65 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Elen_0001  CDS  NC_013204  67  1182  +  1116  transcriptional regulator, TrmB  YP_003180385  decreased coverage  0.000000656108  hitchhiker  0.000000126577  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_0002  CDS  NC_013204  1306  2868  +  1563  chromosomal replication initiator protein DnaA  YP_003180386  decreased coverage  0.00000222997  hitchhiker  0.00000014852  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_0005  CDS  NC_013204  5609  6184  +  576  hypothetical protein  YP_003180389  decreased coverage  0.000000114784  hitchhiker  0.000000316421  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_0022  CDS  NC_013204  31390  31683  +  294  ribosomal protein S6  YP_003180405  decreased coverage  0.00000004173  normal  0.882806  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_0023  CDS  NC_013204  31742  32197  +  456  single-strand binding protein  YP_003180406  decreased coverage  0.0000000813945  normal  1  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_0311  CDS  NC_013204  406105  407577  +  1473  ABC transporter related  YP_003180691  decreased coverage  0.00385444  normal  1  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_0422  CDS  NC_013204  541107  543527  +  2421  anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family  YP_003180800  normal  0.0580651  decreased coverage  0.000000000595111  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_0582  CDS  NC_013204  737458  737943  +  486  hypothetical protein  YP_003180956  decreased coverage  0.000000112587  normal  1  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_0623  CDS  NC_013204  796231  797538  -  1308  transposase mutator type  YP_003180997  decreased coverage  0.00824181  normal  0.550173  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_0672  CDS  NC_013204  849922  851037  +  1116  agmatine deiminase  YP_003181043  normal  0.915937  decreased coverage  0.00000489111  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_0738  CDS  NC_013204  930794  931474  -  681  two component transcriptional regulator, winged helix family  YP_003181106  decreased coverage  0.0000482292  normal  1  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_0739  CDS  NC_013204  931653  931859  +  207  hypothetical protein  YP_003181107  decreased coverage  0.0000526566  normal  1  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_0740  CDS  NC_013204  931908  932837  +  930  hypothetical protein  YP_003181108  decreased coverage  0.000338455  normal  1  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_0774  CDS  NC_013204  971650  972552  -  903  4Fe-4S ferredoxin iron-sulfur binding domain protein  YP_003181139  decreased coverage  0.00763219  normal  1  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_0942  CDS  NC_013204  1145707  1147314  -  1608  GMP synthase, large subunit  YP_003181303  decreased coverage  0.00705801  normal  0.0196156  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_0958  CDS  NC_013204  1165733  1166104  +  372  ribosomal protein S12  YP_003181319  decreased coverage  0.00000110265  hitchhiker  0.00000000399802  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_0959  CDS  NC_013204  1166221  1166691  +  471  ribosomal protein S7  YP_003181320  decreased coverage  0.0000015006  hitchhiker  0.000000000143074  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_0960  CDS  NC_013204  1166707  1168824  +  2118  translation elongation factor G  YP_003181321  hitchhiker  0.000224995  decreased coverage  0.000000000000793105  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1077  CDS  NC_013204  1301576  1302469  +  894  hypothetical protein  YP_003181437  decreased coverage  0.000000260914  hitchhiker  0.0000000000012089  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1088  CDS  NC_013204  1314539  1316179  +  1641  transcription termination factor Rho  YP_003181448  decreased coverage  0.00846053  hitchhiker  0.0000000000000541512  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1266  CDS  NC_013204  1520661  1522823  +  2163  ABC transporter related  YP_003181625  decreased coverage  0.000152073  normal  1  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1288  CDS  NC_013204  1543913  1545055  -  1143  aldo/keto reductase  YP_003181646  decreased coverage  0.00132555  normal  1  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1289  CDS  NC_013204  1545147  1545809  -  663  endonuclease III  YP_003181647  decreased coverage  0.00130293  normal  1  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1423  CDS  NC_013204  1695907  1697469  +  1563  protein of unknown function DUF6 transmembrane  YP_003181781  decreased coverage  0.00000166292  normal  1  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1558  CDS  NC_013204  1853569  1854108  +  540  lipoprotein signal peptidase  YP_003181915  normal  0.714607  decreased coverage  0.00460941  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1609  CDS  NC_013204  1906517  1908031  -  1515  ABC transporter related  YP_003181966  decreased coverage  0.0000030441  hitchhiker  0.000000000000475647  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1610  CDS  NC_013204  1908425  1908691  -  267  hypothetical protein  YP_003181967  decreased coverage  0.0000000486292  hitchhiker  0.00000000000000783078  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1611  CDS  NC_013204  1908816  1909454  +  639  SOS-response transcriptional repressor, LexA  YP_003181968  decreased coverage  0.000000160494  unclonable  3.1983e-16  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1618  CDS  NC_013204  1916952  1917629  -  678  regulatory protein RecX  YP_003181975  decreased coverage  0.0000117054  hitchhiker  0.000000000911842  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1625  CDS  NC_013204  1925956  1927728  -  1773  beta-lactamase domain protein  YP_003181982  decreased coverage  0.000210591  hitchhiker  0.00000143957  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1661  CDS  NC_013204  1963120  1963428  -  309  hypothetical protein  YP_003182018  decreased coverage  0.0000000371749  hitchhiker  0.0000841753  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1662  CDS  NC_013204  1963621  1964346  -  726  orotidine 5'-phosphate decarboxylase  YP_003182019  decreased coverage  0.000000183413  hitchhiker  0.000549225  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1671  CDS  NC_013204  1971893  1973407  -  1515  carbamoyl-phosphate