57 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Mhun_0075  CDS  NC_007796  95860  96720  -  861  formate/nitrite transporter  YP_501572  decreased coverage  0.00341405  normal  0.480537  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_0212  CDS  NC_007796  237686  238564  +  879  binding-protein-dependent transport systems inner membrane component  YP_501703  decreased coverage  0.000142566  normal  1  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_0242  CDS  NC_007796  268280  269218  +  939  daunorubicin resistance ABC transporter ATP-binding subunit  YP_501733  decreased coverage  0.00751289  normal  0.894903  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_0251  CDS  NC_007796  276896  277501  +  606  hypothetical protein  YP_501742  decreased coverage  0.00204328  normal  0.639009  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_0392  CDS  NC_007796  434208  435641  -  1434  hypothetical protein  YP_501876  normal  0.296621  decreased coverage  0.00696234  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_0508  CDS  NC_007796  589851  590168  -  318  hypothetical protein  YP_501988  decreased coverage  0.00258429  normal  0.458428  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_0660  CDS  NC_007796  763098  764186  -  1089  cell division protein FtsZ  YP_502135  decreased coverage  0.00000000171768  normal  1  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_0693  CDS  NC_007796  802358  802810  -  453  hypothetical protein  YP_502165  decreased coverage  0.00231372  normal  0.0934854  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_0743  CDS  NC_007796  858896  859978  -  1083  hypothetical protein  YP_502215  decreased coverage  0.00166302  normal  0.365369  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_0759  CDS  NC_007796  874021  875226  -  1206  hypothetical protein  YP_502230  decreased coverage  0.00207585  normal  1  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_0771  CDS  NC_007796  885827  887017  +  1191  ammonium transporter  YP_502242  decreased coverage  0.00637331  normal  0.236804  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_0784  CDS  NC_007796  900397  901410  +  1014  radical SAM family protein  YP_502255  decreased coverage  0.00132902  normal  0.107419  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_0899  CDS  NC_007796  1004628  1006301  -  1674  hypothetical protein  YP_502368  decreased coverage  0.00051112  normal  0.102031  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_0929  CDS  NC_007796  1030050  1031144  -  1095  histone deacetylase superfamily protein  YP_502398  decreased coverage  0.00399276  normal  1  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_0930  CDS  NC_007796  1031141  1032586  -  1446  hydantoinase/oxoprolinase  YP_502399  decreased coverage  0.00360521  normal  1  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_0977  CDS  NC_007796  1095379  1096713  +  1335  peptidase U62, modulator of DNA gyrase  YP_502446  decreased coverage  0.00101033  normal  1  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_1002  CDS  NC_007796  1128540  1129766  -  1227  phage integrase  YP_502471  normal  0.606138  decreased coverage  0.00492215  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_1003  CDS  NC_007796  1130675  1132060  -  1386  hypothetical protein  YP_502472  normal  1  decreased coverage  0.00542972  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_1004  CDS  NC_007796  1132084  1132797  -  714  ABC transporter related  YP_502473  normal  1  decreased coverage  0.00470286  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_1172  CDS  NC_007796  1330877  1332799  +  1923  type II secretion system protein E  YP_502639  decreased coverage  0.00958345  normal  0.662669  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_1181  CDS  NC_007796  1343709  1344764  +  1056  V-type ATP synthase subunit C  YP_502648  decreased coverage  0.000792947  normal  0.370579  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_1257  CDS  NC_007796  1429169  1430269  +  1101  hypothetical protein  YP_502720  decreased coverage  0.00000018752  normal  0.209027  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_1298  CDS  NC_007796  1478592  1481591  +  3000  ATPase  YP_502758  decreased coverage  0.00022527  normal  0.161034  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_1312  CDS  NC_007796  1496661  1497134  +  474  hypothetical protein  YP_502771  normal  0.471081  decreased coverage  0.00388677  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_1324  CDS  NC_007796  1509693  1510109  +  417  iron dependent repressor  YP_502783  normal  1  decreased coverage  0.00365508  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_1325  CDS  NC_007796  1510306  1514370  +  4065  CoA enzyme activase  YP_502784  normal  0.222648  decreased coverage  0.00889318  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1326  CDS  NC_007796  1514393  1514812  +  420  hypothetical protein  YP_502785  decreased coverage  0.000406001  decreased coverage  0.00385616  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_1327  CDS  NC_007796  1515013  1515501  +  489  PadR-like family transcriptional regulator  YP_502786  hitchhiker  0.00110327  decreased coverage  0.00407043  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_1328  CDS  NC_007796  1515552  1516094  +  543  