96 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Glov_0001  CDS  NC_010814  261  1640  +  1380  chromosomal replication initiation protein  YP_001950260  decreased coverage  0.0000386226  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0015  CDS  NC_010814  16415  16651  +  237  hypothetical protein  YP_001950273  decreased coverage  0.000000246849  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0339  CDS  NC_010814  310701  311321  -  621  SNARE associated Golgi protein  YP_001950587  decreased coverage  0.0000282866  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0366  CDS  NC_010814  339873  340187  +  315  hypothetical protein  YP_001950614  decreased coverage  0.00000356644  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0367  CDS  NC_010814  340321  340914  +  594  recombination protein RecR  YP_001950615  decreased coverage  0.0000104569  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0383  CDS  NC_010814  356542  357678  +  1137  protein of unknown function DUF185  YP_001950631  decreased coverage  0.000105312  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0384  CDS  NC_010814  357675  358355  +  681  Haloacid dehalogenase domain protein hydrolase  YP_001950632  decreased coverage  0.000618634  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0428  CDS  NC_010814  405274  406401  +  1128  hypothetical protein  YP_001950676  decreased coverage  0.0000232153  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0429  CDS  NC_010814  406437  406733  -  297  hypothetical protein  YP_001950677  decreased coverage  0.000000727417  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0475  CDS  NC_010814  450276  450872  +  597  alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen  YP_001950723  decreased coverage  0.00000199876  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0500  CDS  NC_010814  475651  476823  +  1173  hypothetical protein  YP_001950748  decreased coverage  0.0000157411  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0508  CDS  NC_010814  482698  483552  -  855  Methenyltetrahydrofolate cyclohydrolase  YP_001950756  decreased coverage  0.0000347177  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0509  CDS  NC_010814  483781  484002  -  222  regulatory protein, FmdB family  YP_001950757  decreased coverage  0.0000024131  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0628  CDS  NC_010814  629523  629762  -  240  hypothetical protein  YP_001950874  decreased coverage  0.0000374904  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0629  CDS  NC_010814  629905  630597  +  693  transcriptional regulator, Crp/Fnr family  YP_001950875  decreased coverage  0.0000285446  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0758  CDS  NC_010814  777835  779097  +  1263  lipoprotein releasing system, transmembrane protein, LolC/E family  YP_001951004  decreased coverage  0.00020569  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0826  CDS  NC_010814  847712  848527  -  816  tol-pal system protein YbgF  YP_001951071  decreased coverage  0.00000523116  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0827  CDS  NC_010814  848722  850764  +  2043  membrane-bound proton-translocating pyrophosphatase  YP_001951072  decreased coverage  0.000434939  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0839  CDS  NC_010814  859471  860553  +  1083  transposase IS4 family protein  YP_001951083  decreased coverage  0.0000787198  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0883  CDS  NC_010814  910741  911670  -  930  hypothetical protein  YP_001951127  decreased coverage  0.00462477  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0885  CDS  NC_010814  912782  913519  -  738  IstB domain protein ATP-binding protein  YP_001951128  decreased coverage  0.00199941  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1009  CDS  NC_010814  1047919  1049088  +  1170  hypothetical protein  YP_001951252  decreased coverage  0.000550438  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1026  CDS  NC_010814  1067485  1067685  +  201  50S ribosomal protein L31  YP_001951269  decreased coverage  0.000398278  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1027  CDS  NC_010814  1067875  1068567  +  693  FAD-dependent thymidylate synthase  YP_001951270  decreased coverage  0.00194248  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1173  CDS  NC_010814  1226769  1227050  -  282  hypothetical protein  YP_001951415  decreased coverage  0.00000511675  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1174  CDS  NC_010814  1227079  1227414  -  336  hypothetical protein  YP_001951416  decreased coverage  0.00000561092  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1175  CDS  NC_010814  1227474  1228943  -  1470  outer membrane porin FmdC, putative  YP_001951417  decreased coverage  0.000392921  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1242  CDS  NC_010814  1290404  1291255  -  852  Sec-independent protein translocase, TatC subunit  YP_001951484  decreased coverage  0.00016128  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1253  CDS  NC_010814  1301386  1302495  -  1110  hypothetical protein  YP_001951495  decreased coverage  0.000111033  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1263  CDS  NC_010814  1312443  1313354  +  912  ROK family protein  YP_001951505  decreased coverage  0.0000116273  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1264  CDS  NC_010814  1313464  1314672  +  1209  S-layer domain protein  YP_001951506  decreased coverage  0.0000248204  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1358  CDS  NC_010814  1400732  1401271  +  540  50S ribosomal protein L5  YP_001951599  decreased coverage  0.000000713607  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1359  CDS  NC_010814  1401284  1401469  +  186  30S ribosomal