104 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
STER_0075  CDS  NC_008532  62721  63275  +  555  3-methyladenine DNA glycosylase  YP_819641  decreased coverage  0.00000223645  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0107  CDS  NC_008532  84991  85461  -  471  hypothetical protein  YP_819653  decreased coverage  0.00969269  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0133    NC_008532  109545  109934  +  390      decreased coverage  0.000000490253  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0187  CDS  NC_008532  152849  154039  +  1191  cyclopropane-fatty-acyl-phospholipid synthase  YP_819706  decreased coverage  0.00117459  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0207  CDS  NC_008532  174891  176054  +  1164  major facilitator superfamily permease  YP_819724  decreased coverage  0.000553672  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0258  CDS  NC_008532  220229  220561  -  333  hypothetical protein  YP_819768  decreased coverage  0.0000028904  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0261  CDS  NC_008532  224055  224207  +  153  50S ribosomal protein L33  YP_819771  decreased coverage  0.00000634475  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0262  CDS  NC_008532  224216  224392  +  177  preprotein translocase subunit SecE  YP_819772  decreased coverage  0.00000668488  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0263  CDS  NC_008532  224589  225128  +  540  transcription antitermination protein NusG  YP_819773  decreased coverage  0.000027375  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0280  CDS  NC_008532  240252  240584  +  333  cell division protein GpsB  YP_819787  decreased coverage  0.00000392973  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0356  CDS  NC_008532  312381  312860  +  480  transcriptional regulator NrdR  YP_819854  decreased coverage  0.0000016324  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0427  CDS  NC_008532  373000  373791  +  792  enoyl-CoA hydratase  YP_819911  decreased coverage  0.0000182955  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0429  CDS  NC_008532  374329  375291  +  963  3-oxoacyl-(acyl carrier protein) synthase III  YP_819913  decreased coverage  0.000771276  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0435  CDS  NC_008532  379637  380125  +  489  acetyl-CoA carboxylase biotin carboxyl carrier protein subunit  YP_819919  decreased coverage  0.00000211037  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0449  CDS  NC_008532  395383  395925  -  543  hypothetical protein  YP_819930  decreased coverage  0.0000289052  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0509  CDS  NC_008532  457889  458506  +  618  hypothetical protein  YP_819983  decreased coverage  0.0000415795  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0515  CDS  NC_008532  463281  463478  +  198  F0F1 ATP synthase subunit C  YP_819989  decreased coverage  0.0000303287  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0521  CDS  NC_008532  467769  469175  +  1407  F0F1 ATP synthase subunit beta  YP_819995  decreased coverage  0.00662178  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0524  CDS  NC_008532  471406  472602  +  1197  elongation factor Tu  YP_819998  decreased coverage  0.00168014  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0537  CDS  NC_008532  482049  483197  +  1149  N-acetylglucosamine-6-phosphate deacetylase  YP_820010  decreased coverage  0.000610642  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0555  CDS  NC_008532  499820  500341  +  522  bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase  YP_820026  decreased coverage  0.00053377  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0566  CDS  NC_008532  512115  512252  +  138  hypothetical protein  YP_820035  decreased coverage  0.0000227032  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0616  CDS  NC_008532  559887  560753  +  867  hypothetical protein  YP_820080  decreased coverage  0.00618087  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0635  CDS  NC_008532  579598  580620  +  1023  branched-chain amino acid aminotransferase  YP_820098  decreased coverage  0.000185267  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0636  CDS  NC_008532  580739  580969  +  231  hypothetical protein  YP_820099  decreased coverage  0.000000954002  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0650  CDS  NC_008532  591553  591783  +  231  hypothetical protein  YP_820108  decreased coverage  0.00000219992  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0672  CDS  NC_008532  609192  609338  +  147  50S ribosomal protein L33  YP_820127  decreased coverage  0.0000072872  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0684  CDS  NC_008532  620012  621316  +  1305  phosphopyruvate hydratase  YP_820138  decreased coverage  0.00725906  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0711  CDS  NC_008532  647690  648013  +  324  hypothetical protein  YP_820163  decreased coverage  0.000727859  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0732  CDS  NC_008532  665808  666575  +  768  hypothetical protein  YP_820184  decreased coverage  0.000019571  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0790  CDS  NC_008532  722485  723273  -  789  putative glutathione S-transferase YghU  YP_820236  decreased coverage  0.0000188448  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0850  CDS  NC_008532  783500  783736  -  237  30S ribosomal protein S20  YP_820287  decreased coverage  0.00000116553  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0851  CDS  NC_008532  783805  784725  -  921  pantothenate kinase  YP_820288  decreased coverage  0.00289921  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0862  CDS  NC_008532  796256  796738  +  483  hypothetical protein  YP_820296  decreased