58 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Mpop_0580  CDS  NC_010725  625777  626997  1221  glycine oxidase ThiO  YP_001923293  normal  0.0590429  decreased coverage  0.00474558  Methylobacterium populi BJ001  Bacteria 
 
 
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Mpop_0581  CDS  NC_010725  627437  629125  1689  methyl-accepting chemotaxis sensory transducer  YP_001923294  normal  0.0281709  decreased coverage  0.00474558  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_0610  CDS  NC_010725  655609  657021  1413  OmpA/MotB domain protein  YP_001923323  decreased coverage  0.0096444  normal  0.330714  Methylobacterium populi BJ001  Bacteria 
 
 
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Mpop_0817  CDS  NC_010725  873767  874915  1149  protein of unknown function DUF140  YP_001923530  decreased coverage  0.000758551  normal  0.202009  Methylobacterium populi BJ001  Bacteria 
 
 
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Mpop_0964  CDS  NC_010725  1028204  1029049  846  Methyltransferase type 11  YP_001923676  decreased coverage  0.0015183  normal  Methylobacterium populi BJ001  Bacteria 
 
 
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Mpop_1004  CDS  NC_010725  1066570  1068243  1674  beta-lactamase domain protein  YP_001923715  decreased coverage  0.00402664  normal  0.192677  Methylobacterium populi BJ001  Bacteria 
 
 
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Mpop_1070  CDS  NC_010725  1143680  1144612  933  transcriptional regulator, LysR family  YP_001923780  normal  0.651506  decreased coverage  0.00634214  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_1071  CDS  NC_010725  1144770  1146020  1251  protein of unknown function DUF989  YP_001923781  normal  0.276689  decreased coverage  0.0064959  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_1084  CDS  NC_010725  1155563  1156567  1005  NMT1/THI5 like domain protein  YP_001923794  decreased coverage  0.00229881  normal  0.0195344  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_1093  CDS  NC_010725  1166465  1167451  987  NMT1/THI5 like domain protein  YP_001923803  decreased coverage  0.000718314  normal  0.110975  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_1098  CDS  NC_010725  1171268  1172239  972  2OG-Fe(II) oxygenase  YP_001923808  decreased coverage  0.00260099  normal  0.465631  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_1202  CDS  NC_010725  1285649  1287259  1611  drug resistance transporter, EmrB/QacA subfamily  YP_001923909  decreased coverage  0.00417242  normal  0.367186  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_1253  CDS  NC_010725  1342117  1343628  1512  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit  YP_001923959  normal  decreased coverage  0.00657617  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_1256  CDS  NC_010725  1346440  1347348  909  transcriptional regulator, LysR family  YP_001923962  normal  0.360363  decreased coverage  0.00967719  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_1258  CDS  NC_010725  1349360  1351075  1716  glucose-methanol-choline oxidoreductase  YP_001923964  normal  0.564674  decreased coverage  0.00861873  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_1261  CDS  NC_010725  1353328  1354092  765  Methyltransferase type 12  YP_001923967  normal  decreased coverage  0.00506996  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_1262  CDS  NC_010725  1354089  1354703  615  Phosphoglycerate mutase  YP_001923968  normal  decreased coverage  0.00931821  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_1303  CDS  NC_010725  1403481  1405109  1629  ABC transporter related  YP_001924009  decreased coverage  0.00211833  normal  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_1341  CDS  NC_010725  1458828  1459010  183  hypothetical protein  YP_001924046  decreased coverage  0.00692585  hitchhiker  0.00146705  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_1348  CDS  NC_010725  1464518  1465618  1101  acyltransferase 3  YP_001924053  normal  0.558727  decreased coverage  0.000177044  Methylobacterium populi BJ001  Bacteria 
 
