60 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Smal_0028  CDS  NC_011071  34147  35175  -  1029  Alcohol dehydrogenase GroES domain protein  YP_002026416  normal  0.0233433  decreased coverage  0.000000000133046  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_0096  CDS  NC_011071  118628  119263  +  636  hypothetical protein  YP_002026484  normal  0.059299  decreased coverage  0.00703459  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_0097  CDS  NC_011071  119856  121340  -  1485  AAA ATPase central domain protein  YP_002026485  normal  0.0174447  decreased coverage  0.00506367  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_0301  CDS  NC_011071  364491  366206  -  1716  peptidase M28  YP_002026689  normal  0.613732  decreased coverage  0.00132855  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_0302  CDS  NC_011071  366293  366955  -  663  hypothetical protein  YP_002026690  normal  1  decreased coverage  0.000813107  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_0303  CDS  NC_011071  367051  368349  +  1299  Peptidase M23  YP_002026691  normal  1  decreased coverage  0.00113075  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_0304  CDS  NC_011071  368458  369954  +  1497  carboxyl-terminal protease  YP_002026692  normal  1  decreased coverage  0.000604667  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_0305  CDS  NC_011071  370064  370756  -  693  Rhomboid family protein  YP_002026693  normal  1  decreased coverage  0.000904763  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_0403  CDS  NC_011071  480116  481300  +  1185  major facilitator superfamily MFS_1  YP_002026791  decreased coverage  0.00475007  normal  0.145448  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_0465  CDS  NC_011071  544192  544884  +  693  dithiobiotin synthetase  YP_002026853  decreased coverage  0.000000224118  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_0466  CDS  NC_011071  544961  546403  -  1443  transcriptional regulator, GntR family with aminotransferase domain  YP_002026854  decreased coverage  0.0000000195201  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_0507  CDS  NC_011071  596071  597909  +  1839  glucosamine--fructose-6-phosphate aminotransferase  YP_002026895  normal  1  decreased coverage  0.00435471  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_0741  CDS  NC_011071  865727  866743  +  1017  peptidase T2 asparaginase 2  YP_002027129  decreased coverage  0.00000000125091  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_0755  CDS  NC_011071  886244  886555  +  312  30S ribosomal protein S10  YP_002027143  decreased coverage  0.00000000000508535  normal  0.0162488  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_0761  CDS  NC_011071  889258  889593  +  336  50S ribosomal protein L22  YP_002027149  hitchhiker  0.000305048  decreased coverage  0.00987219  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_0785  CDS  NC_011071  905925  907112  +  1188  MscS Mechanosensitive ion channel  YP_002027173  decreased coverage  0.0017606  normal  0.0299135  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_0792  CDS  NC_011071  914433  916313  +  1881  propionyl-CoA synthetase  YP_002027180  decreased coverage  0.00519205  normal  0.139333  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_0793  CDS  NC_011071  916536  917051  +  516  hypothetical protein  YP_002027181  decreased coverage  0.00522604  normal  0.142472  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_1016  CDS  NC_011071  1155388  1156386  -  999  Polyprenyl synthetase  YP_002027404  decreased coverage  0.00162211  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_1035  CDS  NC_011071  1186284  1188122  +  1839  protein of unknown function DUF195  YP_002027423  decreased coverage  0.0000597215  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_1208  CDS  NC_011071  1372498  1374075  +  1578  peptidase M28  YP_002027596  normal  0.382894  decreased coverage  0.00811068  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_1210  CDS  NC_011071  1375667  1376158  +  492  ferric uptake regulator, Fur family  YP_002027598  normal  0.427545  decreased coverage  0.00910774  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_1376  CDS  NC_011071  1563754  1566999  +  3246  TonB-dependent outer membrane receptor  YP_002027764  decreased coverage  0.00784128  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_1444  CDS  NC_011071  1629936  1631432  -  1497  peptidase S10 serine carboxypeptidase  YP_002027832  decreased coverage  0.00886012  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_1514  CDS  NC_011071  1709722  1711146  +  1425  sugar transporter  YP_002027902  decreased coverage  0.00665244  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_1617  CDS  NC_011071  1817717  1819573  +  1857  preprotein translocase subunit SecD  YP_002028005  decreased coverage  0.00434823  normal  0.598494  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_1812  CDS  NC_011071  2031275  2034517  +  3243  carbamoyl phosphate synthase large subunit  YP_002028199  decreased coverage  0.00557421  normal  0.0258544  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_1813  CDS  NC_011071  2034514  2034990  +  477  transcription elongation factor GreA  YP_002028200  decreased coverage  0.00359574  normal  0.0174151  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_2095  CDS  NC_011071  2352816  2353886  +  1071  NUDIX hydrolase  YP_002028482  normal  0.390831  decreased coverage  0.00754361  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_2171  CDS  NC_011071  2434010  2435257  -  1248  outer membrane efflux protein  YP_002028558  decreased coverage  0.00952498  