50 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Oter_0032  CDS  NC_010571  41749  43743  +  1995  peptidyl-prolyl cis-trans isomerase cyclophilin type  YP_001816924  normal  0.468114  decreased coverage  0.00512066  Opitutus terrae PB90-1  Bacteria 
 
 
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Oter_0033    NC_010571  43880  44472  -  593      normal  1  decreased coverage  0.00363799  Opitutus terrae PB90-1  Bacteria 
 
 
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Oter_0034  CDS  NC_010571  44472  45494  -  1023  hypothetical protein  YP_001816925  normal  0.605387  decreased coverage  0.00440217  Opitutus terrae PB90-1  Bacteria 
 
 
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Oter_0365  CDS  NC_010571  438596  439123  -  528  CheW protein  YP_001817255  normal  0.278695  decreased coverage  0.00626903  Opitutus terrae PB90-1  Bacteria 
 
 
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Oter_0366  CDS  NC_010571  439281  442091  -  2811  integral membrane sensor hybrid histidine kinase  YP_001817256  normal  0.977062  decreased coverage  0.000832087  Opitutus terrae PB90-1  Bacteria 
 
 
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Oter_0814  CDS  NC_010571  990429  991817  +  1389  glucose sorbosone dehydrogenase  YP_001817702  decreased coverage  0.00498666  normal  1  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_1004  CDS  NC_010571  1234459  1236270  -  1812  general substrate transporter  YP_001817892  normal  1  decreased coverage  0.00016386  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_1005  CDS  NC_010571  1236328  1238394  -  2067  Beta-N-acetylhexosaminidase  YP_001817893  normal  1  decreased coverage  0.000159373  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_1240  CDS  NC_010571  1534220  1534420  +  201  membrane protein  YP_001818125  decreased coverage  0.00603178  normal  0.880519  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_1241  CDS  NC_010571  1534518  1534838  +  321  protein of unknown function DUF883 ElaB  YP_001818126  decreased coverage  0.00670421  normal  0.898845  Opitutus terrae PB90-1  Bacteria 
 
 
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Oter_1669  CDS  NC_010571  2042385  2042981  +  597  GrpE protein  YP_001818553  normal  0.924604  decreased coverage  0.00844873  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_1838  CDS  NC_010571  2284409  2284756  -  348  hypothetical protein  YP_001818721  decreased coverage  0.00535805  normal  1  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_1968  CDS  NC_010571  2491224  2502143  +  10920  amino acid adenylation domain-containing protein  YP_001818851  normal  1  decreased coverage  0.00734125  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2225  CDS  NC_010571  2866008  2866904  -  897  ribonuclease BN  YP_001819108  normal  0.681291  decreased coverage  0.00304933  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2226  CDS  NC_010571  2867094  2867438  -  345  hypothetical protein  YP_001819109  normal  0.282433  decreased coverage  0.00277707  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2321  CDS  NC_010571  3002977  3004404  +  1428  TPR repeat-containing protein  YP_001819203  normal  0.084712  decreased coverage  0.00212856  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2322  CDS  NC_010571  3004500  3006335  -  1836  hypothetical protein  YP_001819204  normal  0.192429  decreased coverage  0.0026081  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2323  CDS  NC_010571  3006677  3008122  -  1446  hypothetical protein  YP_001819205  normal  0.696472  decreased coverage  0.0026081  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2327  CDS  NC_010571  3014185  3016596  -  2412  FG-GAP repeat-containing protein  YP_001819209  normal  0.50278  decreased coverage  0.00347389  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2328  CDS  NC_010571  3016694  3017461  -  768  LytTR family two component transcriptional regulator  YP_001819210  normal  0.261765  decreased coverage  0.00199939  Opitutus terrae PB90-1  Bacteria 
 
