35 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
CBUD_0002  CDS  NC_009727  1639  2748  +  1110  DNA polymerase III, beta chain  YP_001423441  decreased coverage  0.000280325  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_0104  CDS  NC_009727  98541  99356  -  816  Dna-J like membrane chaperone protein  YP_001423536  decreased coverage  0.000467525  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_0105  CDS  NC_009727  99392  100699  +  1308  glutamate--cysteine ligase  YP_001423537  decreased coverage  0.005063  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_0146  CDS  NC_009727  132203  132409  -  207  carbon storage regulator  YP_001423577  decreased coverage  0.000000207191  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_0251a  CDS  NC_009727  238635  238757  -  123  hypothetical protein  YP_002268242  decreased coverage  0.000000174444  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_0286  CDS  NC_009727  272702  273085  +  384  co-chaperonin GroES  YP_001423709  decreased coverage  0.00000313463  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_0287  CDS  NC_009727  273113  274771  +  1659  chaperonin GroEL  YP_001423710  decreased coverage  0.0000393634  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_0514  CDS  NC_009727  492698  493576  -  879  rod shape-determining protein MreC  YP_001423928  decreased coverage  0.00000273535  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_0609  CDS  NC_009727  590413  591303  +  891  elongation factor Ts  YP_001424016  decreased coverage  0.00638051  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_0679  CDS  NC_009727  658873  659046  +  174  hypothetical protein  YP_001424083  decreased coverage  0.00557428  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_0749  CDS  NC_009727  727107  727760  -  654  hypothetical protein  YP_001424144  decreased coverage  0.00566229  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_0827  CDS  NC_009727  804402  804800  -  399  hypothetical protein  YP_001424214  decreased coverage  0.00170258  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_1139  CDS  NC_009727  1112766  1113155  +  390  RNA binding protein  YP_001424503  decreased coverage  0.00000522116  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_1232  CDS  NC_009727  1208352  1208918  -  567  hypothetical membrane associated protein  YP_001424592  decreased coverage  0.00932026  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_1241  CDS  NC_009727  1218703  1219053  -  351  protein translocase subunit  YP_001424601  decreased coverage  0.0000875528  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_1241a  CDS  NC_009727  1219080  1219433  -  354  hypothetical membrane associated protein  YP_002268314  decreased coverage  0.0000221571  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_1314  CDS  NC_009727  1310098  1312716  +  2619  ATP-dependent nuclease subunit B  YP_001424667  decreased coverage  0.00191673  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_1381  CDS  NC_009727  1380820  1381446  -  627  heat shock protein GrpE  YP_001424733  decreased coverage  0.00117514  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_1389  CDS  NC_009727  1387257  1387694  -  438  ferric uptake regulation protein  YP_001424741  decreased coverage  0.000000498211  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_1462  CDS  NC_009727  1456490  1458634  -  2145  GTP pyrophosphokinase  YP_001424809  decreased coverage  0.00122903  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_1510  CDS  NC_009727  1506477  1506680  +  204  hypothetical protein  YP_001424854  decreased coverage  0.000000223713  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_1540  CDS  NC_009727  1542153  1542323  -  171  hypothetical protein  YP_001424884  decreased coverage  0.00578154  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_1580  CDS  NC_009727  1585148  1585402  -  255  acyl carrier protein  YP_001424918  decreased coverage  0.00000805484  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_1590  CDS  NC_009727  1594627  1596789  +  2163  ribonuclease E  YP_001424928  decreased coverage  0.000584784  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_1619  CDS  NC_009727  1621524  1621889  -  366  thioredoxin  YP_001424957  decreased coverage  0.000000289203  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_1641  CDS  NC_009727  1635748  1637034  -  1287  transporter, MFS superfamily  YP_001424979  decreased coverage  0.00499002  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_1717  CDS  NC_009727  1712753  1713511  +  759  phosphate regulon sensor protein  YP_001425050  decreased coverage  0.0057387  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_1870  CDS  NC_009727  1849276  1850469  -  1194  elongation factor Tu  YP_001425197  decreased coverage  0.00000816391  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_1885  CDS  NC_009727  1862219  1863235  -  1017  hypothetical protein  YP_001425209  decreased coverage  0.00241335  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_2068  CDS  NC_009727  2044911  2045360  -  450  DnaK suppressor protein  YP_001425374  decreased coverage  0.0000191774  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_2100  CDS  NC_009727  2066078  2068375  +  2298  DNA topoisomerase I  YP_001425405  decreased coverage  0.000378679  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_2185  CDS  NC_009727  2150869  2151207  -  339  thioredoxin  YP_001425487  decreased coverage  0.0000121318  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_A0011  CDS  NC_009726  4872  5276  +  405  hypothetical protein  YP_001423383  decreased coverage  0.000804459  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_A0056  CDS  NC_009726  41241  41585  -  345  putative DNA-binding protein  YP_001423425  decreased coverage  0.000362045  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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CBUD_A0057  CDS  NC_009726  41582  41947  -  366  hypothetical protein  YP_001423426  decreased coverage  0.000330788  n/a    Coxiella burnetii Dugway 5J108-111  Bacteria 
 
 
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