57 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
SYO3AOP1_0082  CDS  NC_010730  91727  92743  -  1017  hypothetical protein  YP_001930284  decreased coverage  0.000000000103691  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0083  CDS  NC_010730  92760  93038  -  279  cytochrome c oxidoreductase subunit B  YP_001930285  decreased coverage  0.00000000000280154  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0114  CDS  NC_010730  127602  128234  -  633  Phosphoglycerate mutase  YP_001930314  decreased coverage  0.00000000110333  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0132  CDS  NC_010730  145187  146425  -  1239  transposase mutator type  YP_001930332  decreased coverage  0.000168301  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0144    NC_010730  158786  159772  +  987      decreased coverage  0.000023312  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0161  CDS  NC_010730  177848  178612  -  765  cytochrome c class I  YP_001930360  decreased coverage  0.00000000000207523  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0280  CDS  NC_010730  290086  290445  -  360  50S ribosomal protein L24  YP_001930479  decreased coverage  0.000000000492144  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0281  CDS  NC_010730  290448  290816  -  369  50S ribosomal protein L14  YP_001930480  decreased coverage  0.000000000523315  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0306  CDS  NC_010730  313497  314687  -  1191  elongation factor Tu  YP_001930505  decreased coverage  0.0000000000239655  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0467  CDS  NC_010730  481057  482289  -  1233  hypothetical protein  YP_001930662  decreased coverage  0.0000000000668675  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0471  CDS  NC_010730  483446  483817  +  372  hypothetical protein  YP_001930666  decreased coverage  0.000000000000640254  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0531  CDS  NC_010730  542343  543623  +  1281  hypothetical protein  YP_001930725  decreased coverage  0.00100701  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0540  CDS  NC_010730  557230  558144  -  915  ornithine carbamoyltransferase  YP_001930734  decreased coverage  0.000000671603  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0637  CDS  NC_010730  656812  657156  +  345  hypothetical protein  YP_001930827  decreased coverage  0.0000000000000266043  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0675  CDS  NC_010730  694585  695877  +  1293  MiaB-like tRNA modifying enzyme YliG  YP_001930865  decreased coverage  0.00122823  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0694  CDS  NC_010730  712505  714745  -  2241  isocitrate dehydrogenase, NADP-dependent  YP_001930884  decreased coverage  0.00369778  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0717  CDS  NC_010730  740457  741824  +  1368  conserved hypothetical protein, putative cytochrome  YP_001930907  decreased coverage  0.0000000000111138  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0727    NC_010730  754864  755578  -  715      decreased coverage  0.000611807  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0746  CDS  NC_010730  775279  776292  +  1014  histidine kinase  YP_001930933  decreased coverage  0.000000000000736417  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0789  CDS  NC_010730  827214  828122  +  909  transposase IS4 family protein  YP_001930976  decreased coverage  0.00000017402  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0827  CDS  NC_010730  866345  866887  +  543  deoxycytidine triphosphate deaminase  YP_001931014  decreased coverage  0.000000000000119841  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0844  CDS  NC_010730  881965  882390  +  426  S-adenosylmethionine decarboxylase proenzyme  YP_001931031  decreased coverage  0.00000000000046314  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0914  CDS  NC_010730  950106  950909  +  804  fructose-bisphosphate aldolase  YP_001931095  decreased coverage  0.000000000266803  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0957  CDS  NC_010730  990506  990991  -  486  TPR repeat-containing protein  YP_001931134  decreased coverage  0.00000000000843973  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0958  CDS  NC_010730  990946  991440  -  495  peptidase C39 bacteriocin processing  YP_001931135  decreased coverage  0.00000000000835793  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0977  CDS  NC_010730  1009611  1010954  +  1344  tRNA modification GTPase TrmE  YP_001931152  decreased coverage  0.00000000000239803  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1056  CDS  NC_010730  1097720  1099027  -  1308  ATP citrate synthase, subunit 1  YP_001931229  decreased coverage  0.00742266  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1136  CDS  NC_010730  1186196  1186906  -  711  protein of unknown function DUF164  YP_001931304  decreased coverage  0.000000000346068  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1160  CDS  NC_010730  1207285  1208781  +  1497  protease Do  YP_001931326  