109 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Gbem_0001  CDS  NC_011146  166  1542  +  1377  chromosomal replication initiation protein  YP_002136830  decreased coverage  0.00000304436  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0089  CDS  NC_011146  110803  111777  -  975  Rhodanese domain protein  YP_002136916  decreased coverage  0.00000095367  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0101  CDS  NC_011146  124808  125287  -  480  hypothetical protein  YP_002136928  decreased coverage  0.000000666192  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0152  CDS  NC_011146  183738  184052  +  315  hypothetical protein  YP_002136979  decreased coverage  0.000000026617  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0153  CDS  NC_011146  184092  184910  +  819  4Fe-4S ferredoxin iron-sulfur binding domain protein  YP_002136980  decreased coverage  0.000000371436  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0154  CDS  NC_011146  185027  185629  +  603  alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen  YP_002136981  decreased coverage  0.0000000916474  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0239  CDS  NC_011146  283542  283874  +  333  hypothetical protein  YP_002137066  decreased coverage  0.0000000332079  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0240  CDS  NC_011146  283882  284622  -  741  16S ribosomal RNA methyltransferase RsmE  YP_002137067  decreased coverage  0.000000270837  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0278  CDS  NC_011146  336572  337024  +  453  hypothetical protein  YP_002137105  decreased coverage  0.00000309755  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0293  CDS  NC_011146  358457  359071  -  615  OmpA/MotB domain protein  YP_002137120  decreased coverage  0.000135813  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0309  CDS  NC_011146  382719  383318  +  600  hypothetical protein  YP_002137136  decreased coverage  0.0000000916474  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0384  CDS  NC_011146  462344  463270  +  927  ThiJ/PfpI domain protein  YP_002137209  decreased coverage  0.00197683  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0404  CDS  NC_011146  480328  480657  -  330  thioredoxin  YP_002137229  decreased coverage  0.00000190247  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0415  CDS  NC_011146  490423  490986  +  564  elongation factor P  YP_002137240  decreased coverage  0.00396498  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0571  CDS  NC_011146  694102  694665  +  564  hypothetical protein  YP_002137395  decreased coverage  0.00000112833  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0572  CDS  NC_011146  694786  695856  -  1071  branched-chain amino acid aminotransferase  YP_002137396  decreased coverage  0.0000149445  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0573  CDS  NC_011146  696093  696950  +  858  putative RNA polymerase, sigma 70 family subunit  YP_002137397  decreased coverage  0.00000689788  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0634  CDS  NC_011146  754441  754959  +  519  peptide deformylase  YP_002137458  decreased coverage  0.00220243  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0645  CDS  NC_011146  767516  767716  +  201  cold-shock DNA-binding domain protein  YP_002137469  decreased coverage  0.0000000155303  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0655  CDS  NC_011146  776632  778260  -  1629  integral membrane sensor signal transduction histidine kinase  YP_002137479  decreased coverage  0.0000210229  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0687  CDS  NC_011146  813701  815185  -  1485  peptidase M16 domain protein  YP_002137510  decreased coverage  0.00118117  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0722  CDS  NC_011146  853126  854328  -  1203  hypothetical protein  YP_002137544  decreased coverage  0.00000304436  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0806  CDS  NC_011146  949165  950037  -  873  protein of unknown function DUF6 transmembrane  YP_002137625  decreased coverage  0.0000304842  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0819  CDS  NC_011146  970474  971025  +  552  hypothetical protein  YP_002137638  decreased coverage  0.0000000980503  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0820  CDS  NC_011146  971027  971557  +  531  hypothetical protein  YP_002137639  decreased coverage  0.000000126881  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0835  CDS  NC_011146  987164  988528  +  1365  regulator of chromosome condensation, RCC1  YP_002137654  decreased coverage  0.0000342625  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0928  CDS  NC_011146  1093415  1093786  +  372  30S ribosomal protein S12  YP_002137745  decreased coverage  0.000000041416  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0935  CDS  NC_011146  1099345  1099629  +  285  50S ribosomal protein L23  YP_002137752  decreased coverage  0.000000134151  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0936  CDS  NC_011146  1099653  1100477  +  825  50S ribosomal protein L2  YP_002137753  decreased coverage  0.00000014248  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0970  CDS  NC_011146  1121990  1123201  +  1212  tyrosyl-tRNA synthetase  YP_002137787  decreased coverage  0.00000274252  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_0980  CDS  NC_011146  1138104  1138328  +  225  RNA chaperone Hfq  YP_002137797  decreased coverage  0.00000000997875  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1006  CDS  NC_011146  1163939  1164877  +  939  hypothetical protein  YP_002137823  decreased coverage  0.000000318569  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1102  CDS  NC_011146  1274551  1275309  -  759  cytochrome c family protein  YP_002137918  decreased coverage  0.000000169196  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1103  CDS  NC_011146  1275685  1276086  -  402  nucleic acid binding