118 decreased-coverage genes were found for selected organism/s



Page 1 of 2    << first  < prev  1  2    next >  last >>   


Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Spea_0137  CDS  NC_009901  152488  154326  -  1839  peptidase M14 carboxypeptidase A  YP_001500001  decreased coverage  0.000376748  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0182  CDS  NC_009901  208877  210061  +  1185  elongation factor Tu  YP_001500046  decreased coverage  0.000000366988  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0221  CDS  NC_009901  233942  234538  +  597  alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen  YP_001500084  decreased coverage  0.000000103908  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0334  CDS  NC_009901  376866  378122  -  1257  histidine kinase  YP_001500197  decreased coverage  0.000559138  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0335  CDS  NC_009901  378094  378762  -  669  two component transcriptional regulator  YP_001500198  decreased coverage  0.000018466  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0389  CDS  NC_009901  471188  471493  -  306  DNA-binding protein Fis  YP_001500252  decreased coverage  0.000000131756  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0421  CDS  NC_009901  516799  518226  +  1428  dihydrolipoamide dehydrogenase  YP_001500284  decreased coverage  0.000187748  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0527  CDS  NC_009901  643519  644862  +  1344  glutamate dehydrogenase  YP_001500390  decreased coverage  0.00000736482  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0534  CDS  NC_009901  657864  658310  -  447  3-dehydroquinate dehydratase  YP_001500397  decreased coverage  0.0000000293709  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0571  CDS  NC_009901  701847  702515  +  669  single-strand binding protein  YP_001500434  decreased coverage  0.00000000499632  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0589  CDS  NC_009901  722699  723733  -  1035  porin  YP_001500452  decreased coverage  0.0000000486852  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0735  CDS  NC_009901  912895  914265  +  1371  aspartate kinase III  YP_001500597  decreased coverage  0.000266355  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0788  CDS  NC_009901  974163  976154  +  1992  transketolase  YP_001500650  decreased coverage  0.0000527477  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0830  CDS  NC_009901  1028876  1030588  -  1713  nitrate/nitrite sensor protein NarQ  YP_001500692  decreased coverage  0.00637063  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0838  CDS  NC_009901  1038648  1038764  -  117  hypothetical protein  YP_001500700  decreased coverage  0.00000630457  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0853  CDS  NC_009901  1052566  1052820  +  255  50S ribosomal protein L27  YP_001500715  decreased coverage  0.00000000152445  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0872  CDS  NC_009901  1071648  1072067  +  420  hypothetical protein  YP_001500734  decreased coverage  0.00000181159  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0873  CDS  NC_009901  1072069  1073205  +  1137  secretion protein HlyD family protein  YP_001500735  decreased coverage  0.00000517081  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0919  CDS  NC_009901  1125070  1126368  -  1299  DEAD/DEAH box helicase domain-containing protein  YP_001500781  decreased coverage  0.00000178347  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0978  CDS  NC_009901  1191649  1192713  -  1065  uncharacterized FlgJ-related protein-like protein  YP_001500840  decreased coverage  0.00771467  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1031  CDS  NC_009901  1254502  1255080  +  579  RNA polymerase sigma factor RpoE  YP_001500893  decreased coverage  0.000464646  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1032  CDS  NC_009901  1255104  1255709  +  606  anti sigma-E protein, RseA  YP_001500894  decreased coverage  0.000142789  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1035  CDS  NC_009901  1257261  1259051  +  1791  GTP-binding protein LepA  YP_001500897  decreased coverage  0.000276893  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1080  CDS  NC_009901  1307577  1307843  -  267  30S ribosomal protein S20  YP_001500942  decreased coverage  0.00000335633  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1105  CDS  NC_009901  1341198  1341596  +  399  transposase  YP_001500967  decreased coverage  0.00000000299322  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1106  CDS  NC_009901  1341680  1342432  +  753  integrase catalytic region  YP_001500968  decreased coverage  0.0000000108961  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1107  CDS  NC_009901  1343112  1343390  -  279  hypothetical protein  YP_001500969  decreased coverage  0.00000000149514  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1108  CDS  NC_009901  1343393  1344457  -  1065  A/G-specific adenine glycosylase  YP_001500970  decreased coverage  0.0000000562379  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1109  CDS  NC_009901  1344730  1345443  +  714  tRNA (guanine-N(7)-)-methyltransferase  YP_001500971  decreased coverage  0.00000000726431  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1124  CDS  NC_009901  1362771  1363043  -  273  hypothetical protein  YP_001500986  decreased coverage  0.000000681191  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1125  CDS  NC_009901  1363058  1363606  -  549  protein of unknown function YGGT  YP_001500987  decreased coverage  0.00000165213  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1126  CDS  NC_009901  1363642  1364460  -  819  pyrroline-5-carboxylate reductase  YP_001500988  decreased coverage  0.00000450771  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1164  CDS  NC_009901  1409517  1410620  +  1104  3,4-dihydroxy-2-butanone 4-phosphate synthase  YP_001501026  decreased coverage  0.0000000468547  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1165  