56 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Amuc_0057  CDS  NC_010655  76349  76885  +  537  UvrB/UvrC protein  YP_001876684  decreased coverage  0.00323429  normal  0.240627  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_0058  CDS  NC_010655  76891  77946  +  1056  ATP:guanido phosphotransferase  YP_001876685  decreased coverage  0.00335671  normal  0.178856  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_0270  CDS  NC_010655  332656  333210  +  555  Shikimate kinase  YP_001876894  decreased coverage  0.000000287272  normal  0.701055  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_0280  CDS  NC_010655  339969  340853  -  885  ribonuclease HIII  YP_001876903  decreased coverage  0.00000720364  normal  1  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_0282  CDS  NC_010655  341610  342113  +  504  hypothetical protein  YP_001876905  decreased coverage  0.00000254697  normal  1  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_0307  CDS  NC_010655  363308  363781  -  474  30S ribosomal protein S7  YP_001876930  decreased coverage  0.000000218135  normal  1  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_0326  CDS  NC_010655  383783  384898  -  1116  hypothetical protein  YP_001876947  normal  0.0150032  decreased coverage  0.000000638047  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_0327  CDS  NC_010655  384905  385492  -  588  hypothetical protein  YP_001876948  decreased coverage  0.00725297  decreased coverage  0.000000320851  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_0328  CDS  NC_010655  385486  387501  -  2016  hypothetical protein  YP_001876949  decreased coverage  0.00012649  hitchhiker  0.00000371301  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_0386  CDS  NC_010655  462976  464607  -  1632  hypothetical protein  YP_001877006  decreased coverage  0.00110205  normal  1  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_0436  CDS  NC_010655  520258  521025  -  768  HAD-superfamily subfamily IB hydrolase, TIGR01490  YP_001877055  decreased coverage  0.000000408173  normal  1  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_0545  CDS  NC_010655  646473  647093  -  621  hypothetical protein  YP_001877164  decreased coverage  0.000789801  normal  0.125212  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_0717  CDS  NC_010655  845810  847114  -  1305  amino acid permease-associated region  YP_001877335  decreased coverage  0.00000167398  normal  1  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_0718  CDS  NC_010655  847267  847932  +  666  HAD-superfamily hydrolase, subfamily IA, variant 1  YP_001877336  decreased coverage  0.00000286264  normal  1  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_0824  CDS  NC_010655  969353  973147  +  3795  glycoside hydrolase family 2 TIM barrel  YP_001877438  unclonable  0.0000954733  decreased coverage  0.00757756  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_0889  CDS  NC_010655  1058478  1059632  +  1155  efflux transporter, RND family, MFP subunit  YP_001877503  decreased coverage  0.000000756331  normal  1  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_0925  CDS  NC_010655  1106907  1107134  +  228  KOW domain protein  YP_001877538  decreased coverage  0.000000600412  normal  1  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_0926  CDS  NC_010655  1107201  1107782  +  582  ribosomal protein L5  YP_001877539  decreased coverage  0.00000208834  normal  1  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_0970  CDS  NC_010655  1157874  1160171  +  2298  SSS sodium solute transporter superfamily  YP_001877583  decreased coverage  0.000363528  normal  0.258421  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1046  CDS  NC_010655  1248961  1249530  -  570  NusG antitermination factor  YP_001877653  decreased coverage  0.000000149181  normal  1  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1047  CDS  NC_010655  1249560  1249787  -  228  preprotein translocase, SecE subunit  YP_001877654  decreased coverage  0.0000000568369  normal  1  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1085  CDS  NC_010655  1296592  1297809  +  1218  Carbohydrate-selective porin OprB  YP_001877692  unclonable  0.000000116954  decreased coverage  8.02155e-19  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1095  CDS  NC_010655  1306359  1308284  +  1926  heavy metal translocating P-type ATPase  YP_001877702  decreased coverage  0.0000123465  hitchhiker  0.000000122053  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1096  CDS  NC_010655  1308450  1309874  -  1425  transcription termination factor Rho  YP_001877703  decreased coverage  0.00000220234  hitchhiker  0.0000128314  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1147  CDS  NC_010655  1375379  1376257  +  879  hypothetical protein  YP_001877754  normal  0.409203  decreased coverage  0.0000175606  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1148  CDS  NC_010655  1376515  1376718  +  204  hypothetical protein  YP_001877755  normal  0.380994  decreased coverage  0.00000995372  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1189  CDS  NC_010655  1425427  1425690  -  264  50S ribosomal protein L28  YP_001877795  decreased coverage  0.0000000438944  normal  1  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1234  CDS  NC_010655  1483238  1483666  +  429  ribosomal protein L13  YP_001877840  decreased coverage  0.00635155  normal  0.252185  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1352  CDS  NC_010655  1625276  