78 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
HY04AAS1_0005  CDS  NC_011126  4258  5445  +  1188  dihydropteroate synthase  YP_002120675  decreased coverage  0.00021463  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0016  CDS  NC_011126  16463  17401  +  939  ribose-phosphate pyrophosphokinase  YP_002120686  decreased coverage  0.000100275  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0061  CDS  NC_011126  57534  59111  -  1578  RNA binding S1 domain protein  YP_002120731  decreased coverage  0.00000665212  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0062  CDS  NC_011126  59219  59377  -  159  hypothetical protein  YP_002120732  decreased coverage  0.000000000251038  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0084  CDS  NC_011126  77396  78196  +  801  hypothetical protein  YP_002120754  decreased coverage  0.00000000000752991  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0127  CDS  NC_011126  113775  114533  -  759  protein of unknown function DUF81  YP_002120797  decreased coverage  0.000000000037107  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0141  CDS  NC_011126  126128  126970  +  843  diguanylate phosphodiesterase  YP_002120811  decreased coverage  0.00000000000294974  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0142  CDS  NC_011126  127113  127388  +  276  30S ribosomal protein S15  YP_002120812  decreased coverage  0.0000000000000446428  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0143  CDS  NC_011126  127391  129502  +  2112  polynucleotide phosphorylase/polyadenylase  YP_002120813  decreased coverage  0.0000000102458  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0151  CDS  NC_011126  135416  136501  -  1086  cell division protein FtsZ  YP_002120821  decreased coverage  0.0000000000169065  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0232  CDS  NC_011126  209043  209558  +  516  protein of unknown function DUF177  YP_002120902  decreased coverage  0.00000000000764043  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0233  CDS  NC_011126  209539  209721  +  183  50S ribosomal protein L32  YP_002120903  decreased coverage  0.0000000000000487517  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0234  CDS  NC_011126  209733  210752  +  1020  putative glycerol-3-phosphate acyltransferase PlsX  YP_002120904  decreased coverage  0.0000000000235642  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0259  CDS  NC_011126  231585  236276  +  4692  DNA-directed RNA polymerase, beta' subunit  YP_002120927  decreased coverage  0.000323762  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0264  CDS  NC_011126  240565  240879  +  315  30S ribosomal protein S10  YP_002120932  decreased coverage  0.000000005821  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0298  CDS  NC_011126  257660  257899  +  240  hypothetical protein  YP_002120966  decreased coverage  0.000000000000067955  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0309  CDS  NC_011126  269061  269960  +  900  Polysulphide reductase NrfD  YP_002120977  decreased coverage  0.00000000856639  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0313  CDS  NC_011126  273500  274255  -  756  RNA methyltransferase, TrmH family, group 3  YP_002120981  decreased coverage  0.000179001  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0314  CDS  NC_011126  274249  274980  -  732  3-deoxy-manno-octulosonate cytidylyltransferase  YP_002120982  decreased coverage  0.00000631041  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0343  CDS  NC_011126  302467  303213  +  747  uroporphyrin-III C-methyltransferase  YP_002121011  decreased coverage  0.00230836  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0388  CDS  NC_011126  341318  342337  -  1020  Radical SAM domain protein  YP_002121056  decreased coverage  0.00103201  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0393  CDS  NC_011126  345173  346366  -  1194  Radical SAM domain protein  YP_002121061  decreased coverage  0.00226682  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0416  CDS  NC_011126  360924  361532  +  609  hypothetical protein  YP_002121084  decreased coverage  0.00000000000116857  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0449  CDS  NC_011126  392398  392619  -  222  30S ribosomal protein S18  YP_002121117  decreased coverage  0.000000000000993889  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0519  CDS  NC_011126  457413  458687  +  1275  3-isopropylmalate dehydratase large subunit  YP_002121184  decreased coverage  0.000000192959  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0525  CDS  NC_011126  462382  463752  +  1371  FAD linked oxidase domain protein  YP_002121190  decreased coverage  0.00145948  