CDS  NC_009901  1410766  1411242  +  477  6,7-dimethyl-8-ribityllumazine synthase  YP_001501027  decreased coverage  0.00000000356468  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1306  CDS  NC_009901  1590407  1591681  +  1275  histidyl-tRNA synthetase  YP_001501168  decreased coverage  0.0000890962  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1307  CDS  NC_009901  1591696  1592316  +  621  tetratricopeptide TPR_4  YP_001501169  decreased coverage  0.0000516271  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1438  CDS  NC_009901  1750387  1751853  -  1467  hypothetical protein  YP_001501298  decreased coverage  0.00290508  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1471  CDS  NC_009901  1794316  1794648  +  333  preprotein translocase subunit YajC  YP_001501331  decreased coverage  0.000169079  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1532  CDS  NC_009901  1861254  1862582  -  1329  sodium:dicarboxylate symporter  YP_001501392  decreased coverage  0.000000132104  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1542  CDS  NC_009901  1876020  1877027  -  1008  hypothetical protein  YP_001501402  decreased coverage  0.00000050026  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1606  CDS  NC_009901  1945794  1947068  +  1275  Beta-ketoacyl synthase  YP_001501466  decreased coverage  0.000000886766  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1613  CDS  NC_009901  1953056  1954072  +  1017  aspartate-semialdehyde dehydrogenase  YP_001501473  decreased coverage  0.0000186594  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1650  CDS  NC_009901  1993853  1996351  +  2499  hypothetical protein  YP_001501510  decreased coverage  0.0000305835  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1688  CDS  NC_009901  2051302  2052279  +  978  cell division protein ZipA  YP_001501547  decreased coverage  0.0000000383332  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1712  CDS  NC_009901  2079870  2080424  +  555  D,D-heptose 1,7-bisphosphate phosphatase  YP_001501571  decreased coverage  0.00000000943222  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1747  CDS  NC_009901  2124429  2125283  +  855  phosphonate ABC transporter, periplasmic phosphonate-binding protein  YP_001501605  decreased coverage  0.000000289626  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1799  CDS  NC_009901  2195597  2197681  -  2085  elongation factor G  YP_001501657  decreased coverage  0.000204091  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1800  CDS  NC_009901  2198094  2199434  -  1341  adenosylmethionine-8-amino-7-oxononanoate aminotransferase  YP_001501658  decreased coverage  0.000160977  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1805  CDS  NC_009901  2204080  2204943  +  864  heat shock protein HtpX  YP_001501663  decreased coverage  0.00990556  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1828  CDS  NC_009901  2226691  2228829  +  2139  TonB-dependent receptor  YP_001501686  decreased coverage  0.0000226653  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1837  CDS  NC_009901  2235133  2235819  +  687  ABC transporter related  YP_001501695  decreased coverage  0.000603885  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1838  CDS  NC_009901  2235809  2236900  +  1092  multidrug resistance efflux pump-like protein  YP_001501696  decreased coverage  0.000704068  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1857  CDS  NC_009901  2257913  2260102  -  2190  peptidyl-dipeptidase Dcp  YP_001501715  decreased coverage  0.00000553999  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1938  CDS  NC_009901  2351070  2353118  +  2049  hypothetical protein  YP_001501795  decreased coverage  0.00596375  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1949  CDS  NC_009901  2371305  2373161  +  1857  hypothetical protein  YP_001501806  decreased coverage  0.00000191587  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1950  CDS  NC_009901  2373357  2373533  +  177  ribosome modulation factor  YP_001501807  decreased coverage  0.000000000783446  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1951  CDS  NC_009901  2373668  2374183  -  516  3-hydroxydecanoyl-(acyl carrier protein) dehydratase  YP_001501808  decreased coverage  0.00000000377724  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1968  CDS  NC_009901  2393609  2395546  -  1938  hypothetical protein  YP_001501825  decreased coverage  0.00352196  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1982  CDS  NC_009901  2406610  2407692  +  1083  RND family efflux transporter MFP subunit  YP_001501839  decreased coverage  0.000000542821  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1983  CDS  NC_009901  2407689  2410793  +  3105  acriflavin resistance protein  YP_001501840  decreased coverage  0.000463224  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2051  CDS  NC_009901  2484779  2485306  -  528  flavodoxin FldA  YP_001501906  decreased coverage  0.000000064376  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2094  CDS  NC_009901  2535348  2536550  -  1203  integrase family protein  YP_001501949  decreased coverage  0.000349759  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2111  CDS  NC_009901  2554830  2555492  -  663  hypothetical protein  YP_001501966  decreased coverage  0.0000565103  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2127  CDS  NC_009901  2576334  2578784  -  2451  hypothetical protein  YP_001501982  decreased coverage  0.00224294  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2183  CDS  NC_009901  2646480  2647532  +  1053  hypothetical protein  YP_001502038  decreased coverage  0.0000240525  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2213  CDS  NC_009901  2686237  2686734  -  498  hypothetical protein  YP_001502068  decreased coverage  0.0000117467  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2363  CDS  NC_009901  2881574  2882191  -  618  Holliday junction DNA helicase RuvA  YP_001502218  decreased coverage  0.00132923  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2364  