1626028  +  753  hypothetical protein  YP_001877957  decreased coverage  0.000463404  hitchhiker  0.00000000262795  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1396  CDS  NC_010655  1667480  1669273  -  1794  aspartyl-tRNA synthetase  YP_001878001  decreased coverage  0.000259545  normal  1  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1411  CDS  NC_010655  1688582  1689256  +  675  hypothetical protein  YP_001878015  decreased coverage  0.0000237297  normal  0.940904  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1516  CDS  NC_010655  1810066  1811703  -  1638  putative PAS/PAC sensor protein  YP_001878118  hitchhiker  0.00955123  decreased coverage  0.00000000236227  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1517  CDS  NC_010655  1811834  1812520  -  687  RNA polymerase, sigma-24 subunit, ECF subfamily  YP_001878119  hitchhiker  0.000360016  decreased coverage  0.000000000680487  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1519  CDS  NC_010655  1814271  1817507  +  3237  helicase domain protein  YP_001878121  decreased coverage  0.00298818  hitchhiker  0.00000196773  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1520  CDS  NC_010655  1817510  1818112  +  603  hypothetical protein  YP_001878122  decreased coverage  0.00000378207  hitchhiker  0.00000806607  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1686  CDS  NC_010655  2048214  2050556  +  2343  Beta-galactosidase  YP_001878285  decreased coverage  0.00233252  normal  0.321684  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1794  CDS  NC_010655  2181989  2182795  -  807  peptidase S24 and S26 domain protein  YP_001878393  normal  0.854647  decreased coverage  0.00408927  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1795  CDS  NC_010655  2182897  2183223  +  327  hypothetical protein  YP_001878394  normal  0.352874  decreased coverage  0.00302013  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1797  CDS  NC_010655  2184205  2185077  +  873  hypothetical protein  YP_001878396  normal  0.227958  decreased coverage  0.00253593  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1798  CDS  NC_010655  2185074  2186279  +  1206  aminotransferase class I and II  YP_001878397  normal  0.231865  decreased coverage  0.00490187  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1829  CDS  NC_010655  2222637  2223452  -  816  class II aldolase/adducin family protein  YP_001878428  decreased coverage  0.00738652  normal  1  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1917  CDS  NC_010655  2327545  2328507  +  963  PfkB domain protein  YP_001878511  normal  1  decreased coverage  0.000761128  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1918  CDS  NC_010655  2328690  2330006  -  1317  bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase  YP_001878512  normal  1  decreased coverage  0.000565023  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_1921  CDS  NC_010655  2331792  2333681  -  1890  apolipoprotein N-acyltransferase  YP_001878515  normal  1  decreased coverage  0.0008443  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1922  CDS  NC_010655  2333819  2334052  +  234  putative ferredoxin  YP_001878516  normal  0.871908  decreased coverage  0.000431531  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1924  CDS  NC_010655  2334650  2336644  +  1995  Beta-N-acetylhexosaminidase  YP_001878518  normal  0.234624  decreased coverage  0.00104389  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1925  CDS  NC_010655  2336696  2337652  -  957  hypothetical protein  YP_001878519  normal  0.401553  decreased coverage  0.000801317  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_1970  CDS  NC_010655  2389617  2393159  +  3543  ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent  YP_001878564  normal  0.23883  decreased coverage  0.000751585  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_2015  CDS  NC_010655  2447996  2448610  +  615  thiamine-phosphate pyrophosphorylase  YP_001878606  decreased coverage  0.0030252  normal  0.0171267  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_2034  CDS  NC_010655  2469820  2471343  +  1524  Methylmalonyl-CoA carboxytransferase  YP_001878625  hitchhiker  0.00118828  decreased coverage  0.000000727606  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
-
 
Amuc_2035  CDS  NC_010655  2471413  2472168  -  756  hypothetical protein  YP_001878626  hitchhiker  0.000129798  decreased coverage  0.000000370745  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_2036  CDS  NC_010655  2472372  2473766  -  1395  MATE efflux family protein  YP_001878627  hitchhiker  0.0000288761  decreased coverage  0.0000000485587  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_2155  CDS  NC_010655  2627640  2628326  +  687  hypothetical protein  YP_001878744  normal  0.541096  decreased coverage  0.00429622  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_2157  CDS  NC_010655  2629441  2630022  +  582  NADH dehydrogenase subunit B  YP_001878745  normal  1  decreased coverage  0.00451511  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_R0006  tRNA  NC_010655  96989  97074  +  86  tRNA-Leu    decreased coverage  0.0000000531495  normal  0.328026  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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Amuc_R0033  tRNA  NC_010655  1249821  1249896  -  76  tRNA-Trp    decreased coverage  0.0000000398886  normal  1  Akkermansia muciniphila ATCC BAA-835  Bacteria 
 
 
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