coverage  0.00688633  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0880  CDS  NC_008532  810319  810519  +  201  cold shock protein  YP_820312  decreased coverage  0.000035682  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0925  CDS  NC_008532  855726  856385  +  660  DNA-binding response regulator  YP_820346  decreased coverage  0.0000502161  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0956  CDS  NC_008532  883616  884251  -  636  phosphatase, putative  YP_820371  decreased coverage  0.0000103613  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0967  CDS  NC_008532  893544  893759  -  216  hypothetical protein  YP_820380  decreased coverage  0.000000145119  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_0968  CDS  NC_008532  893758  894531  +  774  dihydroorotate dehydrogenase electron transfer subunit  YP_820381  decreased coverage  0.0000278582  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1003  CDS  NC_008532  925149  925367  +  219  hypothetical protein  YP_820409  decreased coverage  0.0000646239  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1005  CDS  NC_008532  926207  927517  +  1311  rRNA methyltransferase, putative  YP_820411  decreased coverage  0.00439767  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1013  CDS  NC_008532  935410  936480  -  1071  site-specific tyrosine recombinase XerS  YP_820419  decreased coverage  0.00257725  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1014  CDS  NC_008532  936705  937694  -  990  lipoate-protein ligase  YP_820420  decreased coverage  0.00464071  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1028  CDS  NC_008532  951420  952373  -  954  ABC-type Fe3+-siderophore transport system, permease component  YP_820433  decreased coverage  0.000116719  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1050  CDS  NC_008532  975018  976154  -  1137  permease  YP_820449  decreased coverage  0.000509244  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1099  CDS  NC_008532  1015527  1016009  -  483  7,8-dihydro-8-oxoguanine-triphosphatase  YP_820488  decreased coverage  0.00000230167  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1117  CDS  NC_008532  1032360  1033127  +  768  ABC-type polar amino acid transport system, ATPase component  YP_820506  decreased coverage  0.0000186599  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1121  CDS  NC_008532  1035422  1036303  -  882  competence associated membrane nuclease  YP_820510  decreased coverage  0.000833085  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1164  CDS  NC_008532  1073225  1074244  -  1020  6-phosphofructokinase  YP_820551  decreased coverage  0.00769395  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1167  CDS  NC_008532  1078482  1079072  -  591  isopropylmalate isomerase small subunit  YP_820554  decreased coverage  0.000149275  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1180  CDS  NC_008532  1090376  1090822  -  447  transcriptional repressor protein, putative  YP_820566  decreased coverage  0.000314701  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1186  CDS  NC_008532  1094889  1094993  -  105  hypothetical protein  YP_820572  decreased coverage  0.000929494  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1187  CDS  NC_008532  1095120  1095764  -  645  endonuclease III, DNA repair  YP_820573  decreased coverage  0.00300969  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1195  CDS  NC_008532  1102873  1104111  -  1239  GTP-binding protein  YP_820581  decreased coverage  0.00118595  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1214  CDS  NC_008532  1119433  1120206  -  774  HAD family sugar phosphatase  YP_820599  decreased coverage  0.000012407  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1236  CDS  NC_008532  1139614  1140333  -  720  alpha/beta fold family hydrolase  YP_820620  decreased coverage  0.000165889  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1247  CDS  NC_008532  1154146  1154370  +  225  glutaredoxin  YP_820631  decreased coverage  0.0000466466  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1274  CDS  NC_008532  1184605  1185681  -  1077  aspartate-semialdehyde dehydrogenase  YP_820653  decreased coverage  0.000518903  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1308  CDS  NC_008532  1214105  1214863  -  759  peptide ABC transporter ATPase  YP_820683  decreased coverage  0.0000199498  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1318  CDS  NC_008532  1225323  1226708  -  1386  amino acid transporter  YP_820690  decreased coverage  0.00693769  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1331  CDS  NC_008532  1240323  1240997  -  675  type II restriction-modification system modification subunit  YP_820702  decreased coverage  0.0000710469  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1333  CDS  NC_008532  1242962  1243306  -  345  hypothetical protein  YP_820704  decreased coverage  0.000000495168  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1334  CDS  NC_008532  1243619  1243777  -  159  hypothetical protein  YP_820705  decreased coverage  0.000000142246  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1340  CDS  NC_008532  1247432  1247701  -  270  hypothetical protein  YP_820710  decreased coverage  0.00174648  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1341  CDS  NC_008532  1247829  1248017  -  189  hypothetical protein  YP_820711  decreased coverage  0.000374823  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1345  CDS  NC_008532  1250208  1250567  -  360  hypothetical protein  YP_820715  decreased coverage  0.00230339  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1368  CDS  NC_008532  1275966  1277012  -  1047  aldose 1-epimerase  YP_820737  decreased coverage  0.00941348  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1400  CDS  