0.0000000656919  normal  0.256821  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_5252  CDS  NC_013730  6404827  6405732  906  protein of unknown function DUF6 transmembrane  YP_003390022  decreased coverage  0.0000000956104  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_5253  CDS  NC_013730  6405782  6405991  210  hypothetical protein  YP_003390023  decreased coverage  0.0000000155433  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_5413  CDS  NC_013730  6583338  6584075  738  short-chain dehydrogenase/reductase SDR  YP_003390179  decreased coverage  0.0000000035289  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_5497  CDS  NC_013730  6690404  6690835  432  AIG2 family protein  YP_003390262  decreased coverage  0.0000234358  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_5498  CDS  NC_013730  6690955  6691272  318  hypothetical protein  YP_003390263  decreased coverage  0.0000176902  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_5499  CDS  NC_013730  6691345  6691791  447  hypothetical protein  YP_003390264  decreased coverage  0.000025468  normal  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_5720  CDS  NC_013730  6957694  6958800  1107  hypothetical protein  YP_003390484  normal  decreased coverage  0.00463095  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_5721  CDS  NC_013730  6959061  6959402  342  hypothetical protein  YP_003390485  normal  decreased coverage  0.00294987  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_5722  CDS  NC_013730  6959399  6959749  351  hypothetical protein  YP_003390486  normal  decreased coverage  0.00300834  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
Slin_5723  CDS  NC_013730  6959914  6960447  534  transcriptional regulator, TetR family  YP_003390487  normal  decreased coverage  0.00322286  Spirosoma linguale DSM 74  Bacteria 
 
 
-
 
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