19 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Rpic12D_3472  CDS  NC_012857  15754  16893  -  1140  efflux transporter, RND family, MFP subunit  YP_002983407  decreased coverage  0.000321827  normal  0.111591  Ralstonia pickettii 12D  Bacteria 
 
 
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Rpic12D_3721  CDS  NC_012857  275636  275926  -  291  histone family protein nucleoid-structuring protein H-NS  YP_002983652  decreased coverage  0.00112888  normal  0.513312  Ralstonia pickettii 12D  Bacteria 
 
 
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Rpic12D_3964  CDS  NC_012857  541766  542638  +  873  transcriptional regulator, LysR family  YP_002983892  decreased coverage  0.00150668  normal  0.033592  Ralstonia pickettii 12D  Bacteria 
 
 
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Rpic12D_4322  CDS  NC_012857  938243  938815  +  573  lipoprotein signal peptide  YP_002984237  normal  1  decreased coverage  0.00684015  Ralstonia pickettii 12D  Bacteria 
 
 
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Rpic12D_4447  CDS  NC_012857  1087588  1087863  -  276  plasmid stabilization system  YP_002984361  decreased coverage  0.00132305  normal  0.136677  Ralstonia pickettii 12D  Bacteria 
 
 
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Rpic12D_4448  CDS  NC_012857  1087863  1088126  -  264  transcriptional regulator, CopG family  YP_002984362  decreased coverage  0.00107538  normal  0.141055  Ralstonia pickettii 12D  Bacteria 
 
 
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Rpic12D_4478  CDS  NC_012857  1113099  1116128  -  3030  transposase Tn3 family protein  YP_002984392  normal  1  decreased coverage  0.000000000650614  Ralstonia pickettii 12D  Bacteria 
 
 
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Rpic12D_4479  CDS  NC_012857  1116125  1116718  -  594  Resolvase domain protein  YP_002984393  normal  1  decreased coverage  0.000000000147912  Ralstonia pickettii 12D  Bacteria 
 
 
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Rpic12D_4480  CDS  NC_012857  1116957  1117235  +  279  hypothetical protein  YP_002984394  normal  1  decreased coverage  0.000000000118504  Ralstonia pickettii 12D  Bacteria 
 
 
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Rpic12D_4510  CDS  NC_012857  1147758  1149314  -  1557  thymidine phosphorylase  YP_002984424  decreased coverage  0.00125183  normal  0.427324  Ralstonia pickettii 12D  Bacteria 
 
 
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Rpic12D_4536  CDS  NC_012857  1173800  1175617  -  1818  ribonucleotide reductase-like protein  YP_002984449  decreased coverage  0.0042263  normal  0.026709  Ralstonia pickettii 12D  Bacteria 
 
 
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Rpic12D_4541  CDS  NC_012857  1180572  1181363  -  792  polysaccharide deacetylase  YP_002984454  normal  1  decreased coverage  0.00515582  Ralstonia pickettii 12D  Bacteria 
 
 
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Rpic12D_4542  CDS  NC_012857  1181416  1182009  -  594  Rhomboid family protein  YP_002984455  normal  1  decreased coverage  0.00483276  Ralstonia pickettii 12D  Bacteria 
 
 
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Rpic12D_4543  CDS  NC_012857  1182190  1183938  +  1749  PHP domain protein  YP_002984456  normal  1  decreased coverage  0.00710379  Ralstonia pickettii 12D  Bacteria 
 
 
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Rpic12D_4544  CDS  NC_012857  1184100  1184417  +  318  ribosomal subunit interface protein  YP_002984457  normal  1  decreased coverage  0.00451099  Ralstonia pickettii 12D  Bacteria 
 
 
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Rpic12D_4545  CDS  NC_012857  1184441  1185187  -  747  acetoacetyl-CoA reductase  YP_002984458  normal  1  decreased coverage  0.00570408  Ralstonia pickettii 12D  Bacteria 
 
 
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Rpic12D_4546  CDS  NC_012857  1185195  1185698  -  504  hypothetical protein  YP_002984459  normal  1  decreased coverage  0.0051838  Ralstonia pickettii 12D  Bacteria 
 
 
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Rpic12D_4547  CDS  NC_012857  1185707  1186360  -  654  nitroreductase  YP_002984460  normal  1  decreased coverage  0.00573594  Ralstonia pickettii 12D  Bacteria 
 
 
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Rpic12D_4548  CDS  NC_012857  1186408  1187475  -  1068  Alcohol dehydrogenase GroES domain protein  YP_002984461  normal  1  decreased coverage  0.00643704  Ralstonia pickettii 12D  Bacteria 
 
 
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