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0530  CDS  NC_011126  468289  468600  -  312  hypothetical protein  YP_002121195  decreased coverage  0.0000000000136385  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0531  CDS  NC_011126  468584  469345  -  762  hypothetical protein  YP_002121196  decreased coverage  0.0000000000172431  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0552  CDS  NC_011126  487996  488931  -  936  DNA replication protein DnaC  YP_002121217  decreased coverage  0.000116033  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0572  CDS  NC_011126  510183  513284  -  3102  acriflavin resistance protein  YP_002121237  decreased coverage  0.000015454  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0574  CDS  NC_011126  514447  515730  -  1284  outer membrane efflux protein  YP_002121239  decreased coverage  0.00000581742  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0591  CDS  NC_011126  527062  528090  -  1029  flagellar P-ring protein  YP_002121256  decreased coverage  0.000000000860918  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0592  CDS  NC_011126  528148  529263  -  1116  Radical SAM domain protein  YP_002121257  decreased coverage  0.000000649486  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0633  CDS  NC_011126  565972  566706  +  735  MotA/TolQ/ExbB proton channel  YP_002121298  decreased coverage  0.00732612  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0666  CDS  NC_011126  594280  595110  -  831  polyferredoxin-like protein  YP_002121331  decreased coverage  0.00000201156  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0667  CDS  NC_011126  595205  595603  -  399  hypothetical protein  YP_002121332  decreased coverage  0.000000134127  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0689  CDS  NC_011126  620712  622466  -  1755  hypothetical protein  YP_002121354  decreased coverage  0.000000917929  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0705  CDS  NC_011126  640329  642728  +  2400  TonB-dependent receptor  YP_002121370  decreased coverage  0.000765865  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0753  CDS  NC_011126  683711  685612  +  1902  proton-translocating NADH-quinone oxidoreductase, chain L  YP_002121418  decreased coverage  0.0000430257  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0754  CDS  NC_011126  685613  687118  +  1506  proton-translocating NADH-quinone oxidoreductase, chain M  YP_002121419  decreased coverage  0.000228157  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0759  CDS  NC_011126  691743  692369  +  627  4Fe-4S ferredoxin iron-sulfur binding domain protein  YP_002121424  decreased coverage  0.00000000207287  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0763  CDS  NC_011126  695042  696520  +  1479  proton-translocating NADH-quinone oxidoreductase, chain M  YP_002121428  decreased coverage  0.0000188631  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0768  CDS  NC_011126  699984  701339  +  1356  beta-lactamase domain protein  YP_002121433  decreased coverage  0.000108746  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0770  CDS  NC_011126  701425  702564  +  1140  hypothetical protein  YP_002121435  decreased coverage  0.00310249  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0808  CDS  NC_011126  749694  749993  -  300  histone family protein DNA-binding protein  YP_002121473  decreased coverage  0.00246675  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0847  CDS  NC_011126  798019  798639  +  621  riboflavin synthase subunit alpha  YP_002121512  decreased coverage  0.00000000000849301  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0848  CDS  NC_011126  798647  799261  +  615  transcriptional regulator, TetR family  YP_002121513  decreased coverage  0.000000000000568716  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0859  CDS  NC_011126  809112  809402  +  291  chaperonin Cpn10  YP_002121524  decreased coverage  0.0000000000206391  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0860  CDS  NC_011126  809435  811066  +  1632  chaperonin GroEL  YP_002121525  decreased coverage  0.0000000123725  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0910  CDS  NC_011126  857729  858784  +  1056  loricrin  YP_002121575  decreased coverage  0.0000184739  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0985  CDS  NC_011126  922182  923687  +  1506  drug resistance transporter, EmrB/QacA subfamily  YP_002121649  decreased coverage  0.000000000298388  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0992  CDS  NC_011126  930279  930866  +  588  protein of unknown function DUF88  YP_002121656  decreased coverage  0.0000000104741  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1012  CDS  NC_011126  