58 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Cag_0023  CDS  NC_007514  23776  24714  +  939  peptide chain release factor 2  YP_378345  decreased coverage  0.00000000581574  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0151  CDS  NC_007514  169072  169362  +  291  hypothetical protein  YP_378472  decreased coverage  0.000205386  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0160  CDS  NC_007514  180237  181553  +  1317  TPR repeat-containing protein  YP_378481  decreased coverage  0.00134878  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0213  CDS  NC_007514  242187  243137  +  951  WD-40 repeat-containing protein  YP_378534  decreased coverage  0.00000259833  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0241  CDS  NC_007514  272459  273520  +  1062  recombinase A  YP_378560  decreased coverage  0.00000000059491  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0300  CDS  NC_007514  329102  329512  +  411  hypothetical protein  YP_378619  decreased coverage  0.0000477116  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0329  CDS  NC_007514  367528  368487  +  960  GTPase EngC  YP_378645  decreased coverage  0.000000202541  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0340  CDS  NC_007514  382630  384141  -  1512  cell wall biosynthesis glycosyltransferase-like protein  YP_378656  decreased coverage  0.00114469  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0343  CDS  NC_007514  388095  390290  +  2196  photosystem P840 reaction center, large subunit  YP_378659  decreased coverage  0.00000249067  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0351  CDS  NC_007514  399687  399878  +  192  preprotein translocase subunit SecE  YP_378667  decreased coverage  0.000000092456  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0390  CDS  NC_007514  453033  453701  +  669  FAD-dependent thymidylate synthase  YP_378706  decreased coverage  0.00258676  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0445  CDS  NC_007514  522293  523588  +  1296  hypothetical protein  YP_378761  decreased coverage  0.00000000565981  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0485  CDS  NC_007514  564249  565466  +  1218  hypothetical protein  YP_378801  decreased coverage  0.000025501  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0548  CDS  NC_007514  652586  654568  -  1983  DNA primase  YP_378864  decreased coverage  0.00859761  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0615  CDS  NC_007514  827589  829322  +  1734  Outer membrane protein-like  YP_378931  decreased coverage  0.00243369  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0625  CDS  NC_007514  899122  899781  +  660  riboflavin synthase subunit alpha  YP_378941  decreased coverage  0.0000525495  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0645  CDS  NC_007514  918428  919213  +  786  hypothetical protein  YP_378961  decreased coverage  0.000327243  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0646  CDS  NC_007514  919226  919699  +  474  hypothetical protein  YP_378962  decreased coverage  0.0000575398  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0679  CDS  NC_007514  951102  951521  +  420  hypothetical protein  YP_378994  decreased coverage  0.000000000243663  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0685  CDS  NC_007514  955774  956076  +  303  hypothetical protein  YP_379000  decreased coverage  0.00000000000390836  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0719  CDS  NC_007514  993430  994071  -  642  hypothetical protein  YP_379033  decreased coverage  0.0000000042547  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0762  CDS  NC_007514  1073861  1074814  +  954  hypothetical protein  YP_379073  decreased coverage  0.00138696  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0860  CDS  NC_007514  1192034  1193554  -  1521  Fe-S type hydro-lyase tartrate/fumarate alpha and beta region  YP_379168  decreased coverage  0.0061897  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0909  CDS  NC_007514  1242866  1243147  +  282  hypothetical protein  YP_379217  decreased coverage  0.000839135  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0968  CDS  NC_007514  1305530  1305949  -  420  hypothetical protein  YP_379274  decreased coverage  0.000628475  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0993  CDS  NC_007514  1338916  1339215  +  300  hypothetical protein  YP_379299  decreased coverage  0.000000000032516  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0994  CDS  NC_007514  1339237  1339419  +  183  hypothetical protein  YP_379300  decreased coverage  0.000000000000859641  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_0995  CDS  NC_007514  1339426  1339704  +  279  hypothetical protein  YP_379301  decreased coverage  0.0000000000290314  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1018  CDS  NC_007514  1362394  1365447  +  3054  preprotein translocase subunit SecA  YP_379323  decreased coverage  0.00760005  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1021  CDS  NC_007514  1369800  1371317  -  1518  hypothetical protein  YP_379326  decreased coverage  0.0000100407  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1047  CDS  NC_007514  1416029  1417507  +  1479  hypothetical protein  YP_379352  decreased coverage  0.000670981  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1048  CDS  NC_007514  1417669  1421049  +  3381  hypothetical protein  YP_379353  decreased coverage  0.00227105  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1081  CDS  NC_007514  1463210  1464631  +  1422  D-alanyl-D-alanine carboxypeptidase  YP_379386  decreased coverage  0.0000806467  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1101  CDS  NC_007514  1488373  1489581  +  1209  putative transcriptional regulator  YP_379406  decreased coverage  0.0000119822  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1200  CDS  NC_007514  1595325  1596146  -  822  hypothetical protein  YP_379505  decreased coverage  0.0000000173646  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1245  CDS  NC_007514  1708036  1708389  +  354  nitrogen regulatory protein P-II (GlnB, GlnK)  YP_379549  decreased coverage  0.0000000323623  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1246  CDS  NC_007514  1708390  1708767  +  378  nitrogen regulatory protein P-II (GlnB, GlnK)  YP_379550  decreased coverage  0.0000000500613  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1252  CDS  NC_007514  1716681  1716989  +  309  ferredoxin, 2Fe-2S  YP_379556  decreased coverage  0.00000010791  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1253  CDS  NC_007514  1717111  1719333  +  2223  TonB-dependent receptor, putative  YP_379557  decreased coverage  0.0080071  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1256  CDS  NC_007514  1721839  1723560  -  1722  TPR repeat-containing protein  YP_379560  decreased coverage  0.00857901  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1286  CDS  NC_007514  1749962  1752529  -  2568  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase  YP_379590  decreased coverage  0.0000227946  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1303  CDS  NC_007514  1771065  1771571  +  507  hypothetical protein  YP_379606  decreased coverage  0.0000000000111258  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1304  CDS  NC_007514  1771601  1771909  -  309  hypothetical protein  YP_379607  decreased coverage  0.00000000000303459  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1305  CDS  NC_007514  1772111  1772395  +  285  co-chaperonin GroES  YP_379608  decreased coverage  0.00000000000222526  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1458  CDS  NC_007514  1924111  1924380  -  270  30S ribosomal protein S15  YP_379757  decreased coverage  0.0000000000852851  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1459  CDS  NC_007514  1924431  1925393  -  963  riboflavin kinase / FAD synthetase  YP_379758  decreased coverage  0.0000000664763  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1478  CDS  NC_007514  1944524  1945501  -  978  glycosyl transferase  YP_379777  decreased coverage  0.00283905  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1489  CDS  NC_007514  1959630  1960337  +  708  hypothetical protein  YP_379788  decreased coverage  0.0000000000603911  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1545  CDS  NC_007514  2025635  2026090  -  456  NUDIX/MutT family protein  YP_379843  decreased coverage  0.0000000014066  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1552  CDS  NC_007514  2034112  2034399  +  288  hypothetical protein  YP_379850  decreased coverage  0.00000000000146601  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1577  CDS  NC_007514  2060872  2061150  +  279  hypothetical protein  YP_379875  decreased coverage  0.00000000000158487  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1585  CDS  NC_007514  2069397  2071370  -  1974  adenylylsulfate reductase subunit alpha  YP_379883  decreased coverage  0.000155329  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1677  CDS  NC_007514  2177866  2178051  -  186  Ric1 protein  YP_379972  decreased coverage  0.00000000000325046  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1724  CDS  NC_007514  2240643  2240894  -  252  hypothetical protein  YP_380018  decreased coverage  0.000000000161004  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1780  CDS  NC_007514  2297911  2299116  -  1206  phosphofructokinase  YP_380074  decreased coverage  0.00000506993  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1854  CDS  NC_007514  2361788  2363902  -  2115  elongation factor G  YP_380148  decreased coverage  0.0000767386  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_1956  CDS  NC_007514  2485192  2486448  -  1257  sulfite reductase, dissimilatory-type alpha subunit  YP_380247  decreased coverage  0.000200349  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Cag_t40  tRNA  NC_007514  2025445  2025517  -  73  tRNA-Pro    decreased coverage  0.000000000171726  n/a    Chlorobium chlorochromatii CaD3  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>