93 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
YPK_0225  CDS  NC_010465  263453  263974  +  522  shikimate kinase I  YP_001718991  decreased coverage  0.000000000752096  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0277  CDS  NC_010465  313972  316080  +  2109  elongation factor G  YP_001719043  decreased coverage  0.0000112388  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0297  CDS  NC_010465  326088  326480  +  393  30S ribosomal protein S8  YP_001719063  decreased coverage  0.00000000747182  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0323  CDS  NC_010465  343731  343850  +  120  hypothetical protein  YP_001719089  decreased coverage  0.000000000350586  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0330  CDS  NC_010465  353606  353740  -  135  hypothetical protein  YP_001719094  decreased coverage  0.000010692  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0332  CDS  NC_010465  354371  355555  +  1185  elongation factor Tu  YP_001719095  decreased coverage  0.000132948  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0427  CDS  NC_010465  466708  467916  -  1209  transposase mutator type  YP_001719183  decreased coverage  0.00329499  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0453  CDS  NC_010465  493086  494051  -  966  tRNA-dihydrouridine synthase B  YP_001719209  decreased coverage  0.000154281  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0523  CDS  NC_010465  571927  573054  +  1128  AFG1 family ATPase  YP_001719279  decreased coverage  0.00000232389  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0636  CDS  NC_010465  695036  695251  -  216  30S ribosomal protein S21  YP_001719392  decreased coverage  0.0000000000159667  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0642  CDS  NC_010465  700704  701324  -  621  putative signal transduction protein  YP_001719398  decreased coverage  0.00000000817142  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0706  CDS  NC_010465  768563  769333  -  771  flagellar biosynthesis protein FliP  YP_001719460  decreased coverage  0.00108182  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0707  CDS  NC_010465  769330  769743  -  414  flagellar motor switch protein FliN  YP_001719461  decreased coverage  0.00348203  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0853  CDS  NC_010465  975832  976911  +  1080  fructose-bisphosphate aldolase  YP_001719607  decreased coverage  0.000607059  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_0861  CDS  NC_010465  984740  985069  -  330  Z-ring-associated protein  YP_001719615  decreased coverage  0.000000000455122  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1066  CDS  NC_010465  1204135  1204860  +  726  30S ribosomal protein S2  YP_001719820  decreased coverage  0.00351639  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1076  CDS  NC_010465  1215189  1216211  +  1023  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase  YP_001719830  decreased coverage  0.0000102577  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1077  CDS  NC_010465  1216369  1216899  +  531  (3R)-hydroxymyristoyl-ACP dehydratase  YP_001719831  decreased coverage  0.000000662978  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1097  CDS  NC_010465  1235245  1235811  +  567  D,D-heptose 1,7-bisphosphate phosphatase  YP_001719851  decreased coverage  0.00000000127876  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1123  CDS  NC_010465  1262380  1262718  -  339  hypothetical protein  YP_001719874  decreased coverage  0.00000000310179  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1151  CDS  NC_010465  1287946  1288473  +  528  replication initiation regulator SeqA  YP_001719902  decreased coverage  0.00000000155499  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1266  CDS  NC_010465  1395482  1395703  +  222  hypothetical protein  YP_001720017  decreased coverage  0.0000000000232734  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1267  CDS  NC_010465  1395703  1395828  +  126  hypothetical protein  YP_001720018  decreased coverage  0.00000000001074  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1274  CDS  NC_010465  1402239  1403012  +  774  RNA methyltransferase  YP_001720025  decreased coverage  0.00000271019  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1275  CDS  NC_010465  1403105  1403662  +  558  DNA-binding transcriptional regulator IscR  YP_001720026  decreased coverage  0.000014653  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1431  CDS  NC_010465  1580900  1581886  +  987  cell division protein ZipA  YP_001720178  decreased coverage  0.00000000115639  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1432  CDS  NC_010465  1581977  1583989  +  2013  NAD-dependent DNA ligase LigA  YP_001720179  decreased coverage  0.0000269504  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1520  CDS  NC_010465  1681956  1683179  +  1224  3-oxoacyl-(acyl carrier protein) synthase I  YP_001720266  decreased coverage  0.00000000339605  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1545  CDS  NC_010465  1706860  1707408  +  549  NUDIX hydrolase  YP_001720291  decreased coverage  0.0000000233987  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1707  CDS  NC_010465  1894972  1896174  +  1203  outer membrane-specific lipoprotein transporter subunit LolC  YP_001720453  decreased coverage  0.0000000104309  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1739  CDS  NC_010465  1924556  1927756  -  3201  beta-D-galactosidase  YP_001720485  decreased coverage  0.000361485  