53 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Tmel_0035  CDS  NC_009616  39157  39834  -  678  ABC transporter related  YP_001305299  decreased coverage  0.00000173721  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0053  CDS  NC_009616  57317  57589  -  273  co-chaperonin GroES  YP_001305317  decreased coverage  0.00191023  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0061  CDS  NC_009616  66217  66471  -  255  ribosomal protein S15  YP_001305325  decreased coverage  0.000000587421  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0066  CDS  NC_009616  72024  73235  +  1212  uracil-xanthine permease  YP_001305329  decreased coverage  0.00626483  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0092  CDS  NC_009616  97024  97653  -  630  hemolysin III family channel protein  YP_001305354  decreased coverage  0.0000116234  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0093  CDS  NC_009616  97650  98069  -  420  peptidylprolyl isomerase, FKBP-type  YP_001305355  decreased coverage  0.00000716463  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0104  CDS  NC_009616  106180  107238  -  1059  2-ketoisovalerate ferredoxin reductase  YP_001305366  decreased coverage  0.000893688  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0131  CDS  NC_009616  137473  137745  -  273  hypothetical protein  YP_001305393  decreased coverage  0.00000289357  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_0225  CDS  NC_009616  231522  232313  -  792  tRNA methyltransferase complex GCD14 subunit  YP_001305484  decreased coverage  0.00000107997  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0226  CDS  NC_009616  232327  232743  -  417  hypothetical protein  YP_001305485  decreased coverage  0.000000246842  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0288  CDS  NC_009616  295306  296127  -  822  DegV family protein  YP_001305545  decreased coverage  0.00000196641  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_0310  CDS  NC_009616  316429  316659  -  231  acyl carrier protein  YP_001305567  decreased coverage  0.00336649  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0314  CDS  NC_009616  319913  321172  -  1260  hypothetical protein  YP_001305571  decreased coverage  0.00876267  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0346  CDS  NC_009616  357995  359677  -  1683  methyl-accepting chemotaxis sensory transducer  YP_001305601  decreased coverage  0.00236335  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0352  CDS  NC_009616  364831  365592  -  762  CRISPR-associated Cas5 family protein  YP_001305607  decreased coverage  0.00575907  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0391  CDS  NC_009616  406192  407652  -  1461  Pyrrolo-quinoline quinone  YP_001305645  decreased coverage  0.00019845  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0429  CDS  NC_009616  454834  455112  -  279  histone family protein DNA-binding protein  YP_001305681  decreased coverage  0.00929572  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_0439  CDS  NC_009616  461028  462155  +  1128  DegT/DnrJ/EryC1/StrS aminotransferase  YP_001305691  decreased coverage  0.00930818  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0475  CDS  NC_009616  500973  501926  +  954  lytic transglycosylase, catalytic  YP_001305727  decreased coverage  0.00102618  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0520  CDS  NC_009616  559013  560566  +  1554  hypothetical protein  YP_001305772  decreased coverage  0.00756457  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0556  CDS  NC_009616  589418  590017  +  600  hypothetical protein  YP_001305808  decreased coverage  0.0000794456  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0596  CDS  NC_009616  628161  629333  -  1173  extracellular solute-binding protein  YP_001305848  decreased coverage  0.00439649  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_0726  CDS  NC_009616  763556  764476  -  921  phosphate transporter  YP_001305975  decreased coverage  0.00000419636  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_0741  CDS  NC_009616  782032  782679  -  648  hypothetical protein  YP_001305989  decreased coverage  0.000257839  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_0879  CDS  NC_009616  913696  914019  -  324  hypothetical protein  YP_001306125  decreased coverage  0.0000797435  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_0880  CDS  NC_009616  914089  915252  -  1164  hypothetical protein  YP_001306126  decreased coverage  0.000879825  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_0893  CDS  NC_009616  929767  930477  +  711  nitroreductase  YP_001306139  decreased coverage  0.000576269  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0988  