81 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Rleg2_0065  CDS  NC_011369  65343  66056  714  pyrimidine 5'-nucleotidase  YP_002279594  normal  0.284923  decreased coverage  0.00705345  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_0066  CDS  NC_011369  66160  67233  1074  methylated-DNA/protein-cysteine methyltransferase  YP_002279595  normal  0.202121  decreased coverage  0.00876972  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_0151  CDS  NC_011369  147731  148720  990  periplasmic binding protein/LacI transcriptional regulator  YP_002279679  decreased coverage  0.00856305  normal  0.0288368  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_0157  CDS  NC_011369  153418  155442  2025  ABC transporter related  YP_002279685  normal  decreased coverage  0.0036118  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_0242  CDS  NC_011369  247053  247271  219  translation initiation factor IF-1  YP_002279768  decreased coverage  0.00952866  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_0300  CDS  NC_011369  307169  308077  909  MCP methyltransferase, CheR-type  YP_002279825  decreased coverage  0.0000961073  normal  0.256387  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_0301  CDS  NC_011369  308074  309117  1044  chemotaxis-specific methylesterase  YP_002279826  decreased coverage  0.0058991  normal  0.277183  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_0302  CDS  NC_011369  309119  309508  390  response regulator receiver protein  YP_002279827  decreased coverage  0.00186383  normal  0.501704  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_0374  CDS  NC_011369  381782  383191  1410  transcriptional regulator, XRE family  YP_002279899  normal  0.152873  decreased coverage  0.00046899  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_0375  CDS  NC_011369  383318  384415  1098  extracellular solute-binding protein family 1  YP_002279900  hitchhiker  0.00751674  decreased coverage  0.000421612  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_0376  CDS  NC_011369  384505  385647  1143  spermidine/putrescine ABC transporter ATPase subunit  YP_002279901  decreased coverage  0.000938132  hitchhiker  0.00113993  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_0389  CDS  NC_011369  402484  402966  483  iron-responsive transcriptional regulator  YP_002279914  decreased coverage  0.00187363  normal  0.229909  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_0545  CDS  NC_011369  564071  567406  3336  protein of unknown function DUF1217  YP_002280068  decreased coverage  0.000988824  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_0691  CDS  NC_011369  720221  720868  648  hypothetical protein  YP_002280213  decreased coverage  0.00140732  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_0692  CDS  NC_011369  720898  721173  276  hypothetical protein  YP_002280214  decreased coverage  0.00247735  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_0693  CDS  NC_011369  721383  721610  228  hypothetical protein  YP_002280215  decreased coverage  0.00278444  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_0816  CDS  NC_011369  831908  832636  729  protein of unknown function DUF899 thioredoxin family protein  YP_002280336  decreased coverage  0.00565144  normal  0.265134  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_0882  CDS  NC_011369  899337  899759  423  Fe-S metabolism associated SufE  YP_002280402  decreased coverage  0.0000850545  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_0926  CDS  NC_011369  940497  941906  1410  integral membrane sensor signal transduction histidine kinase  YP_002280446  normal  0.147036  decreased coverage  0.00245502  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_0927  CDS  NC_011369  942042  944999  2958  bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase  YP_002280447  normal  decreased coverage  0.00438404  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1070  CDS  NC_011369  1089323  1090813  1491  leucyl aminopeptidase  YP_002280590  normal  0.32941  decreased coverage  0.00000385423  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1071  CDS  NC_011369  1090813  1091262  450  DNA polymerase III subunit chi  YP_002280591  normal  0.300833  decreased coverage  0.00000213889  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1072  CDS  NC_011369  1091362  1092288  927  Galactose 1-dehydrogenase  YP_002280592  normal  0.524055  decreased coverage  0.00000279105  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1073  CDS  NC_011369  1092403  1094445  2043  Prolyl oligopeptidase  YP_002280593  normal  0.594316  decreased coverage  0.00000514493  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1074  CDS  NC_011369  1094512  1095354  843  polysaccharide deacetylase  YP_002280594  normal  decreased coverage  0.00000250549  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1084  CDS  NC_011369  1103230  1103484  255  molybdopterin converting factor, subunit 1  YP_002280604  normal  decreased coverage  0.00000213889  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1085  CDS  NC_011369  1103481  1104071  591  CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase  