28 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Rpal_0071  CDS  NC_011004  74211  74852  +  642  N-(5'-phosphoribosyl)anthranilate isomerase  YP_001989109  decreased coverage  0.00571088  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_0072  CDS  NC_011004  74866  76080  +  1215  tryptophan synthase subunit beta  YP_001989110  decreased coverage  0.00296113  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_0341  CDS  NC_011004  359903  360211  +  309  protein of unknown function DUF1330  YP_001989377  decreased coverage  0.00521106  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_0829  CDS  NC_011004  874475  875533  -  1059  oligopeptide/dipeptide ABC transporter, ATPase subunit  YP_001989862  decreased coverage  0.00153386  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_1823  CDS  NC_011004  1958066  1959391  +  1326  flagellum-specific ATP synthase  YP_001990824  decreased coverage  0.00582391  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_1824  CDS  NC_011004  1959501  1959929  +  429  flagellar export protein FliJ  YP_001990825  decreased coverage  0.00891428  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_1854  CDS  NC_011004  1991402  1991764  +  363  queuosine biosynthesis protein QueD  YP_001990855  decreased coverage  0.00372153  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_1934  CDS  NC_011004  2085151  2086584  -  1434  Amidase  YP_001990932  decreased coverage  0.000185189  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_2580  CDS  NC_011004  2789588  2789911  -  324  hypothetical protein  YP_001991568  decreased coverage  0.004107  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_2596  CDS  NC_011004  2807457  2807954  -  498  Acireductone dioxygenase ARD  YP_001991584  decreased coverage  0.00332409  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_2608  CDS  NC_011004  2820372  2821751  +  1380  Nitrogenase  YP_001991596  decreased coverage  0.00388329  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_2611  CDS  NC_011004  2823540  2824643  -  1104  integral membrane sensor signal transduction histidine kinase  YP_001991599  decreased coverage  0.00300746  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_2622  CDS  NC_011004  2838170  2840401  -  2232  TonB-dependent receptor plug  YP_001991608  decreased coverage  0.00560047  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_2703  CDS  NC_011004  2934967  2935917  -  951  Alpha/beta hydrolase fold-3 domain protein  YP_001991687  decreased coverage  0.00278676  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_2822  CDS  NC_011004  3066862  3068145  +  1284  FRG domain protein  YP_001991806  decreased coverage  0.008437  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_3091  CDS  NC_011004  3334834  3337188  +  2355  lipopolysaccharide biosynthesis protein  YP_001992072  decreased coverage  0.00715976  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_3182  CDS  NC_011004  3428249  3429016  -  768  stationary phase survival protein SurE  YP_001992161  decreased coverage  0.00064079  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_4054  CDS  NC_011004  4351922  4353676  -  1755  Peptidoglycan glycosyltransferase  YP_001993025  decreased coverage  0.00208935  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_4055  CDS  NC_011004  4353673  4354056  -  384  hypothetical protein  YP_001993026  decreased coverage  0.0047292  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_4056  CDS  NC_011004  4354053  4355051  -  999  S-adenosyl-methyltransferase MraW  YP_001993027  decreased coverage  0.00662143  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_4071  CDS  NC_011004  4373195  4374247  -  1053  arsenical-resistance protein  YP_001993042  decreased coverage  0.00163154  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_4072  CDS  NC_011004  4374374  4374799  -  426  arsenate reductase  YP_001993043  decreased coverage  0.00124746  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_4225  CDS  NC_011004  4535169  4535456  +  288  Excinuclease ABC C subunit domain protein  YP_001993196  decreased coverage  0.0073463  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_4278  CDS  NC_011004  4605811  4606350  -  540  transcriptional regulator, MarR family  YP_001993249  decreased coverage  0.00638818  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_4279  CDS  NC_011004  4606596  4607402  +  807  2-oxo-hepta-3-ene-1,7-dioic acid hydratase  YP_001993250  decreased coverage  0.00917502  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_4293  CDS  NC_011004  4619428  4620219  -  792  PGAP1 family protein  YP_001993264  decreased coverage  0.00000482527  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_4578  CDS  NC_011004  4933560  4934708  -  1149  UDP-N-acetylglucosamine 2-epimerase  YP_001993547  decreased coverage  0.00259669  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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Rpal_5192  CDS  NC_011004  5593933  5594661  +  729  putative exported protein of unknown function  YP_001994155  decreased coverage  0.00638818  n/a    Rhodopseudomonas palustris TIE-1  Bacteria 
 
 
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