22 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Pnec_0016  CDS  NC_010531  16688  17563  +  876  F0F1 ATP synthase subunit A  YP_001796960  decreased coverage  0.0000000000260212  hitchhiker  0.000221362  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0047  CDS  NC_010531  54074  56176  +  2103  elongation factor G  YP_001796989  hitchhiker  0.0000000029839  decreased coverage  6.96868e-24  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0048  CDS  NC_010531  56222  57412  +  1191  elongation factor Tu  YP_001796990  unclonable  0.0000000000026192  decreased coverage  9.37064e-25  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0049  CDS  NC_010531  57529  57840  +  312  30S ribosomal protein S10  YP_001796991  unclonable  0.0000000000000291739  decreased coverage  2.20907e-25  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0050  CDS  NC_010531  58039  58695  +  657  50S ribosomal protein L3  YP_001796992  unclonable  0.000000000000105165  decreased coverage  1.58179e-26  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0096  CDS  NC_010531  91412  92200  +  789  protein of unknown function DUF140  YP_001797032  decreased coverage  0.0000150492  normal  1  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0097  CDS  NC_010531  92222  92704  +  483  Mammalian cell entry related domain protein  YP_001797033  decreased coverage  0.0000148019  normal  1  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0186  CDS  NC_010531  167672  169012  +  1341  cell division protein FtsZ  YP_001797105  decreased coverage  0.000000000103682  normal  0.437906  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0223  CDS  NC_010531  204624  205808  +  1185  ribonucleotide-diphosphate reductase subunit beta  YP_001797134  decreased coverage  0.0000000000260212  normal  0.80957  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0224  CDS  NC_010531  206141  206371  +  231  hypothetical protein  YP_001797135  decreased coverage  0.000000000000558305  normal  1  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0330  CDS  NC_010531  292044  293519  +  1476  mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase  YP_001797236  decreased coverage  0.00801876  normal  1  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0467  CDS  NC_010531  415171  417327  +  2157  excinuclease ABC subunit B  YP_001797348  decreased coverage  0.00244529  normal  1  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0509  CDS  NC_010531  460022  460732  +  711  uridylate kinase  YP_001797386  decreased coverage  0.00424433  normal  0.390175  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0549  CDS  NC_010531  488837  489880  -  1044  hypothetical protein  YP_001797423  decreased coverage  0.00564002  normal  1  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0661  CDS  NC_010531  573363  574064  -  702  protein of unknown function UPF0005  YP_001797512  decreased coverage  0.00649456  normal  1  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0994  CDS  NC_010531  863250  864101  -  852  PHP domain protein  YP_001797791  decreased coverage  0.000000000016176  normal  1  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0995  CDS  NC_010531  864111  865214  -  1104  AFG1-family ATPase  YP_001797792  decreased coverage  0.0000000000410235  normal  1  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_1088  CDS  NC_010531  944921  947617  -  2697  pyruvate dehydrogenase subunit E1  YP_001797876  decreased coverage  0.00000843212  normal  0.805293  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_1315  CDS  NC_010531  1138272  1140980  -  2709  DNA gyrase subunit A  YP_001798049  decreased coverage  0.000000857491  decreased coverage  3.4629599999999997e-25  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_1465  CDS  NC_010531  1267116  1267319  +  204  cold-shock DNA-binding domain protein  YP_001798173  decreased coverage  0.000499386  normal  0.887495  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_1550  CDS  NC_010531  1350149  1350298  -  150  hypothetical protein  YP_001798246  decreased coverage  0.0000000000214674  normal  1  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_1786  CDS  NC_010531  1559901  1560167  -  267  ribonuclease P protein component  YP_001798452  decreased coverage  0.00873634  normal  0.269428  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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