49 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Ccur_00090  CDS  NC_013170  9818  10384  +  567  DnaJ-class molecular chaperone with C-terminal Zn finger domain protein  YP_003150426  decreased coverage  0.000000577913  normal  1  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_00100  CDS  NC_013170  10384  12198  +  1815  GTP-binding protein TypA/BipA  YP_003150427  decreased coverage  0.0000172571  normal  1  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_00300  CDS  NC_013170  38690  44140  +  5451  conserved repeat protein (List_Bact_rpt)  YP_003150445  normal  0.0283714  decreased coverage  0.000000000390455  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_00310  CDS  NC_013170  44311  44553  +  243  SSU ribosomal protein S16P  YP_003150446  unclonable  0.00000000491979  decreased coverage  0.00000000000378635  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_00480  CDS  NC_013170  63325  65145  -  1821  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  YP_003150463  decreased coverage  0.00118843  normal  1  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_00630  CDS  NC_013170  79236  79358  -  123  hypothetical protein  YP_003150478  decreased coverage  0.0000364486  normal  1  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_00640  CDS  NC_013170  79357  79545  +  189  dissimilatory sulfite reductase (desulfoviridin), alpha/beta subunit  YP_003150479  decreased coverage  0.0000382755  normal  1  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_00810  CDS  NC_013170  101455  102897  +  1443  Cna protein B-type domain-containing protein  YP_003150496  decreased coverage  0.00133256  normal  1  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_01690  CDS  NC_013170  204214  205185  +  972  hypothetical protein  YP_003150582  unclonable  0.0000000277676  decreased coverage  0.0000000000000177257  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_03650  CDS  NC_013170  423929  425719  +  1791  ABC-type multidrug transport system, ATPase and permease component  YP_003150772  unclonable  0.000000696051  decreased coverage  0.00250447  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_03800  CDS  NC_013170  438977  439516  +  540  predicted RNA-binding protein containing a PIN domain protein  YP_003150786  decreased coverage  0.000000618341  normal  0.163612  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_04750  CDS  NC_013170  563586  564317  +  732  hemolysin A  YP_003150879  decreased coverage  0.000612241  normal  1  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_04760  CDS  NC_013170  564534  566255  -  1722  predicted xylanase/chitin deacetylase  YP_003150880  decreased coverage  0.000622168  normal  1  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_05280  CDS  NC_013170  623935  625218  +  1284  Na+/H+ antiporter NhaD-like permease  YP_003150931  decreased coverage  0.00452753  normal  1  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_05410  CDS  NC_013170  640399  641337  +  939  Protein of unknown function DUF88  YP_003150944  decreased coverage  0.00000245308  normal  1  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_05740  CDS  NC_013170  675998  676351  +  354  LSU ribosomal protein L20P  YP_003150974  decreased coverage  0.00000012199  normal  0.0122872  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_05980  CDS  NC_013170  702368  703762  +  1395  GTP-binding protein Obg/CgtA  YP_003150997  hitchhiker  0.00718326  decreased coverage  0.00000000000109453  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_06240  CDS  NC_013170  730817  731482  +  666  predicted Zn-dependent protease  YP_003151022  decreased coverage  0.000000728201  hitchhiker  0.0055368  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_06500  CDS  NC_013170  761312  762037  +  726  hypothetical protein  YP_003151047  decreased coverage  0.0000280748  normal  0.453475  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_06510  tRNA  NC_013170  762100  762175  +  76  tRNA-Arg    decreased coverage  0.0000338303  normal  0.349036  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_06760  CDS  NC_013170  788248  788997  -  750  glucosamine-6-phosphate isomerase  YP_003151068  decreased coverage  0.000000583825  normal  0.599232  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_07000  CDS  NC_013170  811813  812157  +  345  LSU ribosomal protein L19P  YP_003151092  decreased coverage  0.00000223468  normal  0.416824  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_07010  CDS  NC_013170  812323  813111  +  789  ribonuclease HII  YP_003151093  decreased coverage  0.00000706526  normal  0.43338  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_07160  CDS  NC_013170  832131  833687  +  1557  phosphoglyceromutase  YP_003151108  decreased coverage  0.0000681979  normal  1  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_07190  tRNA  NC_013170  834606  834681  +  76  tRNA-Gly    decreased