protein S14  YP_001951600  decreased coverage  0.000000205599  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1360  CDS  NC_010814  1401500  1401898  +  399  30S ribosomal protein S8  YP_001951601  decreased coverage  0.00000035487  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1375  CDS  NC_010814  1409979  1410431  -  453  hypothetical protein  YP_001951616  decreased coverage  0.00361251  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1376  CDS  NC_010814  1410561  1412774  +  2214  multi-sensor signal transduction histidine kinase  YP_001951617  decreased coverage  0.00550904  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1385  CDS  NC_010814  1421994  1422470  +  477  cyclase/dehydrase  YP_001951626  decreased coverage  0.0000011932  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1386  CDS  NC_010814  1422448  1422708  +  261  hypothetical protein  YP_001951627  decreased coverage  0.000000410347  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1397  CDS  NC_010814  1436458  1438455  +  1998  SSS sodium solute transporter superfamily  YP_001951638  decreased coverage  0.000364072  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1413  CDS  NC_010814  1458453  1458947  -  495  hypothetical protein  YP_001951654  decreased coverage  0.00000721911  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1414  CDS  NC_010814  1458977  1460320  -  1344  restriction modification system DNA specificity domain  YP_001951655  decreased coverage  0.00014984  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1455  CDS  NC_010814  1510424  1513420  -  2997  M6 family metalloprotease domain protein  YP_001951694  decreased coverage  0.00413675  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1543  CDS  NC_010814  1630143  1631384  -  1242  glucose-1-phosphate adenylyltransferase  YP_001951779  decreased coverage  0.00354872  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1636  CDS  NC_010814  1742492  1743868  +  1377  hypothetical protein  YP_001951872  decreased coverage  0.00167198  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1678  CDS  NC_010814  1789889  1790257  +  369  hypothetical protein  YP_001951914  decreased coverage  0.0000430013  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1711  CDS  NC_010814  1816342  1816809  -  468  hypothetical protein  YP_001951947  decreased coverage  0.00000195986  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1712  CDS  NC_010814  1816800  1817069  -  270  hypothetical protein  YP_001951948  decreased coverage  0.000000648384  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1755  CDS  NC_010814  1865938  1866735  -  798  TPR repeat-containing protein  YP_001951991  decreased coverage  0.0000044478  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1769  CDS  NC_010814  1884071  1884565  -  495  phosphopantetheine adenylyltransferase  YP_001952005  decreased coverage  0.0050342  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1770  CDS  NC_010814  1884555  1885124  -  570  methyltransferase  YP_001952006  decreased coverage  0.00583813  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1793  CDS  NC_010814  1907498  1908208  +  711  hypothetical protein  YP_001952029  decreased coverage  0.00000475363  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1794  CDS  NC_010814  1908299  1908805  +  507  Rubrerythrin  YP_001952030  decreased coverage  0.00000201822  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1823  CDS  NC_010814  1943778  1944452  -  675  Tripartite ATP-independent periplasmic transporter DctQ component  YP_001952059  decreased coverage  0.0000404138  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1824  CDS  NC_010814  1944529  1945524  -  996  TRAP dicarboxylate transporter, DctP subunit  YP_001952060  decreased coverage  0.0000127835  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1829  CDS  NC_010814  1950291  1952810  -  2520  integral membrane sensor signal transduction histidine kinase  YP_001952065  decreased coverage  0.00645827  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1855  CDS  NC_010814  1976299  1976970  -  672  ABC-type transport system involved in resistance to organic solvents ATPase component-like protein  YP_001952091  decreased coverage  0.00000195986  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1856  CDS  NC_010814  1977189  1978964  +  1776  indolepyruvate ferredoxin oxidoreductase, alpha subunit  YP_001952092  decreased coverage  0.0012432  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1897  CDS  NC_010814  2022130  2022609  +  480  hypothetical protein  YP_001952133  decreased coverage  0.00778692  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1898  CDS  NC_010814  2022634  2022828  +  195  hypothetical protein  YP_001952134  decreased coverage  0.00913701  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1911  CDS  NC_010814  2037065  2038198  +  1134  lipoprotein, putative  YP_001952147  decreased coverage  0.0000124233  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1912  CDS  NC_010814  2038375  2038593  +  219  translation initiation factor IF-1  YP_001952148  decreased coverage  0.000000211647  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1913  CDS  NC_010814  2038697  2039260  +  564  elongation factor P  YP_001952149  decreased coverage  0.00000066721  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1914  CDS  NC_010814  2039265  2040173  +  909  tRNA synthetase class II (D K and N)  YP_001952150  decreased coverage  0.00000371414  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1915  CDS  NC_010814  2040140  2041504  -  1365  exodeoxyribonuclease VII large subunit  YP_001952151  decreased coverage  0.0000169842  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1993  CDS  NC_010814  2119028  2120806  +  1779  oligoendopeptidase, pepF/M3 