33 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
MmarC7_0004  CDS  NC_009637  5395  7932  -  2538  hypothetical protein  YP_001329228  decreased coverage  0.00169415  unclonable  0.0000000310884  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0015  CDS  NC_009637  22468  22908  +  441  hypothetical protein  YP_001329238  decreased coverage  0.00905926  hitchhiker  0.000816539  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0041  CDS  NC_009637  46537  47091  -  555  resolvase domain-containing protein  YP_001329263  normal  1  decreased coverage  0.0000573211  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0042  CDS  NC_009637  47255  48205  -  951  hypothetical protein  YP_001329264  normal  1  decreased coverage  0.000066001  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0082  CDS  NC_009637  102506  103111  -  606  ribonuclease H  YP_001329303  hitchhiker  0.000796029  decreased coverage  0.0000638977  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0083  CDS  NC_009637  103463  104131  +  669  hypothetical protein  YP_001329304  decreased coverage  0.000843512  decreased coverage  0.0000753316  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0085  CDS  NC_009637  104681  105268  -  588  TetR family transcriptional regulator  YP_001329306  hitchhiker  0.0016021  decreased coverage  0.0000722764  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0092  CDS  NC_009637  109402  109875  -  474  peptide methionine sulfoxide reductase  YP_001329313  normal  0.570537  decreased coverage  0.0000698173  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0093  CDS  NC_009637  110123  110746  +  624  lysine exporter protein LysE/YggA  YP_001329314  normal  0.60262  decreased coverage  0.0000734751  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0174  CDS  NC_009637  185211  187970  +  2760  CheA signal transduction histidine kinase  YP_001329395  decreased coverage  0.00798527  normal  0.714787  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0277  CDS  NC_009637  293719  294120  -  402  hypothetical protein  YP_001329498  normal  0.022466  decreased coverage  0.00000180367  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0333  CDS  NC_009637  347058  347891  +  834  glycosyl transferase family protein  YP_001329554  normal  0.0642645  decreased coverage  0.00000584386  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0334  CDS  NC_009637  347878  348675  +  798  hypothetical protein  YP_001329555  normal  0.0356311  decreased coverage  0.000000899719  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0341  CDS  NC_009637  354262  355764  -  1503  polysaccharide biosynthesis protein  YP_001329561  normal  0.467363  decreased coverage  0.0000100108  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0636  CDS  NC_009637  638204  639250  -  1047  aspartate-semialdehyde dehydrogenase  YP_001329854  decreased coverage  0.0076377  normal  0.238607  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0650  CDS  NC_009637  653503  653718  +  216  50S ribosomal protein L29P  YP_001329868  hitchhiker  0.0000000328049  decreased coverage  0.0000608142  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0651  CDS  NC_009637  653802  654110  +  309  translation initiation factor Sui1  YP_001329869  decreased coverage  0.000000000433453  decreased coverage  0.0000613351  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0652  CDS  NC_009637  654178  654474  +  297  ribonuclease P protein component 1  YP_001329870  hitchhiker  0.000000274368  decreased coverage  0.0000593448  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0653  CDS  NC_009637  654639  654968  +  330  30S ribosomal protein S17P  YP_001329871  hitchhiker  0.00000821144  decreased coverage  0.0000578449  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0654  CDS  NC_009637  654989  655387  +  399  50S ribosomal protein L14P  YP_001329872  hitchhiker  0.0000102668  decreased coverage  0.0000588406  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0655  CDS  NC_009637  655407  655766  +  360  50S ribosomal protein L24P  YP_001329873  hitchhiker  0.000112654  decreased coverage  0.0000623548  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0656  CDS  NC_009637  655778  656512  +  735  30S ribosomal protein S4e  YP_001329874  hitchhiker  0.0055669  decreased coverage  0.0000746935  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0657  CDS  NC_009637  656541  657086  +  546  50S ribosomal protein L5P  YP_001329875  normal  0.15981  decreased coverage  0.0000704942  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0658  CDS  NC_009637  657096  657257  +  162  30S ribosomal protein S14P  YP_001329876  normal  0.133045  decreased coverage  0.0000578449  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0754  CDS  NC_009637  736135  736893  +  759  extracellular solute-binding protein  YP_001329972  decreased coverage  0.00633321  normal  1  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0882  CDS  NC_009637  849035  849430  -  396  hypothetical protein  YP_001330100  normal  0.416854  decreased coverage  0.000222809  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_1029  CDS  NC_009637  1005172  1005690  -  519  transcription regulator ArsR  YP_001330247  normal  0.140635  decreased coverage  0.00225669  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_1468    NC_009637  1429683  1429979  -  297      decreased coverage  0.000000000589837  normal  0.0538497  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_1514  CDS  NC_009637  1468686  1469096  +  411  hypothetical protein  YP_001330724  normal  0.303873  decreased coverage  0.0000014256  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_1515  CDS  NC_009637  1469454  1471100  -  1647  hypothetical protein  YP_001330725  normal  1  decreased coverage  0.00000386957  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_1663  CDS  NC_009637  1611067  1611255  -  189  50S ribosomal protein L24e  YP_001330872  decreased coverage  0.0076779  normal  1  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_1793  CDS  NC_009637  1756224  1757060  +  837  hypothetical protein  YP_001330998  decreased coverage  0.00382966  unclonable  0.00000000701935  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_R0046  tRNA  NC_009637  1469295  1469379  -  85  tRNA-Ser    normal  0.481236  decreased coverage  0.00000143927  Methanococcus maripaludis C7  Archaea 
 
 
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