946277  948841  -  2565  translation initiation factor IF-2  YP_002121676  decreased coverage  0.000000897592  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1017  CDS  NC_011126  951958  952386  -  429  H+transporting two-sector ATPase B/B' subunit  YP_002121681  decreased coverage  0.00000143879  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1019  CDS  NC_011126  952957  955041  +  2085  ribonuclease R  YP_002121683  decreased coverage  0.000000144778  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1047  CDS  NC_011126  977869  979032  -  1164  C4-dicarboxylate transporter/malic acid transport protein  YP_002121711  decreased coverage  0.000000000418188  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1056  CDS  NC_011126  985463  987262  -  1800  leucyl-tRNA synthetase  YP_002121720  decreased coverage  0.00000000373347  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1067  CDS  NC_011126  995503  996453  -  951  glycosyl transferase family 9  YP_002121731  decreased coverage  0.00000000000716573  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1068  CDS  NC_011126  996464  996892  -  429  hypothetical protein  YP_002121732  decreased coverage  0.000000000000227849  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1103  CDS  NC_011126  1021245  1022606  -  1362  thiamine biosynthesis protein ThiC  YP_002121767  decreased coverage  0.000141621  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1187  CDS  NC_011126  1097907  1098497  -  591  protein of unknown function DUF205  YP_002121850  decreased coverage  0.000281015  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1188  CDS  NC_011126  1098499  1099089  -  591  phospholipase D/Transphosphatidylase  YP_002121851  decreased coverage  0.00000000788745  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1189  CDS  NC_011126  1099086  1100339  -  1254  phosphoribosylamine/glycine ligase  YP_002121852  decreased coverage  0.0000704507  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1317  CDS  NC_011126  1224372  1225916  -  1545  protein of unknown function DUF1703  YP_002121980  decreased coverage  0.00550459  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1388  CDS  NC_011126  1299573  1302809  -  3237  acriflavin resistance protein  YP_002122051  decreased coverage  0.00288524  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1405  CDS  NC_011126  1319290  1322658  +  3369  diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  YP_002122068  decreased coverage  0.00000520478  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1432  CDS  NC_011126  1350125  1351390  +  1266  isocitrate/isopropylmalate dehydrogenase  YP_002122095  decreased coverage  0.000000000102242  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1441  CDS  NC_011126  1360945  1363410  +  2466  Polynucleotide adenylyltransferase region  YP_002122104  decreased coverage  0.000556215  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1444  CDS  NC_011126  1365993  1367921  +  1929  hypothetical protein  YP_002122107  decreased coverage  0.000091004  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1449  CDS  NC_011126  1371206  1371871  -  666  glutaredoxin-like domain protein  YP_002122111  decreased coverage  0.0000000103791  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1472  CDS  NC_011126  1390797  1391252  -  456  hypothetical protein  YP_002122134  decreased coverage  0.00198336  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1473  CDS  NC_011126  1391305  1392789  -  1485  hypothetical protein  YP_002122135  decreased coverage  0.00085768  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1509  CDS  NC_011126  1423206  1423394  -  189  zinc finger CDGSH-type domain protein  YP_002122170  decreased coverage  0.000000000000655444  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1536  CDS  NC_011126  1451996  1454566  -  2571  alanyl-tRNA synthetase  YP_002122197  decreased coverage  0.00000027092  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1612  CDS  NC_011126  1529552  1533157  +  3606  DNA polymerase III, alpha subunit  YP_002122271  decreased coverage  0.00506055  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1631  CDS  NC_011126  1550560  1551567  +  1008  Alcohol dehydrogenase GroES domain protein  YP_002122290  decreased coverage  0.00000000205329  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_R0009  tRNA  NC_011126  127010  127083  +  74  tRNA-Arg    decreased coverage  0.0000000000000152408  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_R0012  tRNA  NC_011126  203060  203132  +  73  tRNA-Arg    decreased coverage  0.0000000000000202424  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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