 
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Oter_2329  CDS  NC_010571  3017639  3018406  -  768  LytTR family two component transcriptional regulator  YP_001819211  normal  0.0531557  decreased coverage  0.00207881  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2356  CDS  NC_010571  3045690  3046733  +  1044  phenylalanyl-tRNA synthetase, alpha subunit  YP_001819238  decreased coverage  0.00615548  normal  0.115119  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2381  CDS  NC_010571  3071737  3072246  +  510  hypothetical protein  YP_001819263  decreased coverage  0.00279399  normal  0.781937  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2510  CDS  NC_010571  3231183  3232031  -  849  abortive infection protein  YP_001819392  decreased coverage  0.00961161  normal  1  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2739  CDS  NC_010571  3506203  3507525  +  1323  trigger factor  YP_001819620  normal  0.138547  decreased coverage  0.00279907  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2740  CDS  NC_010571  3507549  3508169  +  621  endopeptidase Clp  YP_001819621  normal  0.0600762  decreased coverage  0.00246808  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2741  CDS  NC_010571  3508248  3509543  +  1296  ATP-dependent Clp protease, ATP-binding subunit ClpX  YP_001819622  normal  0.555329  decreased coverage  0.00284359  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2742  CDS  NC_010571  3509632  3510936  +  1305  N-acylglucosamine 2-epimerase  YP_001819623  normal  1  decreased coverage  0.00284359  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2835  CDS  NC_010571  3618904  3621798  -  2895  multi-sensor hybrid histidine kinase  YP_001819716  normal  0.106901  decreased coverage  0.00127572  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2836  CDS  NC_010571  3622107  3623450  -  1344  signal recognition particle protein  YP_001819717  normal  0.533211  decreased coverage  0.000777787  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2837  CDS  NC_010571  3623590  3623958  -  369  response regulator receiver protein  YP_001819718  normal  1  decreased coverage  0.000598352  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2846  CDS  NC_010571  3632588  3633565  -  978  transketolase central region  YP_001819727  decreased coverage  0.00429271  normal  0.065717  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2849  CDS  NC_010571  3635631  3637313  +  1683  fimbrial assembly family protein  YP_001819730  decreased coverage  0.00996397  normal  0.0311908  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2930  CDS  NC_010571  3752744  3753214  +  471  Ferritin Dps family protein  YP_001819811  decreased coverage  0.00884055  normal  1  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_2987  CDS  NC_010571  3834962  3835474  -  513  hypothetical protein  YP_001819868  decreased coverage  0.00846336  normal  1  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_3144  CDS  NC_010571  4086432  4087013  +  582  DNA-3-methyladenine glycosylase  YP_001820024  decreased coverage  0.00878539  normal  0.470137  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_3189  CDS  NC_010571  4147113  4147715  -  603  Holliday junction DNA helicase RuvA  YP_001820069  decreased coverage  0.00764376  normal  1  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_3190  CDS  NC_010571  4147745  4148479  -  735  dihydrodipicolinate reductase  YP_001820070  decreased coverage  0.00851874  normal  1  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_3228  CDS  NC_010571  4216052  4217743  -  1692  glycoside hydrolase family protein  YP_001820108  decreased coverage  0.00674596  normal  0.0120766  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_3304  CDS  NC_010571  4326664  4328823  -  2160  methylmalonyl-CoA mutase, large subunit  YP_001820183  decreased coverage  0.00679496  normal  0.683271  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_3341    NC_010571  4367399  4367999  +  601      decreased coverage  0.00328468  normal  1  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_3741  CDS  NC_010571  4866508  4866825  -  318  CopG/DNA-binding domain-containing protein  YP_001820616  decreased coverage  0.00443628  normal  1  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_3897  CDS  NC_010571  5058136  5060715  -  2580  hypothetical protein  YP_001820771  decreased coverage  0.00760567  normal  0.272372  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_3959  CDS  NC_010571  5136760  5138004  +  1245  C-methyltransferase  YP_001820833  decreased coverage  0.00636655  normal  1  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_4029  CDS  NC_010571  5227793  5229121  +  1329  major facilitator transporter  YP_001820903  decreased coverage  0.00530062  normal  0.0326348  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_4091  CDS  NC_010571  5300765  5301928  +  1164  ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein  YP_001820965  decreased coverage  0.00248715  normal  0.783031  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_4149  CDS  NC_010571  5365870  5366760  +  891  binding-protein-dependent transport systems inner membrane component  YP_001821023  decreased coverage  0.00598191  normal  0.10352  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_4252  CDS  NC_010571  5502213  5503073  -  861  sulfotransferase  YP_001821125  decreased coverage  0.00749479  normal  0.651527  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_4293  CDS  NC_010571  5573177  5574595  +  1419  glucuronate isomerase  YP_001821166  decreased coverage  0.00297725  normal  1  Opitutus terrae PB90-1  Bacteria 
 
 
-
 
Oter_4497  CDS  NC_010571  5788068  5788838  +  771  two component LuxR family transcriptional regulator  YP_001821368  decreased coverage  0.00119302  normal  0.623088  Opitutus terrae PB90-1  Bacteria 
 
 
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