YP_002280605  normal  decreased coverage  0.00000226763  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1086  CDS  NC_011369  1104276  1106318  2043  excinuclease ABC subunit C  YP_002280606  normal  decreased coverage  0.00000501867  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1132  CDS  NC_011369  1148833  1149228  396  hypothetical protein  YP_002280652  decreased coverage  0.0000400667  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1233  CDS  NC_011369  1246967  1248937  1971  acyltransferase 3  YP_002280753  decreased coverage  0.00523739  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1282  CDS  NC_011369  1300284  1300748  465  hypothetical protein  YP_002280802  decreased coverage  0.00821559  normal  0.267262  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1294  CDS  NC_011369  1314040  1316412  2373  ribonuclease R  YP_002280814  normal  0.501938  decreased coverage  0.00167989  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1295  CDS  NC_011369  1316414  1319068  2655  DNA topoisomerase I  YP_002280815  normal  0.722616  decreased coverage  0.00167989  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1296  CDS  NC_011369  1319240  1320382  1143  DNA protecting protein DprA  YP_002280816  normal  0.857359  decreased coverage  0.000779051  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1300  CDS  NC_011369  1323469  1325127  1659  acyl-CoA dehydrogenase domain protein  YP_002280820  decreased coverage  0.0000933143  hitchhiker  0.00773759  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1301  CDS  NC_011369  1325415  1325624  210  hypothetical protein  YP_002280821  decreased coverage  0.00000150505  hitchhiker  0.00458479  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1302  CDS  NC_011369  1325766  1328663  2898  ribonuclease, Rne/Rng family  YP_002280822  decreased coverage  0.00000158665  normal  0.0123334  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1347  CDS  NC_011369  1369681  1370214  534  50S ribosomal protein L6  YP_002280867  decreased coverage  0.0000134886  normal  0.277418  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1355  CDS  NC_011369  1374951  1375340  390  30S ribosomal protein S11  YP_002280875  decreased coverage  0.00844113  normal  0.387403  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1383  CDS  NC_011369  1404724  1406379  1656  glucose-methanol-choline oxidoreductase  YP_002280903  decreased coverage  0.00471975  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1449  CDS  NC_011369  1472102  1472782  681  HAD-superfamily hydrolase, subfamily IA, variant 3  YP_002280969  decreased coverage  0.0077861  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1673  CDS  NC_011369  1702849  1703430  582  NAD(P)H dehydrogenase (quinone)  YP_002281187  decreased coverage  0.0000846124  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1676  CDS  NC_011369  1706151  1707014  864  binding-protein-dependent transport systems inner membrane component  YP_002281190  decreased coverage  0.00381914  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1719  CDS  NC_011369  1754655  1755731  1077  basic membrane lipoprotein  YP_002281232  decreased coverage  0.00548824  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1720  CDS  NC_011369  1755875  1756837  963  periplasmic binding protein/LacI transcriptional regulator  YP_002281233  decreased coverage  0.000157019  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1770  CDS  NC_011369  1810819  1812036  1218  ABC transporter related  YP_002281282  normal  0.0636101  decreased coverage  0.00357448  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1818  CDS  NC_011369  1865367  1865621  255  Transglycosylase-associated protein  YP_002281329  normal  0.0629036  decreased coverage  0.000804955  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1819  CDS  NC_011369  1865689  1865970  282  hypothetical protein  YP_002281330  normal  0.0974773  decreased coverage  0.000815621  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1820  CDS  NC_011369  1866190  1868082  1893  peptidyl-prolyl cis-trans isomerase D signal peptide protein  YP_002281331  normal  0.296428  decreased coverage  0.00152652  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1838  CDS  NC_011369  1888011  1889207  1197  protein of unknown function UPF0118  YP_002281349  decreased coverage  0.00200619  normal  0.0419691  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1883  CDS  NC_011369  1928303  1928956  654  HAD-superfamily hydrolase, subfamily IA, variant 1  YP_002281394  decreased coverage  0.00501827  normal  0.0218555  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1900  CDS  NC_011369  1943546  1945015  1470  cysteine desulfurase activator complex subunit SufB  YP_002281411  normal  decreased coverage  0.000572283  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1940  CDS  NC_011369  1983737  1984984  1248  drug resistance transporter, Bcr/CflA subfamily  YP_002281451  decreased coverage  0.00164686  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_1981  CDS  NC_011369  2033734  2034345  612  putative ABC transporter protein  