OB-fold tRNA/helicase-type  YP_002137919  decreased coverage  0.0000000179388  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1104  CDS  NC_011146  1276150  1276548  -  399  hypothetical protein  YP_002137920  decreased coverage  0.000000020145  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1105  CDS  NC_011146  1276756  1277493  +  738  glycosyl transferase family 2  YP_002137921  decreased coverage  0.000000104847  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1106  CDS  NC_011146  1277565  1279382  -  1818  TPR repeat-containing protein  YP_002137922  decreased coverage  0.0000356395  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1131  CDS  NC_011146  1307240  1308550  -  1311  cytochrome c family protein  YP_002137947  decreased coverage  0.00000220397  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1132  CDS  NC_011146  1308919  1310271  -  1353  OmpA/MotB domain protein  YP_002137948  decreased coverage  0.00000365045  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1209  CDS  NC_011146  1402597  1403805  -  1209  hypothetical protein  YP_002138024  decreased coverage  0.00000156557  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1210  CDS  NC_011146  1403940  1404041  +  102  hypothetical protein  YP_002138025  decreased coverage  0.00000000719732  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1211  CDS  NC_011146  1404044  1404409  +  366  hypothetical protein  YP_002138026  decreased coverage  0.000000024184  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1268  CDS  NC_011146  1464794  1465207  +  414  transcriptional regulator, BadM/Rrf2 family  YP_002138083  decreased coverage  0.000000462831  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1275  CDS  NC_011146  1473762  1474037  +  276  histone family protein DNA-binding protein  YP_002138090  decreased coverage  0.0000000292942  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1298  CDS  NC_011146  1499588  1500964  -  1377  threonine synthase  YP_002138113  decreased coverage  0.00000609388  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1299  CDS  NC_011146  1501424  1501906  +  483  hypothetical protein  YP_002138114  decreased coverage  0.0000000613288  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1312  CDS  NC_011146  1516183  1516287  +  105  hypothetical protein  YP_002138127  decreased coverage  0.00000202946  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1313  CDS  NC_011146  1516361  1517218  +  858  actin-like ATPase  YP_002138128  decreased coverage  0.000000221446  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1314  CDS  NC_011146  1517267  1517698  +  432  GreA/GreB family elongation factor  YP_002138129  decreased coverage  0.000012809  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1329  CDS  NC_011146  1533066  1533494  -  429  transcriptional regulator, MerR family  YP_002138144  decreased coverage  0.0000000199488  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1341  CDS  NC_011146  1545994  1547163  +  1170  S-adenosylmethionine synthetase  YP_002138156  decreased coverage  0.00000125757  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1431  CDS  NC_011146  1653545  1654618  +  1074  6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase  YP_002138245  decreased coverage  0.000103725  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1517  CDS  NC_011146  1755549  1757543  -  1995  SSS sodium solute transporter superfamily  YP_002138331  decreased coverage  0.000116414  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1518  CDS  NC_011146  1757560  1757871  -  312  protein of unknown function DUF485  YP_002138332  decreased coverage  0.0000000119739  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1566  CDS  NC_011146  1814137  1814430  -  294  hypothetical protein  YP_002138380  decreased coverage  0.0000000213477  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1567  CDS  NC_011146  1814665  1816089  +  1425  phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I  YP_002138381  decreased coverage  0.00000749576  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1646  CDS  NC_011146  1911138  1912514  -  1377  carboxyl-terminal protease  YP_002138460  decreased coverage  0.0000394964  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1699  CDS  NC_011146  1963334  1964608  +  1275  Radical SAM domain protein  YP_002138512  decreased coverage  0.0000206113  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1883  CDS  NC_011146  2180382  2182181  -  1800  GTP-binding protein LepA  YP_002138693  decreased coverage  0.00616157  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_1907  CDS  NC_011146  2208359  2208640  -  282  plasmid maintenance system killer  YP_002138717  decreased coverage  0.00000193605  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2020  CDS  NC_011146  2324679  2326325  +  1647  long-chain-fatty-acid--CoA ligase  YP_002138829  decreased coverage  0.00014741  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2044  CDS  NC_011146  2351555  2352814  -  1260  aromatic hydrocarbon degradation membrane protein  YP_002138853  decreased coverage  0.00212006  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2093  CDS  NC_011146  2420361  2421035  -  675  outer membrane chaperone Skp (OmpH)  YP_002138902  decreased coverage  0.00000603573  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2135  CDS  NC_011146  2483671  2484345  +  675  protein of unknown function UPF0005  YP_002138944  decreased coverage  0.000000126881  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2194  CDS  NC_011146  2553638  2555392  -  1755  indolepyruvate ferredoxin oxidoreductase, alpha subunit  YP_002139002  decreased coverage  0.00113388  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2195  CDS  NC_011146  2555724  2556059  +  336  membrane protein of unknown function  YP_002139003  decreased coverage  0.00000942046  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2213  CDS  NC_011146  2574916  2575194  -  279  hypothetical protein  YP_002139021  decreased coverage  0.0000000153752  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2226  CDS  NC_011146  2589884  2592274  +  2391  multi-sensor hybrid histidine kinase  YP_002139034  decreased coverage  0.000698755  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2323  CDS  NC_011146  2696088  2697110  +  1023  hypothetical protein  YP_002139131  decreased coverage  0.00000105852  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2338  CDS  NC_011146  2714554  2715309  +  756  triosephosphate isomerase  YP_002139146  decreased coverage  0.000000215074  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2356  CDS  NC_011146  2734204  2734818  +  615  hypothetical protein  YP_002139164  decreased coverage  0.00137042  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2389  CDS  NC_011146  2767906  2769753  -  1848  TonB-dependent receptor plug  YP_002139195  decreased coverage  0.000607441  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2446  CDS  NC_011146  2835744  2838242  +  2499  glycogen/starch/alpha-glucan phosphorylase  YP_002139250  decreased coverage  0.00073927  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2465  CDS  NC_011146  2854069  2854446  -  378  hypothetical protein  YP_002139269  decreased coverage  0.000000067501  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2475  CDS  NC_011146  2868327  2869265  +  939  hypothetical protein  YP_002139279  decreased coverage  0.00000341463  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2561  CDS  NC_011146  2972457  2973215  -  759  undecaprenol kinase  YP_002139365  decreased coverage  0.0000943331  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2627  CDS  NC_011146  3042640  3043893  -  1254  phosphate-selective porin O and P  YP_002139431  decreased coverage  0.00186911  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2696    NC_011146  3116611  3117057  -  447      decreased coverage  0.000000042627  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2698  CDS  NC_011146  3117181  3118068  +  888  polysaccharide deacetylase  YP_002139498  decreased coverage  0.000000289703  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2702  CDS  NC_011146  3119626  3120825  -  1200  SAM-dependent methyltransferase-like protein  YP_002139502  decreased coverage  0.00000137033  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2712  CDS  NC_011146  3129740  3130819  -  1080  DNA protecting protein DprA  YP_002139512  decreased coverage  0.00267536  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2725  CDS  NC_011146  3152244  3153722  +  1479  leucyl aminopeptidase  YP_002139525  decreased coverage  0.00941459  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2756  CDS  NC_011146  3185359  3186126  -  768  30S ribosomal protein S2  YP_002139556  decreased coverage  0.000868227  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2770  CDS  NC_011146  3197178  3197573  -  396  hypothetical protein  YP_002139570  decreased coverage  0.00204596  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2836  CDS  NC_011146  3263035  3264201  -  1167  peptidase M24  YP_002139636  decreased coverage  0.00000117604  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2937  CDS  NC_011146  3392294  3392569  +  276  CopG domain protein DNA-binding domain protein  YP_002139736  decreased coverage  0.0000000307395  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2986  CDS  NC_011146  3455130  3456002  -  873  hypothetical protein  YP_002139785  decreased coverage  0.000000514087  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2995  CDS  NC_011146  3463051  3465174  -  2124  N-6 DNA methylase  YP_002139794  decreased coverage  0.00439445  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_2996  CDS  NC_011146  3465330  3465995  -  666  Resolvase domain  YP_002139795  decreased coverage  0.000012222  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_3078  CDS  NC_011146  3561439  3561777  -  339  nitrogen regulatory protein P-II  YP_002139876  decreased coverage  0.0000004264  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_3089  CDS  NC_011146  3573616  3574416  -  801  pseudouridine synthase  YP_002139887  decreased coverage  0.000000212991  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_3106  CDS  NC_011146  3593882  3594622  -  741  3-oxoacyl-(acyl-carrier-protein) reductase  YP_002139904  decreased coverage  0.00000229278  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_3192  CDS  NC_011146  3680436  3681572  -  1137  Integrase catalytic region  YP_002139989  decreased coverage  0.00354129  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_3237  CDS  NC_011146  3728428  3728862  +  435  pyridoxamine 5'-phosphate oxidase-related FMN-binding  YP_002140030  decreased coverage  0.000891571  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_3255  CDS  NC_011146  3746037  3747791  -  1755  30S ribosomal protein S1  YP_002140048  decreased coverage  0.0000271492  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_3267  CDS  NC_011146  3758867  3760057  +  1191  hypothetical protein  YP_002140060  decreased coverage  0.0000221344  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_3291  CDS  NC_011146  3784336  3785091  +  756  hypothetical protein  YP_002140084  decreased coverage  0.000000286826  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_3334  CDS  NC_011146  3829961  3830626  -  666  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family  YP_002140125  decreased coverage  0.0000562871  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_3454  CDS  NC_011146  3965220  3966578  -  1359  ResB family protein  YP_002140243  decreased coverage  0.00000344779  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
Gbem_3499  CDS  NC_011146  4009281  4009814  -  534  hypothetical protein  YP_002140288  decreased coverage  0.0000916771  n/a    Geobacter bemidjiensis Bem  Bacteria 
 
 
-
 
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