45 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Sked_00820  CDS  NC_013521  84037  85008  +  972  phosphate/sulfate permease  YP_003312889  decreased coverage  0.00395878  normal  0.1241  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
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Sked_04010  CDS  NC_013521  447856  450480  -  2625  hypothetical protein  YP_003313202  decreased coverage  0.00169592  normal  1  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_06520  CDS  NC_013521  744628  744738  +  111  hypothetical protein  YP_003313446  decreased coverage  0.00761363  normal  1  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_08100  CDS  NC_013521  921909  922727  -  819  hypothetical protein  YP_003313595  decreased coverage  0.00355717  normal  0.348179  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_09020  CDS  NC_013521  1031097  1031711  -  615  dTDP-4-dehydrorhamnose 3,5-epimerase  YP_003313686  decreased coverage  0.00951816  normal  0.326272  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_09040  CDS  NC_013521  1032858  1033736  -  879  Glucose-1-phosphate thymidylyltransferase  YP_003313688  decreased coverage  0.00724889  normal  0.162392  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_11200  CDS  NC_013521  1298202  1298393  -  192  LSU ribosomal protein L28P  YP_003313898  decreased coverage  0.00741345  normal  0.589072  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_11420  CDS  NC_013521  1323672  1325225  +  1554  GTP-binding protein Obg/CgtA  YP_003313920  normal  0.32525  decreased coverage  0.000779693  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_11620  CDS  NC_013521  1346219  1347139  +  921  ABC-type sugar transport system, permease component  YP_003313939  decreased coverage  0.00242068  normal  0.0915178  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_14820  CDS  NC_013521  1662604  1663935  +  1332  hypothetical protein  YP_003314252  normal  1  decreased coverage  0.00902064  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_14900  CDS  NC_013521  1674590  1675531  +  942  saccharopine dehydrogenase-like oxidoreductase  YP_003314260  decreased coverage  0.00802223  normal  0.0704992  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_16250  CDS  NC_013521  1820605  1823361  +  2757  aconitase  YP_003314394  decreased coverage  0.00478324  normal  1  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_16820  CDS  NC_013521  1878747  1879415  +  669  hypothetical protein  YP_003314444  normal  1  decreased coverage  0.00610406  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_17310  CDS  NC_013521  1933116  1933916  +  801  uncharacterized protein, putative amidase  YP_003314492  decreased coverage  0.00237656  normal  0.0796257  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_17320  CDS  NC_013521  1934016  1935254  -  1239  predicted acetamidase/formamidase  YP_003314493  decreased coverage  0.00772804  normal  0.101325  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_18020  CDS  NC_013521  2010860  2011180  +  321  hypothetical protein  YP_003314563  decreased coverage  0.00327498  normal  1  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_18500  CDS  NC_013521  2057741  2060659  -  2919  superfamily II RNA helicase  YP_003314610  decreased coverage  0.00038205  normal  0.0935996  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_18530  CDS  NC_013521  2062654  2062941  -  288  twin arginine-targeting protein translocase, TatA/E family  YP_003314613  normal  0.0332142  decreased coverage  0.00893017  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_18570  CDS  NC_013521  2065671  2066861  +  1191  hypothetical protein  YP_003314617  decreased coverage  0.000320987  normal  0.0615594  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_18790  CDS  NC_013521  2083927  2085549  -  1623  ABC-type dipeptide transport system, periplasmic component  YP_003314638  decreased coverage  0.00232176  normal  0.206883  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_19680  CDS  NC_013521  2191717  2192289  +  573  Clp amino terminal domain-containing protein  YP_003314727  decreased coverage  0.00680151  normal  1  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_20500  CDS  NC_013521  2284137  2285057  +  921  carbohydrate ABC transporter membrane protein  YP_003314806  decreased coverage  0.00619116  normal  0.339841  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_21300  CDS  NC_013521  2378374  2380434  -  2061  hypothetical protein  YP_003314884  decreased coverage  0.00049361  