YP_002281492  decreased coverage  0.00566413  normal  0.786267  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_2037  CDS  NC_011369  2099794  2100582  789  short chain dehydrogenase  YP_002281547  decreased coverage  0.00988022  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_2056  CDS  NC_011369  2121555  2122328  774  extracellular solute-binding protein family 3  YP_002281566  decreased coverage  0.00137642  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_2189  CDS  NC_011369  2245110  2245991  882  NmrA family protein  YP_002281696  decreased coverage  0.00531075  normal  0.451733  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_2191  CDS  NC_011369  2247018  2248484  1467  sulphate transporter  YP_002281698  decreased coverage  0.0000878585  normal  0.36183  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_2331  CDS  NC_011369  2391433  2392878  1446  hypothetical protein  YP_002281832  decreased coverage  0.0000542744  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_2459  CDS  NC_011369  2501176  2501484  309  hypothetical protein  YP_002281959  decreased coverage  0.000630866  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_2464  CDS  NC_011369  2502564  2503082  519  Gp157 family protein  YP_002281964  decreased coverage  0.000580757  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_2497  CDS  NC_011369  2529882  2530937  1056  glycosyl transferase family 2  YP_002281997  decreased coverage  0.00316159  normal  0.514307  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_2547  CDS  NC_011369  2577370  2581074  3705  hypothetical protein  YP_002282046  decreased coverage  0.00977627  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_2584  CDS  NC_011369  2621999  2622844  846  outer membrane assembly lipoprotein YfiO  YP_002282081  decreased coverage  0.000140761  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_2643  CDS  NC_011369  2689809  2690870  1062  oxidoreductase domain protein  YP_002282140  decreased coverage  0.000421057  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_2806  CDS  NC_011369  2851779  2852363  585  ATP-dependent Clp protease proteolytic subunit  YP_002282302  normal  0.312252  decreased coverage  0.00941444  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_2807  CDS  NC_011369  2852643  2853407  765  putative periplasmic ligand-binding sensor protein  YP_002282303  normal  0.150844  decreased coverage  0.00905915  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_2808  CDS  NC_011369  2853532  2853996  465  7-cyano-7-deazaguanine reductase  YP_002282304  normal  0.146173  decreased coverage  0.00905915  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_2900  CDS  NC_011369  2953140  2954285  1146  transposase IS4 family protein  YP_002282394  decreased coverage  0.00460334  normal  0.33461  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_2901  CDS  NC_011369  2954731  2956140  1410  protein of unknown function DUF404  YP_002282395  decreased coverage  0.00642999  normal  0.711404  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_3029  CDS  NC_011369  3088014  3089327  1314  dihydropyrimidine dehydrogenase  YP_002282522  decreased coverage  0.00152592  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_3031  CDS  NC_011369  3090066  3091067  1002  transcriptional activator FtrA  YP_002282524  decreased coverage  0.00937108  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_3793  CDS  NC_011369  3924839  3925801  963  hypothetical protein  YP_002283281  decreased coverage  0.00053208  normal  0.21889  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_3798  CDS  NC_011369  3929467  3930528  1062  Lysine--tRNA ligase  YP_002283286  decreased coverage  0.00227981  normal  0.497071  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_3866  CDS  NC_011369  4008719  4009792  1074  protein of unknown function DUF955  YP_002283354  decreased coverage  0.000000210124  normal  0.0502715  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_3874  CDS  NC_011369  4015136  4016230  1095  GTPase ObgE  YP_002283362  normal  decreased coverage  0.00849027  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_3879  CDS  NC_011369  4020844  4021545  702  molybdate ABC transporter permease protein  YP_002283367  normal  0.227386  decreased coverage  0.00905915  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_3880  CDS  NC_011369  4021542  4022609  1068  molybdate ABC transporter, ATPase subunit  YP_002283368  normal  0.314115  decreased coverage  0.00984217  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_3999  CDS  NC_011369  4166767  4167549  783  transcriptional regulator, LuxR family  YP_002283487  decreased coverage  0.0000000117104  normal  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_4364  CDS  NC_011369  4529930  4531309  1380  Allantoinase  YP_002283848  normal  decreased coverage  0.00228036  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
-
 
Rleg2_R0055  tRNA  NC_011369  4011713  4011802  90  tRNA-Ser    normal  0.267129  decreased coverage  0.00667761  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria 
 
 
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