163 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Shew185_0021  CDS  NC_009665  27429  27737  -  309  regulatory protein ArsR  YP_001364257  decreased coverage  0.00282375  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0230  CDS  NC_009665  264291  265544  -  1254  tetratricopeptide domain-containing protein  YP_001364464  decreased coverage  0.000000773017  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0254  CDS  NC_009665  293625  294311  -  687  two component transcriptional regulator  YP_001364488  decreased coverage  0.0000000326652  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0255  CDS  NC_009665  294692  295216  +  525  protein of unknown function Spy-related  YP_001364489  decreased coverage  0.0000430973  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0375  CDS  NC_009665  419390  420613  -  1224  phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase  YP_001364607  decreased coverage  0.000093219  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0376  CDS  NC_009665  420736  421413  +  678  DNA repair protein RadC  YP_001364608  decreased coverage  0.000147811  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0405  CDS  NC_009665  454474  455661  +  1188  cell division protein FtsZ  YP_001364637  decreased coverage  0.0000000119039  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0430  CDS  NC_009665  485574  487967  -  2394  TonB-dependent receptor  YP_001364661  decreased coverage  0.0000261093  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0555  CDS  NC_009665  639914  641281  +  1368  major facilitator transporter  YP_001364786  decreased coverage  0.0000000065492  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0568  CDS  NC_009665  658564  659733  +  1170  UDP-glucose/GDP-mannose dehydrogenase  YP_001364796  decreased coverage  0.00339328  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0604  CDS  NC_009665  722296  722979  +  684  two component transcriptional regulator  YP_001364828  decreased coverage  0.00704602  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0687  CDS  NC_009665  831307  832038  -  732  ABC transporter related  YP_001364907  decreased coverage  0.000839172  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0688  CDS  NC_009665  832035  832589  -  555  cell envelope biogenesis YhbN  YP_001364908  decreased coverage  0.00274419  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0701  CDS  NC_009665  843022  844134  +  1113  AFG1 family ATPase  YP_001364921  decreased coverage  0.00000000196074  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0719  CDS  NC_009665  861501  861965  -  465  putative chemotaxis protein CheX  YP_001364939  decreased coverage  0.00000000137536  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0729  CDS  NC_009665  870914  871522  -  609  hypothetical protein  YP_001364949  decreased coverage  0.000945881  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0730  CDS  NC_009665  871519  871749  -  231  hypothetical protein  YP_001364950  decreased coverage  0.00157281  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0789  CDS  NC_009665  923040  924080  -  1041  porin  YP_001365009  decreased coverage  0.00000000129455  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0800  CDS  NC_009665  935835  937085  +  1251  RND family efflux transporter MFP subunit  YP_001365020  decreased coverage  0.00000000642362  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0848  CDS  NC_009665  1006250  1007164  -  915  glutamate--tRNA ligase  YP_001365065  decreased coverage  0.00000000166391  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0849  CDS  NC_009665  1007328  1007771  -  444  TraR/DksA family transcriptional regulator  YP_001365066  decreased coverage  0.000000000107681  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0892  CDS  NC_009665  1055062  1056036  -  975  hypothetical protein  YP_001365109  decreased coverage  0.0000294447  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0893  CDS  NC_009665  1056275  1059130  +  2856  bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase  YP_001365110  decreased coverage  0.00037517  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0909  CDS  NC_009665  1078841  1079755  -  915  ErfK/YbiS/YcfS/YnhG family protein  YP_001365126  decreased coverage  0.00324267  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0936  CDS  NC_009665  1116245  1117651  +  1407  hypothetical protein  YP_001365153  decreased coverage  0.0000000104038  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0971  CDS  NC_009665  1158731  1159246  +  516  hypothetical protein  YP_001365187  decreased coverage  0.00218395  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1035  CDS  NC_009665  1231926  1232921  -  996  polyprenyl synthetase  YP_001365250  decreased coverage  0.00000000587704  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1048  CDS  NC_009665  1243057  1244361  -  1305  SurA domain-containing protein  YP_001365263  decreased coverage  0.000188646  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1069  CDS  NC_009665  1268476  1268781  +  306  hypothetical protein  YP_001365284  decreased coverage  0.0000000000277131  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1085  CDS  NC_009665  1283224  1283985  -  762  putative lipoprotein  YP_001365300  decreased coverage  0.0000000446586  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1089  CDS  NC_009665  1288861  1289328  -  468  hypothetical protein  YP_001365304  decreased coverage  0.000000360525  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1111  CDS  NC_009665  1320923  1321879  -  957  transaldolase B  YP_001365326  decreased coverage  0.00000240039  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1112  CDS  NC_009665  1322130  1323239  -  1110  OmpA/MotB domain-containing protein  YP_001365327  decreased coverage  0.00190106  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1118  CDS  NC_009665  1330607  