NC_008532  1309417  1310235  -  819  HAD superfamily hydrolase  YP_820760  decreased coverage  0.0000750549  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1421  CDS  NC_008532  1329610  1330506  -  897  ribosomal large subunit pseudouridine synthase, RluD subfamily  YP_820779  decreased coverage  0.00665782  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1425  CDS  NC_008532  1333019  1333990  +  972  ribose-phosphate pyrophosphokinase  YP_820783  decreased coverage  0.000869959  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1440  CDS  NC_008532  1348153  1348869  -  717  cell wall biosynthesis glycosyltransferase  YP_820798  decreased coverage  0.0000177815  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1458  CDS  NC_008532  1366245  1366685  -  441  hypothetical protein  YP_820815  decreased coverage  0.0000576103  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1472  CDS  NC_008532  1375978  1376868  +  891  DMT family permease  YP_820827  decreased coverage  0.00237302  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1508  CDS  NC_008532  1412735  1413562  +  828  3'-exo-deoxyribonuclease  YP_820857  decreased coverage  0.000904963  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1509  CDS  NC_008532  1413636  1414115  +  480  hypothetical protein  YP_820858  decreased coverage  0.00000920672  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1518  CDS  NC_008532  1421836  1422381  -  546  GNAT family acetyltransferase  YP_820867  decreased coverage  0.000034512  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1541  CDS  NC_008532  1444359  1445036  -  678  ABC-type amino acid transport system, permease component  YP_820889  decreased coverage  0.00154011  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1553  CDS  NC_008532  1456247  1456813  -  567  anthranilate synthase component II  YP_820901  decreased coverage  0.0000467195  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1570  CDS  NC_008532  1472144  1472935  -  792  hypothetical protein  YP_820916  decreased coverage  0.00112877  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1581  CDS  NC_008532  1482511  1482864  -  354  hypothetical protein  YP_820927  decreased coverage  0.000000588564  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1588  CDS  NC_008532  1487540  1487704  -  165  hypothetical protein  YP_820934  decreased coverage  0.0000000635017  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1599  CDS  NC_008532  1495864  1496649  -  786  transcriptional repressor CodY  YP_820943  decreased coverage  0.00104108  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1649  CDS  NC_008532  1537178  1537915  +  738  response regulator  YP_820990  decreased coverage  0.00000960447  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1678  CDS  NC_008532  1565524  1566255  -  732  ABC-type multidrug transport system, ATPase component  YP_821018  decreased coverage  0.00600162  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1684  CDS  NC_008532  1575812  1576258  -  447  response regulator  YP_821023  decreased coverage  0.00000929378  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1689  CDS  NC_008532  1578700  1580085  -  1386  Cof family protein  YP_821028  decreased coverage  0.00487865  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1698  CDS  NC_008532  1587374  1588354  -  981  abortive infection bacteriophage resistance protein  YP_821037  decreased coverage  0.00541232  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1723  CDS  NC_008532  1613527  1614471  +  945  Mg2+ and Co2+ transporter  YP_821060  decreased coverage  0.00210024  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1728  CDS  NC_008532  1617148  1617438  -  291  30S ribosomal protein S6  YP_821065  decreased coverage  0.00000419207  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1752  CDS  NC_008532  1640325  1640699  -  375  glutamine synthetase transcriptional regulator  YP_821088  decreased coverage  0.000396501  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1764  CDS  NC_008532  1651031  1651444  -  414  30S ribosomal protein S12  YP_821099  decreased coverage  0.0000016487  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1798  CDS  NC_008532  1681895  1682320  -  426  50S ribosomal protein L11  YP_821125  decreased coverage  0.00000782975  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1819  CDS  NC_008532  1697930  1698448  -  519  cytidine/deoxycytidylate deaminase family protein, putative  YP_821142  decreased coverage  0.0000174201  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1823  CDS  NC_008532  1700048  1701079  -  1032  transporter component  YP_821146  decreased coverage  0.00974172  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1824  CDS  NC_008532  1701217  1701840  -  624  EMAP domain-containing protein  YP_821147  decreased coverage  0.0000678669  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1825  CDS  NC_008532  1701850  1702164  -  315  thioredoxin  YP_821148  decreased coverage  0.000186182  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1869  CDS  NC_008532  1747506  1748240  -  735  hypothetical protein  YP_821184  decreased coverage  0.000122959  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1883  CDS  NC_008532  1756904  1757269  -  366  30S ribosomal protein S13  YP_821193  decreased coverage  0.000000566138  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1884  CDS  NC_008532  1757287  1757403  -  117  50S ribosomal protein L36  YP_821194  decreased coverage  0.0000000386083  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
STER_1894  CDS  NC_008532  1762773  1762958  -  186  30S ribosomal protein S14  YP_821204  decreased coverage  0.000000079988  n/a    Streptococcus thermophilus LMD-9  Bacteria 
 
 
-
 
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