decreased coverage  0.000000000336016  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1204  CDS  NC_010730  1254462  1255040  -  579  hypothetical protein  YP_001931369  decreased coverage  0.0000000000000581481  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1223  CDS  NC_010730  1273607  1274470  -  864  NAD-dependent epimerase/dehydratase  YP_001931388  decreased coverage  0.00000000000016396  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1283  CDS  NC_010730  1326067  1327122  +  1056  Glutamine--scyllo-inositol transaminase  YP_001931448  decreased coverage  0.0000000837015  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1284  CDS  NC_010730  1327125  1327511  +  387  hypothetical protein  YP_001931449  decreased coverage  0.0000000190603  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1353  CDS  NC_010730  1388731  1389465  +  735  protein of unknown function DUF399  YP_001931515  decreased coverage  0.0000000000200413  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1372  CDS  NC_010730  1407646  1409751  -  2106  TonB-dependent receptor plug  YP_001931533  decreased coverage  0.00000623394  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1395  CDS  NC_010730  1436996  1438408  +  1413  exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase  YP_001931556  decreased coverage  0.000000000275666  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1396  CDS  NC_010730  1438426  1439646  -  1221  glycosyl transferase group 1  YP_001931557  decreased coverage  0.0000000038163  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1397  CDS  NC_010730  1439656  1440762  -  1107  glycosyl transferase group 1  YP_001931558  decreased coverage  0.00000000195676  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1398  CDS  NC_010730  1440904  1441884  -  981  protein containing nucleotide-diphospho-sugar transferase domain  YP_001931559  decreased coverage  0.00000000735856  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1405  CDS  NC_010730  1446340  1447596  -  1257  polysaccharide biosynthesis protein  YP_001931564  decreased coverage  0.0000000283826  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1442  CDS  NC_010730  1486223  1487329  -  1107  oxygen-independent coproporphyrinogen III oxidase  YP_001931598  decreased coverage  0.0000000616139  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1462  CDS  NC_010730  1506169  1509990  -  3822  hypothetical protein  YP_001931618  decreased coverage  0.0000197368  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1473  CDS  NC_010730  1519458  1522028  +  2571  surface antigen (D15)  YP_001931629  decreased coverage  0.00000000179625  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1477  CDS  NC_010730  1524413  1525648  +  1236  diguanylate cyclase  YP_001931633  decreased coverage  0.000000000124607  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1478  CDS  NC_010730  1525913  1526725  -  813  histidine kinase  YP_001931634  decreased coverage  0.00000000000106668  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1535  CDS  NC_010730  1576227  1577036  -  810  thioredoxin  YP_001931690  decreased coverage  0.00000141662  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1564  CDS  NC_010730  1613168  1614397  -  1230  hypothetical protein  YP_001931716  decreased coverage  0.000000346035  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1591  CDS  NC_010730  1645406  1646101  +  696  DNA modification methylase  YP_001931743  decreased coverage  0.00000000000511148  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1592  CDS  NC_010730  1646126  1646266  -  141  hypothetical protein  YP_001931744  decreased coverage  0.000000000000262138  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1593  CDS  NC_010730  1646259  1647041  -  783  hypothetical protein  YP_001931745  decreased coverage  0.00000000000791677  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1646  CDS  NC_010730  1701546  1703483  -  1938  Tetratricopeptide domain protein  YP_001931798  decreased coverage  0.00000000898881  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1647  CDS  NC_010730  1703480  1704865  -  1386  hypothetical protein  YP_001931799  decreased coverage  0.000000185141  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1648  CDS  NC_010730  1704869  1705510  -  642  RNA polymerase, sigma 28 subunit, FliA/WhiG family  YP_001931800  decreased coverage  0.0000000334042  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_R0010  tRNA  NC_010730  314963  315045  -  83  tRNA-Tyr    decreased coverage  0.0000000000000653583  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_R0011  tRNA  NC_010730  315069  315141  -  73  tRNA-Thr    decreased coverage  0.0000000000000646692  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_R0018  tRNA  NC_010730  400572  400655  +  84  tRNA-Leu    decreased coverage  0.0000000000000485581  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_R0041  tRNA  NC_010730  1186934  1187007  -  74  tRNA-Met    decreased coverage  0.0000000000154494  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>