1330873  -  267  30S ribosomal protein S20  YP_001365333  decreased coverage  0.000000000408096  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1144  CDS  NC_009665  1363308  1364243  +  936  ATPase BadF/BadG/BcrA/BcrD type  YP_001365359  decreased coverage  0.000000000862311  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1153  CDS  NC_009665  1374155  1375651  +  1497  aldehyde dehydrogenase  YP_001365368  decreased coverage  0.00734271  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1166  CDS  NC_009665  1391453  1392553  +  1101  extracellular solute-binding protein  YP_001365381  decreased coverage  0.0000290123  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1170  CDS  NC_009665  1395846  1397132  +  1287  FAD dependent oxidoreductase  YP_001365385  decreased coverage  0.000237219  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1183  CDS  NC_009665  1415528  1416883  -  1356  Beta-glucosidase  YP_001365398  decreased coverage  0.0012185  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1184    NC_009665  1417151  1418446  +  1296      decreased coverage  0.0000735175  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1190  CDS  NC_009665  1428993  1429436  -  444  GatB/Yqey domain-containing protein  YP_001365404  decreased coverage  0.00000373209  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1191  CDS  NC_009665  1429443  1429658  -  216  30S ribosomal protein S21  YP_001365405  decreased coverage  0.0000011604  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1192  CDS  NC_009665  1429874  1430890  +  1017  putative DNA-binding/iron metalloprotein/AP endonuclease  YP_001365406  decreased coverage  0.0000059982  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1244  CDS  NC_009665  1485237  1486154  +  918  signal peptidase I  YP_001365458  decreased coverage  0.00000321734  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1285  CDS  NC_009665  1529566  1530216  -  651  two component LuxR family transcriptional regulator  YP_001365498  decreased coverage  0.000337392  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1286  CDS  NC_009665  1530245  1531423  -  1179  integral membrane sensor signal transduction histidine kinase  YP_001365499  decreased coverage  0.00000000249738  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1306  CDS  NC_009665  1555553  1558015  -  2463  TonB-dependent receptor plug  YP_001365519  decreased coverage  0.00000196501  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1445  CDS  NC_009665  1745241  1745969  +  729  30S ribosomal protein S2  YP_001365658  decreased coverage  0.0000000563194  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1481  CDS  NC_009665  1789678  1791216  +  1539  transcriptional regulator, TyrR  YP_001365694  decreased coverage  0.000204273  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1529  CDS  NC_009665  1849168  1849989  -  822  hypothetical protein  YP_001365740  decreased coverage  0.00000187706  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1578  CDS  NC_009665  1907448  1909400  -  1953  decaheme cytochrome c  YP_001365788  decreased coverage  0.0000205402  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1584  CDS  NC_009665  1917935  1920229  +  2295  ferrous iron transport protein B  YP_001365794  decreased coverage  0.0000129381  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1641  CDS  NC_009665  1988593  1989894  +  1302  peptidase M23B  YP_001365849  decreased coverage  0.00000435092  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1659  CDS  NC_009665  2006283  2007980  -  1698  signal transduction histidine kinase, LytS  YP_001365867  decreased coverage  0.000000213246  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1676  CDS  NC_009665  2025052  2025792  +  741  hypothetical protein  YP_001365884  decreased coverage  0.0089383  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1706  CDS  NC_009665  2051231  2052790  -  1560  sulphate transporter  YP_001365912  decreased coverage  0.000000026912  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1728  CDS  NC_009665  2079833  2080579  -  747  UMP phosphatase  YP_001365934  decreased coverage  0.0000000338596  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1763  CDS  NC_009665  2123078  2123716  +  639  pyridoxamine 5'-phosphate oxidase  YP_001365969  decreased coverage  0.0024682  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1794  CDS  NC_009665  2155719  2157953  +  2235  TonB-dependent receptor  YP_001366000  decreased coverage  0.00000583553  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1824  CDS  NC_009665  2187704  2188192  +  489  CreA family protein  YP_001366030  decreased coverage  0.00367873  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1834  CDS  NC_009665  2201489  2202475  -  987  alpha-L-glutamate ligase  YP_001366040  decreased coverage  0.0000000258771  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1835  CDS  NC_009665  2202496  2202945  -  450  hypothetical protein  YP_001366041  decreased coverage  0.000000000103495  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1852  CDS  NC_009665  2214109  2214471  -  363  hypothetical protein  YP_001366058  decreased coverage  0.000559481  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1861  CDS  NC_009665  2219983  2221251  +  1269  phage integrase family protein  YP_001366067  decreased coverage  0.00488759  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1881  CDS  NC_009665  2246629  2247072  +  444  protein tyrosine phosphatase  YP_001366087  decreased coverage  0.00734553  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1922  CDS  NC_009665  2290020  2291648  +  1629  glucan biosynthesis protein G  YP_001366128  decreased coverage  0.0000209795  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1940  CDS  NC_009665  2316575  2317975  -  1401  asparaginyl-tRNA synthetase  YP_001366146  decreased coverage  0.0000000174697  