synthase, small subunit  YP_003182026  decreased coverage  0.00077424  hitchhiker  0.00974752  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1734  CDS  NC_013204  2041277  2042422  -  1146  ribonuclease D  YP_003182088  normal  0.312389  decreased coverage  0.00186691  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1735  CDS  NC_013204  2042498  2043409  +  912  diacylglycerol kinase catalytic region  YP_003182089  normal  0.137383  decreased coverage  0.00310511  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1929  CDS  NC_013204  2260414  2261919  -  1506  trigger factor  YP_003182282  decreased coverage  0.0000213413  normal  0.0186919  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1950  CDS  NC_013204  2288356  2288598  +  243  glutaredoxin  YP_003182303  decreased coverage  0.0000181605  normal  0.405053  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1957  CDS  NC_013204  2296044  2296529  +  486  ybaK/ebsC protein  YP_003182310  decreased coverage  0.000134669  normal  1  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1958  CDS  NC_013204  2296626  2298122  -  1497  ErfK/YbiS/YcfS/YnhG family protein  YP_003182311  decreased coverage  0.00199371  normal  1  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1979  CDS  NC_013204  2318079  2320277  -  2199  metal dependent phosphohydrolase  YP_003182332  decreased coverage  0.0000184282  normal  1  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_1985  CDS  NC_013204  2329460  2329909  -  450  Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ  YP_003182338  decreased coverage  0.00660772  normal  1  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2085  CDS  NC_013204  2452117  2452965  -  849  protein of unknown function DUF152  YP_003182437  hitchhiker  0.0000113005  decreased coverage  0.0000000000000053007  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2164  CDS  NC_013204  2546237  2546635  -  399  ribosomal protein S8  YP_003182516  decreased coverage  0.00791541  normal  0.949084  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2239  CDS  NC_013204  2632306  2632776  -  471  transcription elongation factor GreA  YP_003182589  decreased coverage  0.000000131275  normal  0.39945  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2240  CDS  NC_013204  2632909  2633172  -  264  twin-arginine translocation protein, TatA/E family subunit  YP_003182590  decreased coverage  0.0000000705508  normal  0.483483  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2585  CDS  NC_013204  3024164  3024862  -  699  hypothetical protein  YP_003182927  decreased coverage  0.00000203897  normal  0.20088  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2595  CDS  NC_013204  3034403  3034651  +  249  hypothetical protein  YP_003182936  hitchhiker  0.00100615  decreased coverage  0.000000105284  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2596  CDS  NC_013204  3034746  3034988  +  243  hypothetical protein  YP_003182937  hitchhiker  0.00127273  decreased coverage  0.0000000997476  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2597  CDS  NC_013204  3034985  3035389  +  405  hypothetical protein  YP_003182938  hitchhiker  0.00018829  decreased coverage  0.000000112855  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2598  CDS  NC_013204  3035386  3035811  +  426  endodeoxyribonuclease RusA  YP_003182939  decreased coverage  0.0000397063  decreased coverage  0.000000107809  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2599  CDS  NC_013204  3035804  3036319  +  516  hypothetical protein  YP_003182940  decreased coverage  0.0000535774  decreased coverage  0.000000106926  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2600  CDS  NC_013204  3036367  3036687  +  321  hypothetical protein  YP_003182941  decreased coverage  0.0000359903  decreased coverage  0.00000010285  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2601  CDS  NC_013204  3036680  3037735  +  1056  hypothetical protein  YP_003182942  hitchhiker  0.0000831419  decreased coverage  0.000000147354  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2602  CDS  NC_013204  3037725  3038258  +  534  ERF family protein  YP_003182943  hitchhiker  0.00578312  decreased coverage  0.0000000232588  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2603  CDS  NC_013204  3038258  3038605  +  348  hypothetical protein  YP_003182944  normal  0.0666557  decreased coverage  0.0000000804473  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2604  CDS  NC_013204  3038602  3039108  +  507  single-strand binding protein  YP_003182945  normal  0.137931  decreased coverage  0.0000000924052  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2605  CDS  NC_013204  3039119  3039814  +  696  hypothetical protein  YP_003182946  normal  0.272748  decreased coverage  0.000000106926  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2606  CDS  NC_013204  3039843  3040478  +  636  DNA replication protein-like protein  YP_003182947  normal  1  decreased coverage  0.0000000882358  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2805  CDS  NC_013204  3254586  3255212  -  627  ribosomal protein S4  YP_003183141  unclonable  0.00000000815748  decreased coverage  0.00000000563481  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_2806  CDS  NC_013204  3255232  3255630  -  399  ribosomal protein S11  YP_003183142  unclonable  0.00000000365846  decreased coverage  0.00000000490593  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_3074  CDS  NC_013204  3574207  3575229  -  1023  hydrogenase expression/formation protein HypE  YP_003183406  decreased coverage  0.000468886  normal  1  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_3113  CDS  NC_013204  3622688  3623332  +  645  hypothetical protein  YP_003183444  normal  0.0198257  decreased coverage  0.000000000549936  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_3122  CDS  NC_013204  3630820  3631053  -  234  protein of unknown function DUF37  YP_003183453  decreased coverage  0.0000000566659  hitchhiker  0.0000000540295  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_3123  CDS  NC_013204  3631065  3631391  -  327  ribonuclease P protein component  YP_003183454  decreased coverage  0.0000000870513  hitchhiker  0.0000000610775  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Elen_R0031  tRNA  NC_013204  2267796  2267872  +  77  tRNA-His    decreased coverage  0.00000176121  normal  0.0395456  Eggerthella lenta DSM 2243  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>