CDS  NC_009616  1007618  1008163  +  546  lipoprotein signal peptidase  YP_001306234  decreased coverage  0.00914153  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0989  CDS  NC_009616  1008030  1008950  +  921  RluA family pseudouridine synthase  YP_001306235  decreased coverage  0.00899774  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_0998  CDS  NC_009616  1019023  1020426  +  1404  metal dependent phosphohydrolase  YP_001306244  decreased coverage  0.000200271  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_1018  CDS  NC_009616  1044942  1047527  +  2586  MMPL domain-containing protein  YP_001306264  decreased coverage  0.00165976  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_1040  CDS  NC_009616  1069834  1070109  +  276  stage V sporulation protein S  YP_001306286  decreased coverage  0.00126315  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_1041  CDS  NC_009616  1070117  1070350  +  234  hypothetical protein  YP_001306287  decreased coverage  0.00305164  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_1057  CDS  NC_009616  1085683  1086243  -  561  hypothetical protein  YP_001306302  decreased coverage  0.00111473  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_1202  CDS  NC_009616  1219504  1219749  +  246  hypothetical protein  YP_001306441  decreased coverage  0.000986142  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_1316  CDS  NC_009616  1323074  1325200  -  2127  (p)ppGpp synthetase I, SpoT/RelA  YP_001306550  decreased coverage  0.00230975  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_1317  CDS  NC_009616  1325318  1326637  +  1320  hypothetical protein  YP_001306551  decreased coverage  0.0006714  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_1388  CDS  NC_009616  1391497  1393125  +  1629  binding-protein-dependent transport systems inner membrane component  YP_001306620  decreased coverage  0.0000497228  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_1412  CDS  NC_009616  1413685  1414719  -  1035  transcription elongation factor NusA  YP_001306644  decreased coverage  0.00000474551  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_1413  CDS  NC_009616  1414732  1415175  -  444  hypothetical protein  YP_001306645  decreased coverage  0.000000509228  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_1414  CDS  NC_009616  1415419  1415688  +  270  protein of unknown function DUF861, cupin_3  YP_001306646  decreased coverage  0.00000022631  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_1415  CDS  NC_009616  1415711  1416334  +  624  formiminotransferase-cyclodeaminase  YP_001306647  decreased coverage  0.00000124599  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_1543  CDS  NC_009616  1532291  1535581  +  3291  permease YjgP/YjgQ family protein  YP_001306773  decreased coverage  0.00918394  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_1576  CDS  NC_009616  1562719  1563987  +  1269  citrate transporter  YP_001306805  decreased coverage  0.0000162894  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_1737  CDS  NC_009616  1727514  1727954  -  441  hypothetical protein  YP_001306961  decreased coverage  0.000000351718  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_1738  CDS  NC_009616  1727954  1728322  -  369  glycine cleavage system protein H  YP_001306962  decreased coverage  0.000000301495  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_1860  CDS  NC_009616  1845359  1847038  -  1680  methylmalonyl-CoA mutase, large subunit  YP_001307079  decreased coverage  0.0000937746  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_1868  CDS  NC_009616  1853349  1854113  -  765  beta-lactamase domain-containing protein  YP_001307087  decreased coverage  0.000140017  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_1869  CDS  NC_009616  1854282  1854911  +  630  hypothetical protein  YP_001307088  decreased coverage  0.000517299  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_1921  CDS  NC_009616  1907386  1908024  -  639  hypothetical protein  YP_001307138  decreased coverage  0.00117404  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_1922  CDS  NC_009616  1908074  1909267  -  1194  phosphate transporter  YP_001307139  decreased coverage  0.00186941  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
-
 
Tmel_1923  CDS  NC_009616  1909285  1909956  -  672  hypothetical protein  YP_001307140  decreased coverage  0.00116502  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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Tmel_R0060  tRNA  NC_009616  1415230  1415320  -  91  tRNA-Ser    decreased coverage  0.000000115188  n/a    Thermosipho melanesiensis BI429  Bacteria 
 
 
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