62 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Fnod_0010  CDS  NC_009718  9745  10020  +  276  histone family protein DNA-binding protein  YP_001409540  decreased coverage  0.000000000649518  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0156  CDS  NC_009718  157447  158145  +  699  phosphate uptake regulator, PhoU  YP_001409680  decreased coverage  0.000017852  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0168  CDS  NC_009718  172334  172693  -  360  RNA-binding S1 domain-containing protein  YP_001409692  decreased coverage  0.00000000107676  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0169  CDS  NC_009718  172743  172955  -  213  50S ribosomal protein L31  YP_001409693  decreased coverage  0.00000000457438  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0180  CDS  NC_009718  182580  183722  -  1143  membrane protein  YP_001409704  decreased coverage  0.00000462081  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0198  CDS  NC_009718  203241  203963  +  723  HisJ family histidinol phosphate phosphatase  YP_001409722  decreased coverage  0.0000000574159  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0199  CDS  NC_009718  203998  204591  +  594  elongation factor Ts  YP_001409723  decreased coverage  0.00000000300429  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0228  CDS  NC_009718  235940  236941  +  1002  glycosyl transferase family protein  YP_001409752  decreased coverage  0.0000082788  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0257  CDS  NC_009718  267698  268588  -  891  periplasmic binding protein  YP_001409780  decreased coverage  0.0000185774  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0258  CDS  NC_009718  268920  269228  -  309  hypothetical protein  YP_001409781  decreased coverage  0.00000383163  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0259  CDS  NC_009718  269285  271171  -  1887  ferrous iron transport protein B  YP_001409782  decreased coverage  0.00038951  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0310  CDS  NC_009718  336277  338502  +  2226  ATPase  YP_001409832  decreased coverage  0.0000412877  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0339  CDS  NC_009718  366386  367576  -  1191  beta-lactamase domain-containing protein  YP_001409861  decreased coverage  0.000206565  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0398  CDS  NC_009718  434252  435121  +  870  riboflavin biosynthesis protein RibF  YP_001409920  decreased coverage  0.00802813  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0452  CDS  NC_009718  490577  491683  +  1107  ROK family protein  YP_001409974  decreased coverage  0.00127145  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0453  CDS  NC_009718  491696  492301  +  606  uridine kinase  YP_001409975  decreased coverage  0.00211906  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0454  CDS  NC_009718  492376  493668  +  1293  (dimethylallyl)adenosine tRNA methylthiotransferase  YP_001409976  decreased coverage  0.000369122  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0492  CDS  NC_009718  531115  532320  -  1206  phosphate transporter  YP_001410013  decreased coverage  0.0000002295  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0493  CDS  NC_009718  532335  533009  -  675  hypothetical protein  YP_001410014  decreased coverage  0.000000213235  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0531  CDS  NC_009718  586288  587448  -  1161  extracellular ligand-binding receptor  YP_001410051  decreased coverage  0.0000000267349  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0532  CDS  NC_009718  587498  588796  -  1299  acetyl-CoA hydrolase  YP_001410052  decreased coverage  0.000000818274  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0541  CDS  NC_009718  597946  598323  -  378  regulatory protein GntR HTH  YP_001410061  decreased coverage  0.0000000336324  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0542  CDS  NC_009718  598320  599270  -  951  hypothetical protein  YP_001410062  decreased coverage  0.000000369435  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0543  CDS  NC_009718  599492  601072  -  1581  phytoene dehydrogenase and related protein-like protein  YP_001410063  decreased coverage  0.00000116233  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0611  CDS  NC_009718  679087  679986  -  900  malonyl CoA-acyl carrier protein transacylase  YP_001410123  decreased coverage  0.0000000665754  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0612  CDS  NC_009718  680010  680981  -  972  2-nitropropane dioxygenase NPD  YP_001410124  decreased coverage  0.000000694328  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0613  CDS  NC_009718  680978  681406  -  429  Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ  YP_001410125  decreased coverage  0.0000000688375  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0687  CDS  NC_009718  752595  753836  +  1242  hypothetical protein  YP_001410199  decreased coverage  0.00000767082  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0762  CDS  NC_009718  835494  837050  +  1557  chloride channel core  YP_001410272  decreased coverage  0.0000775923  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0763  CDS  NC_009718  837104  838273  -  1170  thiamine biosynthesis protein ThiI  YP_001410273  decreased coverage  0.00421556  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0771  CDS  NC_009718  845831  846127  -  297  regulatory protein ArsR  YP_001410281  decreased coverage  0.00625866  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
-
 