coverage  0.00000170104  normal  0.886703  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_07200  tRNA  NC_013170  834746  834819  +  74  tRNA-Cys    decreased coverage  0.00000170104  normal  0.867766  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_07210  tRNA  NC_013170  834912  834986  +  75  tRNA-Val    decreased coverage  0.00000170104  normal  0.87743  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_07220  CDS  NC_013170  835228  837159  +  1932  NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, MnhA subunit  YP_003151110  decreased coverage  0.000172038  normal  0.975039  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_07530  CDS  NC_013170  866806  869253  -  2448  DNA segregation ATPase, FtsK/SpoIIIE family  YP_003151141  decreased coverage  0.00736792  normal  0.793851  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_07540  CDS  NC_013170  869327  871222  -  1896  predicted hydrolase of the metallo-beta-lactamase superfamily  YP_003151142  decreased coverage  0.000160452  normal  1  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_07870  CDS  NC_013170  901504  902094  -  591  pyrimidine operon attenuation protein/uracil phosphoribosyltransferase  YP_003151173  decreased coverage  0.00012346  normal  0.500468  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_08410  CDS  NC_013170  961400  962326  +  927  transcriptional regulator  YP_003151225  decreased coverage  0.00913981  normal  0.237754  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_08670  CDS  NC_013170  993802  994839  +  1038  branched-chain amino acid aminotransferase  YP_003151251  decreased coverage  0.00341409  normal  0.322346  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_08900  CDS  NC_013170  1021508  1022581  -  1074  peptide chain release factor 1  YP_003151273  decreased coverage  0.000087001  normal  0.899711  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_09030  CDS  NC_013170  1038234  1039877  -  1644  trigger factor  YP_003151284  decreased coverage  0.001374  normal  0.491462  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_09150  CDS  NC_013170  1051204  1052133  -  930  hypothetical protein  YP_003151295  decreased coverage  0.000277277  normal  0.476622  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_09710  CDS  NC_013170  1112365  1113567  -  1203  translation elongation factor 1A (EF-1A/EF-Tu)  YP_003151347  decreased coverage  0.00000220871  hitchhiker  0.00000138274  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_09730  tRNA  NC_013170  1113835  1113910  -  76  tRNA-Thr    decreased coverage  0.0000000907355  hitchhiker  0.0000119481  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_09740  tRNA  NC_013170  1113916  1114000  -  85  tRNA-Tyr    decreased coverage  0.0000000943193  hitchhiker  0.0000123318  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_09750  CDS  NC_013170  1114187  1115749  -  1563  sodium/proline symporter  YP_003151348  decreased coverage  0.000003829  hitchhiker  0.000045945  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_09870  CDS  NC_013170  1127296  1127481  -  186  SSU ribosomal protein S14P  YP_003151360  decreased coverage  0.000893021  hitchhiker  0.0000177439  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_10020  CDS  NC_013170  1137640  1138260  -  621  LSU ribosomal protein L3P  YP_003151375  decreased coverage  0.000000402835  hitchhiker  0.00000000318342  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_10030  CDS  NC_013170  1138275  1138583  -  309  SSU ribosomal protein S10P  YP_003151376  decreased coverage  0.00000017716  hitchhiker  0.00000000188362  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_10040  CDS  NC_013170  1138627  1140729  -  2103  translation elongation factor 2 (EF-2/EF-G)  YP_003151377  decreased coverage  0.0000170843  decreased coverage  0.0000000000839395  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_10050  CDS  NC_013170  1140744  1141214  -  471  SSU ribosomal protein S7P  YP_003151378  decreased coverage  0.000000294086  hitchhiker  0.00000000101858  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_10940  CDS  NC_013170  1242492  1244111  -  1620  trypsin-like serine protease with C-terminal PDZ domain protein  YP_003151467  decreased coverage  0.0000345024  normal  1  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_11090  CDS  NC_013170  1263167  1265089  -  1923  drug resistance transporter, EmrB/QacA subfamily  YP_003151481  decreased coverage  0.000431734  normal  1  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_12790  CDS  NC_013170  1446576  1447931  -  1356  citrate synthase  YP_003151640  decreased coverage  0.0027871  normal  1  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_13240  CDS  NC_013170  1491590  1492060  -  471  transcription elongation factor GreA  YP_003151684  decreased coverage  0.00714364  normal  1  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>