normal  0.0951382  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_22120  CDS  NC_013521  2462090  2463280  -  1191  uncharacterized membrane-anchored protein  YP_003314965  decreased coverage  0.00627059  normal  0.779983  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_22790  CDS  NC_013521  2532494  2533993  -  1500  UDP-N-acetylmuramate--L-alanine ligase  YP_003315028  normal  1  decreased coverage  0.00796449  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_22800  CDS  NC_013521  2533990  2535135  -  1146  UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase  YP_003315029  normal  1  decreased coverage  0.00765282  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_22810  CDS  NC_013521  2535128  2536432  -  1305  cell division protein FtsW  YP_003315030  normal  0.716468  decreased coverage  0.00888407  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_24720  CDS  NC_013521  2756714  2757349  -  636  single stranded DNA-binding protein  YP_003315218  decreased coverage  0.0081931  normal  0.0484863  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_27240  CDS  NC_013521  3032254  3032502  +  249  prevent-host-death family protein  YP_003315462  decreased coverage  0.00695261  normal  0.193392  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_27780  CDS  NC_013521  3098192  3098803  -  612  conserved hypothetical protein TIGR00427  YP_003315514  decreased coverage  0.004251  normal  0.739929  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_28550  CDS  NC_013521  3192087  3193436  -  1350  glycosyl transferase  YP_003315591  decreased coverage  0.00136572  normal  0.0940176  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_29460  CDS  NC_013521  3282470  3283474  -  1005  DNA-directed RNA polymerase subunit alpha  YP_003315682  decreased coverage  0.00737403  normal  1  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_29470  CDS  NC_013521  3283636  3284043  -  408  SSU ribosomal protein S11P  YP_003315683  decreased coverage  0.0093892  normal  1  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_31180  CDS  NC_013521  3467510  3467944  -  435  hypothetical protein  YP_003315849  decreased coverage  0.000117117  normal  0.0549663  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_31470  CDS  NC_013521  3501632  3502210  +  579  hypothetical protein  YP_003315878  decreased coverage  0.00321692  normal  0.396468  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_32630  CDS  NC_013521  3630748  3631887  -  1140  predicted dehydrogenase  YP_003315992  decreased coverage  0.00591325  normal  1  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_34550  CDS  NC_013521  3862664  3863311  +  648  transcriptional regulator, TetR family  YP_003316177  decreased coverage  0.00167706  normal  0.63182  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_34570  CDS  NC_013521  3864098  3864508  -  411  putative translation initiation inhibitor, yjgF family  YP_003316179  decreased coverage  0.00491284  normal  0.846357  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_34580  CDS  NC_013521  3864624  3865052  +  429  predicted transcriptional regulator  YP_003316180  decreased coverage  0.00510828  normal  0.627972  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_36060  CDS  NC_013521  4034686  4035729  +  1044  uroporphyrinogen-III synthase  YP_003316326  decreased coverage  0.000389625  normal  1  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_36560  CDS  NC_013521  4084366  4085385  -  1020  hypothetical protein  YP_003316376  decreased coverage  0.000556158  normal  1  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_36810  CDS  NC_013521  4115221  4116087  +  867  ABC-type metal ion transport system, periplasmic component/surface adhesin  YP_003316401  decreased coverage  0.00286711  normal  0.394696  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_36820  CDS  NC_013521  4116320  4116973  -  654  uncharacterized protein, copper resistance protein CopC-like protein  YP_003316402  decreased coverage  0.00403371  normal  0.543816  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_36830  CDS  NC_013521  4117153  4119090  -  1938  cell division protein FtsI/penicillin-binding protein 2  YP_003316403  decreased coverage  0.00463694  normal  0.702417  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
-
 
Sked_37380  CDS  NC_013521  4179207  4179719  +  513  transcriptional regulator  YP_003316455  decreased coverage  0.00623075  normal  1  Sanguibacter keddieii DSM 10542  Bacteria 
 
 
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