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1784  CDS  NC_010465  1981388  1982269  +  882  heat shock protein HtpX  YP_001720528  decreased coverage  0.000381435  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1813  CDS  NC_010465  2012337  2013221  -  885  ABC-3 protein  YP_001720557  decreased coverage  0.00569074  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1820  CDS  NC_010465  2018687  2020615  +  1929  threonyl-tRNA synthetase  YP_001720564  decreased coverage  0.000360561  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_1821  CDS  NC_010465  2020820  2021170  +  351  translation initiation factor IF-3  YP_001720565  decreased coverage  0.00000426207  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2012  CDS  NC_010465  2240379  2241080  +  702  electron transport complex RsxE subunit  YP_001720752  decreased coverage  0.00017811  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2027  CDS  NC_010465  2255767  2256078  -  312  hypothetical protein  YP_001720767  decreased coverage  0.0000138978  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2088  CDS  NC_010465  2316138  2318066  -  1929  DNA topoisomerase III  YP_001720827  decreased coverage  0.00112487  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2096  CDS  NC_010465  2325008  2326003  +  996  glyceraldehyde-3-phosphate dehydrogenase, type I  YP_001720835  decreased coverage  0.000000144156  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2121  CDS  NC_010465  2351965  2352651  +  687  septum formation inhibitor  YP_001720860  decreased coverage  0.000192978  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2140  CDS  NC_010465  2371491  2372447  -  957  high-affinity zinc transporter periplasmic component  YP_001720879  decreased coverage  0.0000000251275  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2141  CDS  NC_010465  2372520  2373281  +  762  high-affinity zinc transporter ATPase  YP_001720880  decreased coverage  0.00000000523948  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2276  CDS  NC_010465  2529944  2530684  +  741  pili assembly chaperone  YP_001721006  decreased coverage  0.00485473  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2291  CDS  NC_010465  2540460  2540798  -  339  transposase  YP_001721021  decreased coverage  0.0059921  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2311  CDS  NC_010465  2555823  2556014  +  192  hypothetical protein  YP_001721041  decreased coverage  0.0000000363539  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2312  CDS  NC_010465  2556027  2556230  +  204  putative DNA-binding protein  YP_001721042  decreased coverage  0.000000029822  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2354  CDS  NC_010465  2587516  2588064  -  549  phosphatidylglycerophosphate synthetase  YP_001721084  decreased coverage  0.0000305434  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2649  CDS  NC_010465  2911078  2912160  +  1083  porin  YP_001721379  decreased coverage  0.0000000040387  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2668  CDS  NC_010465  2936501  2938174  -  1674  30S ribosomal protein S1  YP_001721398  decreased coverage  0.00000112537  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2685  CDS  NC_010465  2960129  2964061  -  3933  cell divisionFtsK/SpoIIIE  YP_001721415  decreased coverage  0.00501186  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2690  CDS  NC_010465  2970579  2971289  +  711  leucyl/phenylalanyl-tRNA--protein transferase  YP_001721420  decreased coverage  0.00000398138  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2692  CDS  NC_010465  2972071  2974347  -  2277  ATP-dependent Clp protease ATP-binding subunit  YP_001721422  decreased coverage  0.0000885828  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2720  CDS  NC_010465  3001413  3002504  -  1092  periplasmic binding protein  YP_001721450  decreased coverage  0.00000000254593  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2765  CDS  NC_010465  3050949  3051404  +  456  NUDIX hydrolase  YP_001721495  decreased coverage  0.000000522672  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2797  CDS  NC_010465  3088213  3088440  +  228  hypothetical protein  YP_001721527  decreased coverage  0.000000489425  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2798  CDS  NC_010465  3088468  3090264  +  1797  sulfatase  YP_001721528  decreased coverage  0.000743938  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2954  CDS  NC_010465  3252963  3253772  -  810  tol-pal system protein YbgF  YP_001721681  decreased coverage  0.000000000655346  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2955  CDS  NC_010465  3253782  3254288  -  507  peptidoglycan-associated outer membrane lipoprotein  YP_001721682  decreased coverage  0.0000000000883314  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2974  CDS  NC_010465  3274531  3275109  -  579  heat shock protein GrpE  YP_001721701  decreased coverage  0.000000000364467  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_2990  CDS  NC_010465  3284454  3284981  +  528  flavodoxin FldA  YP_001721717  decreased coverage  0.000344079  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3154  CDS  NC_010465  3449100  3449822  +  723  UDP-2,3-diacylglucosamine hydrolase  YP_001721878  decreased coverage  0.0000000590345  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3209  CDS  NC_010465  3511951  3512409  +  459  transposase IS200-family protein  YP_001721931  decreased coverage  0.000000115009  