family  YP_001952229  decreased coverage  0.000167694  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2213  CDS  NC_010814  2361706  2363622  -  1917  succinate dehydrogenase flavoprotein subunit  YP_001952449  decreased coverage  0.00041911  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2233  CDS  NC_010814  2382488  2384542  +  2055  squalene-hopene cyclase  YP_001952469  decreased coverage  0.000414929  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2464  CDS  NC_010814  2632409  2633608  -  1200  cofactor-independent phosphoglycerate mutase  YP_001952698  decreased coverage  0.00281274  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2513  CDS  NC_010814  2687710  2688792  +  1083  transposase IS4 family protein  YP_001952747  decreased coverage  0.0000127835  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2521  CDS  NC_010814  2695067  2696497  +  1431  tRNA(Ile)-lysidine synthetase  YP_001952755  decreased coverage  0.0000332242  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2601  CDS  NC_010814  2786937  2787566  -  630  hypothetical protein  YP_001952834  decreased coverage  0.00000315726  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2638  CDS  NC_010814  2828192  2829271  -  1080  branched-chain amino acid aminotransferase  YP_001952871  decreased coverage  0.000340961  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2694  CDS  NC_010814  2895850  2896932  -  1083  transposase IS4 family protein  YP_001952927  decreased coverage  0.00558684  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2740  CDS  NC_010814  2940456  2941463  -  1008  PpiC-type peptidyl-prolyl cis-trans isomerase  YP_001952973  decreased coverage  0.00000934934  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2789  CDS  NC_010814  2998375  2998641  +  267  twin-arginine translocation protein, TatA/E family subunit  YP_001953022  decreased coverage  0.00000447102  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2829  CDS  NC_010814  3042534  3044453  -  1920  molecular chaperone DnaK  YP_001953062  decreased coverage  0.000221772  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2950  CDS  NC_010814  3163208  3164536  +  1329  hypothetical protein  YP_001953177  decreased coverage  0.000964645  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2995  CDS  NC_010814  3214396  3215391  +  996  quinone oxidoreductase, YhdH/YhfP family  YP_001953221  decreased coverage  0.00123098  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2996  CDS  NC_010814  3215471  3215629  -  159  hypothetical protein  YP_001953222  decreased coverage  0.0000834169  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3059  CDS  NC_010814  3276663  3278150  +  1488  protein of unknown function DUF344  YP_001953285  decreased coverage  0.0000557156  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3087  CDS  NC_010814  3309620  3309766  -  147  hypothetical protein  YP_001953313  decreased coverage  0.0000027911  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3088  CDS  NC_010814  3309812  3309964  -  153  hypothetical protein  YP_001953314  decreased coverage  0.00000281699  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3108  CDS  NC_010814  3328063  3328254  -  192  hypothetical protein  YP_001953334  decreased coverage  0.00106791  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3168  CDS  NC_010814  3388319  3389254  -  936  conserved hypothetical radical SAM protein  YP_001953394  decreased coverage  0.000379648  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3208  CDS  NC_010814  3429786  3430442  +  657  transcriptional regulator, TraR/DksA family  YP_001953434  decreased coverage  0.0000145805  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3443  CDS  NC_010814  3702776  3703606  -  831  ABC transporter, substrate-binding protein, putative  YP_001953667  decreased coverage  0.00000276268  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3459  CDS  NC_010814  3720229  3720570  +  342  cytochrome c family protein, putative  YP_001953682  decreased coverage  0.000000567709  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3468  CDS  NC_010814  3729213  3730559  -  1347  outer membrane efflux protein  YP_001953691  decreased coverage  0.000163735  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3496  CDS  NC_010814  3755849  3756877  +  1029  signal recognition particle-docking protein FtsY  YP_001953719  decreased coverage  0.00000989715  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3497  CDS  NC_010814  3756900  3757145  +  246  hypothetical protein  YP_001953720  decreased coverage  0.000000341495  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3498  CDS  NC_010814  3757149  3757427  +  279  hypothetical protein  YP_001953721  decreased coverage  0.000000338094  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3540  CDS  NC_010814  3808046  3809374  +  1329  anaerobic C4-dicarboxylate transporter  YP_001953761  decreased coverage  0.000247021  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3549  CDS  NC_010814  3818160  3819341  -  1182  methyl-accepting chemotaxis sensory transducer  YP_001953770  decreased coverage  0.00000818802  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3630  CDS  NC_010814  3904120  3904581  -  462  protein of unknown function DUF163  YP_001953850  decreased coverage  0.00000133759  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3631  CDS  NC_010814  3904594  3905010  -  417  iojap-like protein  YP_001953851  decreased coverage  0.000000986152  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3632  CDS  NC_010814  3905007  3905648  -  642  nicotinate (nicotinamide) nucleotide adenylyltransferase  YP_001953852  decreased coverage  0.00000325022  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
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