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1941  CDS  NC_009665  2318126  2318461  +  336  hypothetical protein  YP_001366147  decreased coverage  0.0000000070025  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1942  CDS  NC_009665  2318526  2319113  -  588  NUDIX hydrolase  YP_001366148  decreased coverage  0.0000000158411  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1943  CDS  NC_009665  2319145  2320557  -  1413  para-aminobenzoate synthase, subunit I  YP_001366149  decreased coverage  0.00000110873  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1944  CDS  NC_009665  2320677  2322221  +  1545  tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit  YP_001366150  decreased coverage  0.00000179497  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1951  CDS  NC_009665  2332795  2334087  -  1293  phage integrase family protein  YP_001366157  decreased coverage  0.0000646207  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1992  CDS  NC_009665  2372369  2372779  -  411  hypothetical protein  YP_001366198  decreased coverage  0.00734553  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1993  CDS  NC_009665  2372816  2373073  -  258  hypothetical protein  YP_001366199  decreased coverage  0.00815859  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2001  CDS  NC_009665  2383486  2386089  -  2604  TonB-dependent receptor  YP_001366207  decreased coverage  0.00988263  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2011  CDS  NC_009665  2398699  2399490  -  792  hydroxyacylglutathione hydrolase  YP_001366217  decreased coverage  0.00000000146784  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2012  CDS  NC_009665  2399645  2400382  +  738  methyltransferase type 11  YP_001366218  decreased coverage  0.000000000922882  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2013  CDS  NC_009665  2400416  2401354  +  939  LysR family transcriptional regulator  YP_001366219  decreased coverage  0.00000000207825  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2017  CDS  NC_009665  2404833  2406815  +  1983  sodium/hydrogen exchanger  YP_001366223  decreased coverage  0.0000155921  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2056  CDS  NC_009665  2468063  2468731  +  669  putative sulfite oxidase subunit YedZ  YP_001366261  decreased coverage  0.0000305808  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2057  CDS  NC_009665  2468890  2469300  -  411  lactoylglutathione lyase  YP_001366262  decreased coverage  0.00000866783  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2059  CDS  NC_009665  2470032  2470673  -  642  endonuclease III  YP_001366264  decreased coverage  0.00000403968  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2060  CDS  NC_009665  2470911  2471609  -  699  electron transport complex RsxE subunit  YP_001366265  decreased coverage  0.0000214893  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2089  CDS  NC_009665  2495782  2497368  +  1587  hypothetical protein  YP_001366294  decreased coverage  0.00551419  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2112  CDS  NC_009665  2520063  2520824  +  762  DNA adenine methylase  YP_001366317  decreased coverage  0.0000292224  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2127  CDS  NC_009665  2536562  2538841  +  2280  acyl-CoA dehydrogenase  YP_001366332  decreased coverage  0.00720758  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2130  CDS  NC_009665  2541904  2543376  +  1473  glucose-6-phosphate 1-dehydrogenase  YP_001366335  decreased coverage  0.00145031  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2154  CDS  NC_009665  2569077  2569976  -  900  hypothetical protein  YP_001366359  decreased coverage  0.00000000926677  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2166  CDS  NC_009665  2583594  2584073  -  480  hypothetical protein  YP_001366371  decreased coverage  0.000514786  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2181  CDS  NC_009665  2600990  2601946  +  957  hypothetical protein  YP_001366386  decreased coverage  0.0000000022889  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2205  CDS  NC_009665  2632393  2633052  +  660  hypothetical protein  YP_001366407  decreased coverage  0.00000000321186  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2255  CDS  NC_009665  2686764  2688857  -  2094  prolyl oligopeptidase  YP_001366456  decreased coverage  0.00000270623  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2256  CDS  NC_009665  2689069  2689548  -  480  MarR family transcriptional regulator  YP_001366457  decreased coverage  0.000000254584  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2263  CDS  NC_009665  2696364  2697479  +  1116  phage integrase family protein  YP_001366464  decreased coverage  0.00650578  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2272  CDS  NC_009665  2708298  2710055  -  1758  acyl-CoA dehydrogenase domain-containing protein  YP_001366473  decreased coverage  0.00000131801  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2287  CDS  NC_009665  2725465  2728215  -  2751  DNA gyrase, A subunit  YP_001366488  decreased coverage  0.00000928458  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2361  CDS  NC_009665  2817451  2818641  +  1191  glutamine--scyllo-inositol transaminase  YP_001366562  decreased coverage  0.0000203792  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2381  CDS  NC_009665  2838375  2838713  -  339  ferredoxin, 2Fe-2S type, ISC system  YP_001366582  decreased coverage  0.000000000496454  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2382  CDS  NC_009665  2838722  2840584  -  1863  chaperone protein HscA  YP_001366583  decreased coverage  0.000000622111  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2388  CDS  NC_009665  2844046  2844867  -  822  serine O-acetyltransferase  YP_001366589  decreased coverage  0.0000000558111  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
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