Fnod_0901  CDS  NC_009718  975486  976607  -  1122  queuine tRNA-ribosyltransferase  YP_001410410  decreased coverage  0.000000294135  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0907  CDS  NC_009718  983337  984269  +  933  methionyl-tRNA formyltransferase  YP_001410414  decreased coverage  0.0000822843  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1020  CDS  NC_009718  1117610  1117972  +  363  glycine cleavage system protein H  YP_001410527  decreased coverage  0.00000000891205  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
-
 
Fnod_1062  CDS  NC_009718  1155446  1157578  -  2133  peptidase S8/S53 subtilisin kexin sedolisin  YP_001410567  decreased coverage  0.00000196875  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
-
 
Fnod_1078  CDS  NC_009718  1178089  1179039  -  951  ISCpe7, transposase  YP_001410583  decreased coverage  0.0000000101857  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1098  CDS  NC_009718  1196903  1197886  +  984  hypothetical protein  YP_001410603  decreased coverage  0.0000000190359  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
-
 
Fnod_1111  CDS  NC_009718  1210110  1210739  -  630  30S ribosomal protein S4  YP_001410615  decreased coverage  0.0000000499385  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1112  CDS  NC_009718  1210841  1211233  -  393  30S ribosomal protein S11  YP_001410616  decreased coverage  0.0000000169024  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1253  CDS  NC_009718  1353706  1354944  +  1239  hydroxypyruvate reductase  YP_001410757  decreased coverage  0.000000356699  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1260  CDS  NC_009718  1360485  1361894  +  1410  FeS assembly protein SufB  YP_001410764  decreased coverage  0.0000000785433  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1261  CDS  NC_009718  1362119  1363069  -  951  ISCpe7, transposase  YP_001410765  decreased coverage  0.0000000118886  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1262  CDS  NC_009718  1363194  1363379  +  186  hypothetical protein  YP_001410766  decreased coverage  0.000000000395651  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
-
 
Fnod_1263  CDS  NC_009718  1363376  1363576  +  201  hypothetical protein  YP_001410767  decreased coverage  0.000000000415596  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
-
 
Fnod_1264  CDS  NC_009718  1363638  1364441  -  804  hypothetical protein  YP_001410768  decreased coverage  0.00000000472011  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1293  CDS  NC_009718  1394510  1396063  +  1554  phosphodiesterase  YP_001410797  decreased coverage  0.000703284  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1380  CDS  NC_009718  1488008  1488865  +  858  hypothetical protein  YP_001410884  decreased coverage  0.000000107649  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1435  CDS  NC_009718  1554763  1556799  -  2037  methyl-accepting chemotaxis sensory transducer  YP_001410936  decreased coverage  0.00000167242  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1458  CDS  NC_009718  1582024  1583007  -  984  hypothetical protein  YP_001410958  decreased coverage  0.00543246  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1459  CDS  NC_009718  1583054  1583818  -  765  hypothetical protein  YP_001410959  decreased coverage  0.000468004  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1526  CDS  NC_009718  1656838  1657422  +  585  RdgB/HAM1 family non-canonical purine NTP pyrophosphatase  YP_001411026  decreased coverage  0.0000000178708  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
-
 
Fnod_1527  CDS  NC_009718  1657462  1658655  +  1194  imidazolonepropionase  YP_001411027  decreased coverage  0.000000197969  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1558  CDS  NC_009718  1696151  1697554  +  1404  glycoside hydrolase family protein  YP_001411058  decreased coverage  0.0000340299  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1559  CDS  NC_009718  1697586  1698587  +  1002  alanine racemase  YP_001411059  decreased coverage  0.0000066632  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1564  CDS  NC_009718  1704070  1705806  -  1737  extracellular solute-binding protein  YP_001411064  decreased coverage  0.00697686  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1565  CDS  NC_009718  1705809  1706816  -  1008  oligopeptide/dipeptide ABC transporter, ATPase subunit  YP_001411065  decreased coverage  0.0000744963  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1587  CDS  NC_009718  1732119  1733120  +  1002  regulatory protein LacI  YP_001411087  decreased coverage  0.000000010083  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1716  CDS  NC_009718  1870102  1870392  +  291  flagellar hook-basal body complex subunit FliE  YP_001411208  decreased coverage  0.000000000289402  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1717  CDS  NC_009718  1870484  1871431  -  948  hypothetical protein  YP_001411209  decreased coverage  0.00000000692892  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1761  CDS  NC_009718  1916469  1917416  +  948  hypothetical protein  YP_001411251  decreased coverage  0.0000000911876  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_R0041  tRNA  NC_009718  1136879  1136954  -  76  tRNA-Phe    decreased coverage  0.000000184643  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_R0043  tRNA  NC_009718  1137124  1137199  -  76  tRNA-Glu    decreased coverage  0.000000194529  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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