hypothetical protein  YP_502787  hitchhiker  0.00949818  decreased coverage  0.00397758  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_1351  CDS  NC_007796  1546054  1547613  +  1560  hypothetical protein  YP_502810  decreased coverage  0.00559993  normal  1  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1377  CDS  NC_007796  1575343  1576020  -  678  CRISPR-associated Cas5e family protein  YP_502836  decreased coverage  0.00215137  normal  0.352446  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1378  CDS  NC_007796  1576077  1577225  -  1149  CRISPR-associated Cse4 family protein  YP_502837  decreased coverage  0.0035432  normal  0.385916  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1401  CDS  NC_007796  1599604  1600194  +  591  ATPase  YP_502858  decreased coverage  0.00484603  normal  0.210269  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1542  CDS  NC_007796  1773234  1773434  +  201  4-oxalocrotonate tautomerase  YP_502992  decreased coverage  0.000000358699  normal  0.197708  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_1543  CDS  NC_007796  1773499  1774323  +  825  nitroreductase  YP_502993  decreased coverage  0.000000000268728  normal  0.225024  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1671    NC_007796  1892279  1892929  -  651      decreased coverage  0.00160784  normal  1  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1679  CDS  NC_007796  1902457  1902759  -  303  hypothetical protein  YP_503126  decreased coverage  0.00343092  normal  1  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1680  CDS  NC_007796  1902870  1903259  -  390  HEPN  YP_503127  decreased coverage  0.00395828  normal  1  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_1826  CDS  NC_007796  2062332  2062709  +  378  hypothetical protein  YP_503265  decreased coverage  0.0000000239073  normal  1  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2189  CDS  NC_007796  2459345  2460961  -  1617  hydroxylamine reductase  YP_503613  decreased coverage  0.00125687  normal  0.781035  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2190  CDS  NC_007796  2461047  2461406  +  360  putative transcriptional regulator  YP_503614  decreased coverage  0.000426745  normal  0.636756  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2441  CDS  NC_007796  2708858  2711848  +  2991  PKD  YP_503861  decreased coverage  0.000010419  normal  0.547756  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2465  CDS  NC_007796  2737950  2738489  +  540  putative RNA-processing protein  YP_503884  decreased coverage  0.0000000000949184  normal  1  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2498  CDS  NC_007796  2775340  2776737  +  1398  PKD  YP_503917  decreased coverage  0.0000170724  normal  1  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2719  CDS  NC_007796  2990360  2992120  -  1761  periplasmic sensor signal transduction histidine kinase  YP_504133  decreased coverage  0.000000435656  normal  1  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2720  CDS  NC_007796  2992276  2992464  +  189  hypothetical protein  YP_504134  decreased coverage  0.000000000297468  normal  1  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2721  CDS  NC_007796  2992561  2992842  +  282  DNA polymerase, beta-like region  YP_504135  decreased coverage  0.0000000000295369  normal  1  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_2722  CDS  NC_007796  2992839  2993291  +  453  hypothetical protein  YP_504136  decreased coverage  0.0000000000717542  normal  1  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2859  CDS  NC_007796  3143197  3145761  +  2565  oligosaccharyl transferase, STT3 subunit  YP_504270  decreased coverage  0.000287651  normal  0.328764  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2860  CDS  NC_007796  3145786  3146079  +  294  hypothetical protein  YP_504271  decreased coverage  0.0000103192  normal  0.710833  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2890  CDS  NC_007796  3172908  3173777  -  870  mevalonate kinase  YP_504301  decreased coverage  0.00676748  normal  0.719721  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2892  CDS  NC_007796  3174636  3175244  -  609  30S ribosomal protein S2  YP_504303  decreased coverage  0.00129354  normal  1  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2893  CDS  NC_007796  3175231  3176439  -  1209  phosphopyruvate hydratase  YP_504304  decreased coverage  0.00235502  normal  1  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_2929  CDS  NC_007796  3204465  3205130  +  666  hypothetical protein  YP_504340  decreased coverage  0.000000000125546  normal  0.197708  Methanospirillum hungatei JF-1  Archaea 
 
 
-
 
Mhun_2937  CDS  NC_007796  3211316  3212305  +  990  DNA methylase N-4/N-6  YP_504348  decreased coverage  0.000000000597198  normal  1  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_3118  CDS  NC_007796  3391947  3392687  -  741  methyltransferase type 12  YP_504523  decreased coverage  0.0061861  hitchhiker  0.0013011  Methanospirillum hungatei JF-1  Archaea 
 
 
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Mhun_3138  CDS  NC_007796  3425391  3427697  +  2307  hypothetical protein  YP_504542  decreased coverage  0.00000469073  hitchhiker  0.00590217  Methanospirillum hungatei JF-1  Archaea 
 
 
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