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3235  CDS  NC_010465  3538871  3540175  -  1305  trigger factor  YP_001721957  decreased coverage  0.00052643  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3264  CDS  NC_010465  3568401  3569525  -  1125  queuine tRNA-ribosyltransferase  YP_001721986  decreased coverage  0.000400897  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3344  CDS  NC_010465  3666148  3667503  +  1356  phosphatidylserine synthase  YP_001722066  decreased coverage  0.00469023  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3449  CDS  NC_010465  3783755  3785989  -  2235  GDP/GTP pyrophosphokinase  YP_001722169  decreased coverage  0.00000378764  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3469  CDS  NC_010465  3810823  3812007  +  1185  glutamyl-Q tRNA(Asp) synthetase  YP_001722189  decreased coverage  0.0000116518  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3504  CDS  NC_010465  3850474  3851226  +  753  hypothetical protein  YP_001722224  decreased coverage  0.00000650274  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3512  CDS  NC_010465  3857320  3858243  -  924  UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  YP_001722232  decreased coverage  0.00000014804  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3569  CDS  NC_010465  3932557  3933390  -  834  Dna-J like membrane chaperone protein  YP_001722289  decreased coverage  0.000000000771944  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3590  CDS  NC_010465  3957343  3957606  +  264  30S ribosomal protein S20  YP_001722310  decreased coverage  0.000000579115  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3678  CDS  NC_010465  4062486  4063580  -  1095  permease YjgP/YjgQ family protein  YP_001722398  decreased coverage  0.0000000432318  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3736  CDS  NC_010465  4128536  4130479  -  1944  ATP-dependent metalloprotease  YP_001722456  decreased coverage  0.000000470783  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3757  CDS  NC_010465  4145797  4146108  -  312  50S ribosomal protein L21  YP_001722477  decreased coverage  0.0000000620592  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3855  CDS  NC_010465  4246658  4248013  -  1356  replicative DNA helicase  YP_001722573  decreased coverage  0.00000204415  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3876  CDS  NC_010465  4276480  4277664  -  1185  stress protein  YP_001722594  decreased coverage  0.0000202647  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_3889  CDS  NC_010465  4288884  4290914  +  2031  TonB-dependent heme/hemoglobin receptor family protein  YP_001722607  decreased coverage  0.0000356309  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_4033  CDS  NC_010465  4448225  4449307  -  1083  undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase  YP_001722748  decreased coverage  0.000047197  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_4131  CDS  NC_010465  4563793  4564281  -  489  periplasmic stress adaptor protein CpxP  YP_001722843  decreased coverage  0.00000337772  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_4132  CDS  NC_010465  4564455  4565153  +  699  DNA-binding transcriptional regulator CpxR  YP_001722844  decreased coverage  0.0000000494358  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_4133  CDS  NC_010465  4565150  4566526  +  1377  two-component sensor protein  YP_001722845  decreased coverage  0.000603711  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_4152  CDS  NC_010465  4584852  4585661  -  810  formamidopyrimidine-DNA glycosylase  YP_001722864  decreased coverage  0.000000225921  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_4177  CDS  NC_010465  4605394  4605669  +  276  DNA-directed RNA polymerase subunit omega  YP_001722889  decreased coverage  0.00539722  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_4195  CDS  NC_010465  4629710  4632508  -  2799  DNA polymerase I  YP_001722907  decreased coverage  0.00580719  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_4206  CDS  NC_010465  4643733  4644422  +  690  GntR domain-containing protein  YP_001722915  decreased coverage  0.0000000481189  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_4220  CDS  NC_010465  4659293  4660117  +  825  F0F1 ATP synthase subunit A  YP_001722929  decreased coverage  0.0000000114872  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_4250  CDS  NC_010465  4689109  4689249  -  141  hypothetical protein  YP_001722959  decreased coverage  0.000000000106121  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_R0005  tRNA  NC_010465  353778  353853  +  76  tRNA-Thr    decreased coverage  0.00000832804  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_R0006  tRNA  NC_010465  353872  353956  +  85  tRNA-Tyr    decreased coverage  0.00000863158  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_R0015  tRNA  NC_010465  1587753  1587828  +  76  tRNA-Val    decreased coverage  0.00000000129516  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_R0016  tRNA  NC_010465  1587865  1587940  +  76  tRNA-Val    decreased coverage  0.00000000137967  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_R0042  tRNA  NC_010465  4433682  4433758  -  77  tRNA-Arg    decreased coverage  0.00513283  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
-
 
YPK_R0085  rRNA  NC_010465  1236260  1237794  +  1535  16S ribosomal RNA    decreased coverage  0.000000351585  n/a    Yersinia pseudotuberculosis YPIII  Bacteria 
 
 
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