 
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Mpop_1374  CDS  NC_010725  1490595  1491140  546  protein of unknown function DUF461  YP_001924076  decreased coverage  0.0071254  normal  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_1397  CDS  NC_010725  1517510  1518235  726  hypothetical protein  YP_001924099  decreased coverage  0.00418163  normal  0.145316  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_1540  CDS  NC_010725  1655609  1657441  1833  gamma-glutamyltransferase  YP_001924241  normal  decreased coverage  0.00533292  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_1614  CDS  NC_010725  1743772  1744569  798  alpha/beta hydrolase fold  YP_001924313  normal  0.0433205  decreased coverage  0.000315383  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_2479  CDS  NC_010725  2697816  2698304  489  hypothetical protein  YP_001925175  normal  decreased coverage  0.00521562  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_2480  CDS  NC_010725  2698301  2698963  663  imidazole glycerol phosphate synthase subunit HisH  YP_001925176  normal  decreased coverage  0.00537533  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_2553  CDS  NC_010725  2778526  2779344  819  hypothetical protein  YP_001925245  decreased coverage  0.00280078  hitchhiker  0.00968431  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_2554  CDS  NC_010725  2779479  2781839  2361  heavy metal translocating P-type ATPase  YP_001925246  normal  decreased coverage  0.00876306  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_2555  CDS  NC_010725  2781946  2782728  783  Lytic transglycosylase catalytic  YP_001925247  normal  decreased coverage  0.00526771  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_2558  CDS  NC_010725  2784079  2784930  852  hypothetical protein  YP_001925250  normal  decreased coverage  0.00491481  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_2561  CDS  NC_010725  2787221  2788780  1560  DnaJ central domain protein  YP_001925253  normal  decreased coverage  0.00796281  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_2774  CDS  NC_010725  2976054  2977088  1035  molybdenum cofactor biosynthesis protein A  YP_001925464  decreased coverage  0.00282433  normal  0.228566  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_2876  CDS  NC_010725  3094412  3095902  1491  two component, sigma54 specific, transcriptional regulator, Fis family  YP_001925566  decreased coverage  0.0022159  normal  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_2880  CDS  NC_010725  3099106  3100476  1371  ABC-1 domain protein  YP_001925570  decreased coverage  0.00208044  normal  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_2913  CDS  NC_010725  3139038  3140477  1440  dihydrolipoamide dehydrogenase  YP_001925603  decreased coverage  0.00695223  normal  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_2920  CDS  NC_010725  3144332  3145678  1347  L-sorbosone dehydrogenase  YP_001925610  decreased coverage  0.00641513  normal  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_3600  CDS  NC_010725  3841050  3841841  792  ABC transporter related  YP_001926284  decreased coverage  0.00199632  normal  0.177255  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_3606  CDS  NC_010725  3847381  3848067  687  conserved hypothetical proteinn  YP_001926290  decreased coverage  0.00367306  normal  0.482079  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_3611  CDS  NC_010725  3856449  3857003  555  transcriptional regulator, TetR family  YP_001926295  decreased coverage  0.00310361  normal  0.0495451  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_3618  CDS  NC_010725  3864423  3864704  282  hypothetical protein  YP_001926302  normal  decreased coverage  0.00973052  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_3757  CDS  NC_010725  4005478  4006821  1344  transposase IS4 family protein  YP_001926431  decreased coverage  0.00995603  normal  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_3920  CDS  NC_010725  4172549  4173274  726  uncharacterized protein-like protein  YP_001926582  decreased coverage  0.00106031  normal  0.125751  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_3921  CDS  NC_010725  4173410  4173964  555  beta-Ig-H3/fasciclin  YP_001926583  decreased coverage  0.00329996  normal  0.130645  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_4286  CDS  NC_010725  4572706  4573578  873  hypothetical protein  YP_001926927  decreased coverage  0.00159614  normal  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_4396  CDS  NC_010725  4691133  4692299  1167  metal dependent phosphohydrolase  YP_001927032  decreased coverage  0.00343832  normal  0.803975  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_4666  CDS  NC_010725  4981206  4982540  1335  Rubredoxin-type Fe(Cys)4 protein  YP_001927297  decreased coverage  0.00796628  normal  0.983667  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_4711  CDS  NC_010725  5028862  5029554  693  cyclic nucleotide-binding protein  YP_001927342  normal  0.754309  decreased coverage  0.00295307  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_4712  CDS  NC_010725  5030366  5033098  2733  hypothetical protein  YP_001927343  normal  decreased coverage  0.00644592  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_4719  CDS  NC_010725  5038509  5039285  777  hydroxypyruvate isomerase  YP_001927350  normal  decreased coverage  0.00317481  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_4720  CDS  NC_010725  5039403  5040275  873  short-chain dehydrogenase/reductase SDR  YP_001927351  normal  decreased coverage  0.00355451  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_4721  CDS  NC_010725  5040353  5043325  2973  D-lactate dehydrogenase (cytochrome)  YP_001927352  normal  decreased coverage  0.00766177  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_4732  CDS  NC_010725  5055911  5056312  402  response regulator receiver protein  YP_001927363  normal  0.788518  decreased coverage  0.0029072  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_4733  CDS  NC_010725  5056540  5057898  1359  pentapeptide repeat protein  YP_001927364  normal  0.832203  decreased coverage  0.00416272  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_4735  CDS  NC_010725  5060507  5061922  1416  transcriptional regulator, GntR family with aminotransferase domain  YP_001927366  normal  decreased coverage  0.00481919  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_4806  CDS  NC_010725  5135889  5136023  135  hypothetical protein  YP_001927437  decreased coverage  0.00609989  normal  0.162313  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_4807  CDS  NC_010725  5136102  5136698  597  Phosphoglycerate mutase  YP_001927438  decreased coverage  0.000268692  normal  0.187033  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_4997  CDS  NC_010725  5350197  5350670  474  protein tyrosine phosphatase  YP_001927628  decreased coverage  0.00738059  normal  0.333757  Methylobacterium populi BJ001  Bacteria 
 
 
-
 
Mpop_5191  CDS  NC_010725  5558901  5559578  678  transcriptional regulator, GntR family  YP_001927820  decreased coverage  0.000155009  normal  Methylobacterium populi BJ001  Bacteria 
 
 
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