CDS  NC_009901  2882188  2882709  -  522  Holliday junction resolvase  YP_001502219  decreased coverage  0.00103097  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2365  CDS  NC_009901  2882717  2883460  -  744  hypothetical protein  YP_001502220  decreased coverage  0.00180131  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2366  CDS  NC_009901  2883590  2885383  -  1794  aspartyl-tRNA synthetase  YP_001502221  decreased coverage  0.00207934  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2371  CDS  NC_009901  2891025  2892533  +  1509  gonadoliberin III-related protein  YP_001502226  decreased coverage  0.00837826  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2478  CDS  NC_009901  3022869  3023798  -  930  agmatinase  YP_001502333  decreased coverage  0.00187058  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2530  CDS  NC_009901  3081151  3081876  +  726  arginyl-tRNA-protein transferase  YP_001502385  decreased coverage  0.00000125656  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2531  CDS  NC_009901  3081991  3082209  +  219  translation initiation factor IF-1  YP_001502386  decreased coverage  0.000000132982  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2532  CDS  NC_009901  3082342  3084600  -  2259  ATP-dependent Clp protease, ATP-binding subunit clpA  YP_001502387  decreased coverage  0.000101202  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2549  CDS  NC_009901  3101185  3103554  -  2370  phosphoenolpyruvate synthase  YP_001502404  decreased coverage  0.00670387  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2609  CDS  NC_009901  3177827  3179146  +  1320  aromatic hydrocarbon degradation membrane protein  YP_001502464  decreased coverage  0.0000112018  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2610  CDS  NC_009901  3179409  3180497  +  1089  RND family efflux transporter MFP subunit  YP_001502465  decreased coverage  0.00000256578  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2622  CDS  NC_009901  3191827  3192825  +  999  alcohol dehydrogenase  YP_001502477  decreased coverage  0.00523973  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2685  CDS  NC_009901  3273368  3273862  +  495  peptidyl-prolyl cis-trans isomerase cyclophilin type  YP_001502540  decreased coverage  0.00000000342753  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2686  CDS  NC_009901  3273873  3274589  +  717  UDP-2,3-diacylglucosamine hydrolase  YP_001502541  decreased coverage  0.00000000748093  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2791  CDS  NC_009901  3407670  3408536  -  867  acyl-CoA thioesterase II  YP_001502646  decreased coverage  0.000176702  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2792  CDS  NC_009901  3408603  3409538  -  936  short-chain dehydrogenase/reductase SDR  YP_001502647  decreased coverage  0.000504065  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2875  CDS  NC_009901  3512304  3513320  -  1017  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase  YP_001502728  decreased coverage  0.0000000279031  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2935  CDS  NC_009901  3595533  3596222  +  690  two component transcriptional regulator  YP_001502787  decreased coverage  0.000047512  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2936  CDS  NC_009901  3596206  3597759  +  1554  histidine kinase  YP_001502788  decreased coverage  0.00120898  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2969  CDS  NC_009901  3636287  3636976  -  690  two component transcriptional regulator  YP_001502821  decreased coverage  0.000000855765  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2977  CDS  NC_009901  3647968  3648354  +  387  hypothetical protein  YP_001502829  decreased coverage  0.000102577  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3062  CDS  NC_009901  3757370  3757825  -  456  hypothetical protein  YP_001502914  decreased coverage  0.0000000525096  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3063  CDS  NC_009901  3758364  3758699  -  336  preprotein translocase subunit SecG  YP_001502915  decreased coverage  0.000000201334  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3064  CDS  NC_009901  3758701  3759483  -  783  triosephosphate isomerase  YP_001502916  decreased coverage  0.00000137173  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3068  CDS  NC_009901  3764031  3764660  -  630  23S rRNA methyltransferase J  YP_001502920  decreased coverage  0.000000567289  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3077  CDS  NC_009901  3775138  3775755  -  618  peptidylprolyl isomerase FKBP-type  YP_001502929  decreased coverage  0.0000000760442  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3206  CDS  NC_009901  3930329  3932182  -  1854  TonB-dependent receptor plug  YP_001503057  decreased coverage  0.00965358  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3282  CDS  NC_009901  4023415  4024452  +  1038  putative monovalent cation/H+ antiporter subunit B  YP_001503132  decreased coverage  0.000131968  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3303  CDS  NC_009901  4046160  4047254  -  1095  glycine cleavage system aminomethyltransferase T  YP_001503153  decreased coverage  0.00589278  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3322  CDS  NC_009901  4064078  4065676  +  1599  AMP-dependent synthetase and ligase  YP_001503172  decreased coverage  0.000803182  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3347  CDS  NC_009901  4092267  4092977  -  711  DNA-binding transcriptional regulator TorR  YP_001503197  decreased coverage  0.000384276  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3424  CDS  NC_009901  4182920  4185754  -  2835  TonB-dependent receptor  YP_001503272  decreased coverage  0.00012336  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3427  CDS  NC_009901  4189078  4190148  +  1071  permease  YP_001503275  decreased coverage  0.000000478015  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Page 1 of 2    << first  < prev  1  2    next >  last >>