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_2295  CDS  NC_011071  2575268  2576308  -  1041  ribonucleotide-diphosphate reductase subunit beta  YP_002028681  decreased coverage  0.00345425  normal  0.110035  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_2296  CDS  NC_011071  2576417  2578780  -  2364  ribonucleotide-diphosphate reductase subunit alpha  YP_002028682  decreased coverage  0.00177695  normal  0.152718  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_2308  CDS  NC_011071  2593295  2595376  +  2082  TonB-dependent siderophore receptor  YP_002028694  decreased coverage  0.00270239  normal  0.034674  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_2372  CDS  NC_011071  2669731  2670165  +  435  Glyoxalase/bleomycin resistance protein/dioxygenase  YP_002028758  decreased coverage  0.000210316  normal  0.546441  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_2499  CDS  NC_011071  2805871  2806341  -  471  hypothetical protein  YP_002028883  decreased coverage  0.00374964  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_2542  CDS  NC_011071  2836888  2837163  +  276  polyhydroxyalkanoic acid system protein  YP_002028925  decreased coverage  0.00484477  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_2543  CDS  NC_011071  2837244  2837735  +  492  poly(hydroxyalkanoate) granule-associated protein  YP_002028926  decreased coverage  0.00882865  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_2713  CDS  NC_011071  3026840  3027994  +  1155  cytochrome d ubiquinol oxidase, subunit II  YP_002029096  decreased coverage  0.000000185666  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_2714  CDS  NC_011071  3028049  3028165  +  117  cyd operon protein YbgT  YP_002029097  decreased coverage  0.000000024907  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_2824  CDS  NC_011071  3139900  3140994  -  1095  NADH dehydrogenase subunit H  YP_002029207  decreased coverage  0.00869776  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_2942  CDS  NC_011071  3279529  3280107  -  579  RNA polymerase, sigma-24 subunit, ECF subfamily  YP_002029324  decreased coverage  0.00874185  normal  0.936687  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_2964  CDS  NC_011071  3302973  3304241  -  1269  monooxygenase FAD-binding  YP_002029346  normal  1  decreased coverage  0.00000808449  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_2975  CDS  NC_011071  3312875  3313555  -  681  ribonuclease III  YP_002029357  decreased coverage  0.00170504  hitchhiker  0.00754361  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_2996  CDS  NC_011071  3337967  3339931  +  1965  Peptidyl-dipeptidase A  YP_002029378  decreased coverage  0.000459005  normal  0.0414122  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_3007  CDS  NC_011071  3350611  3352734  -  2124  methyl-accepting chemotaxis sensory transducer  YP_002029389  normal  1  decreased coverage  0.00177393  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_3008  CDS  NC_011071  3352952  3354301  +  1350  ATPase associated with various cellular activities AAA_5  YP_002029390  normal  1  decreased coverage  0.00506367  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_3009  CDS  NC_011071  3354288  3355670  +  1383  hypothetical protein  YP_002029391  normal  0.329981  decreased coverage  0.0051675  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_3061  CDS  NC_011071  3417680  3420637  -  2958  TonB-dependent receptor plug  YP_002029443  decreased coverage  0.00588952  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_3430  CDS  NC_011071  3859328  3860065  +  738  pteridine reductase  YP_002029812  normal  0.425485  decreased coverage  0.00917749  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_3431  CDS  NC_011071  3860146  3860667  -  522  2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase  YP_002029813  normal  0.345275  decreased coverage  0.00904958  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_3575  CDS  NC_011071  4027541  4028674  +  1134  GTP cyclohydrolase  YP_002029957  decreased coverage  0.00738841  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_R0015  tRNA  NC_011071  866880  866965  +  86  tRNA-Tyr    decreased coverage  0.00000000000666826  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_R0016  tRNA  NC_011071  866990  867063  +  74  tRNA-Gly    decreased coverage  0.0000000000070019  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_R0047  tRNA  NC_011071  1663895  1663987  +  93  tRNA-Ser    decreased coverage  0.00947013  normal  0.245138  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_R0050  tRNA  NC_011071  1701743  1701819  -  77  tRNA-Arg    decreased coverage  0.0039275  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_R0056  tRNA  NC_011071  2701032  2701107  +  76  tRNA-Ala    decreased coverage  0.00000000000771632  normal  0.557555  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_R0057  tRNA  NC_011071  2701157  2701232  +  76  tRNA-Glu    decreased coverage  0.00000000000756674  normal  0.548722  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_R0058  tRNA  NC_011071  2701276  2701351  +  76  tRNA-Ala    decreased coverage  0.00000000000693286  normal  0.541415  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_R0062  tRNA  NC_011071  3028221  3028297  +  77  tRNA-Pro    decreased coverage  0.00000001951  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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Smal_R0063  tRNA  NC_011071  3028438  3028514  +  77  tRNA-Pro    decreased coverage  0.0000000171942  normal  1  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
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