41 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Pden_0111  CDS  NC_008686  102697  103602  -  906  hypothetical protein  YP_913924  unclonable  0.0000000000253104  decreased coverage  0.00222502  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_0112  CDS  NC_008686  103599  105035  -  1437  hypothetical protein  YP_913925  decreased coverage  0.000000224966  decreased coverage  0.000517302  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_0429  CDS  NC_008686  400357  401133  +  777  AzlC family protein  YP_914239  decreased coverage  0.000397006  normal  1  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_0610  CDS  NC_008686  586652  587821  +  1170  amidohydrolase  YP_914418  decreased coverage  0.00962709  normal  0.632979  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_0744  CDS  NC_008686  725499  726200  +  702  50S ribosomal protein L1  YP_914552  normal  1  decreased coverage  0.00583178  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_0745  CDS  NC_008686  726682  727197  +  516  50S ribosomal protein L10  YP_914553  normal  1  decreased coverage  0.00501407  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_0746  CDS  NC_008686  727265  727639  +  375  50S ribosomal protein L7/L12  YP_914554  normal  1  decreased coverage  0.00478946  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_0747  CDS  NC_008686  727881  732029  +  4149  DNA-directed RNA polymerase subunit beta  YP_914555  normal  0.712795  decreased coverage  0.00979449  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_0882  CDS  NC_008686  867833  868792  -  960  ribokinase-like domain-containing protein  YP_914689  decreased coverage  0.00379836  normal  1  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_0883  CDS  NC_008686  868792  869199  -  408  hypothetical protein  YP_914690  decreased coverage  0.00210212  normal  1  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_0896  CDS  NC_008686  879393  880181  +  789  hypothetical protein  YP_914703  decreased coverage  0.0019435  normal  0.509637  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_0897  CDS  NC_008686  880185  881033  -  849  dimethyladenosine transferase  YP_914704  decreased coverage  0.00367265  normal  0.802625  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_0946  CDS  NC_008686  928843  929733  +  891  binding-protein-dependent transport systems inner membrane component  YP_914753  decreased coverage  0.00558212  normal  1  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_1235  CDS  NC_008686  1198949  1199602  -  654  ABC transporter related  YP_915036  decreased coverage  0.000953894  normal  0.730254  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_1562  CDS  NC_008686  1535665  1536129  -  465  transcriptional regulator NrdR  YP_915358  decreased coverage  0.000599658  normal  0.0421133  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_1583  CDS  NC_008686  1560447  1562045  -  1599  glucan biosynthesis protein G  YP_915379  normal  1  decreased coverage  0.00561497  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_1589  CDS  NC_008686  1568656  1568943  -  288  hypothetical protein  YP_915385  normal  0.427706  decreased coverage  0.00475251  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_1590  CDS  NC_008686  1569043  1569678  -  636  cobyrinic acid a,c-diamide synthase  YP_915386  normal  0.950784  decreased coverage  0.00512965  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_1698  CDS  NC_008686  1681881  1682960  +  1080  fructose-1,6-bisphosphate aldolase  YP_915491  decreased coverage  0.0076037  normal  1  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_1757  CDS  NC_008686  1743278  1744984  +  1707  Serine-type D-Ala-D-Ala carboxypeptidase  YP_915550  decreased coverage  0.0000000293147  normal  0.187754  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_1783  CDS  NC_008686  1776681  1778087  +  1407  integral membrane sensor signal transduction histidine kinase  YP_915576  decreased coverage  0.0029863  normal  1  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_1812  CDS  NC_008686  1806435  1807340  +  906  ribokinase-like domain-containing protein  YP_915605  normal  0.0916129  decreased coverage  0.00793411  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_1813  CDS  NC_008686  1807328  1808242  +  915  indigoidine synthase A family protein  YP_915606  normal  0.114344  decreased coverage  0.0086217  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_1862  CDS  NC_008686  1862142  1862417  -  276  hypothetical protein  YP_915655  decreased coverage  0.00332482  normal  0.539982  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_1866  CDS  NC_008686  1865120  1865785  -  666  putative transcriptional regulator  YP_915659  decreased coverage  0.00902439  normal  0.534464  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_1867  CDS  NC_008686  1865782  1866636  -  855  chromosome segregation and condensation protein ScpA  YP_915660  decreased coverage  0.00662232  normal  0.558522  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_1930    NC_008686  1924860  1925046  -  187      normal  0.220954  decreased coverage  0.00936635  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_1936  CDS  NC_008686  1935600  1936256  +  657  lipoyltransferase  YP_915725  normal  1  decreased coverage  0.00922586  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_1937  CDS  NC_008686  1936399  1936866  +  468  cytochrome c, class I  YP_915726  normal  1  decreased coverage  0.00818219  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_1941  CDS  NC_008686  1942478  1943488  -  1011  glyoxylate reductase  YP_915730  normal  0.0819733  decreased coverage  0.00730231  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_1942  CDS  NC_008686  1943580  1944182  +  603  hypothetical protein  YP_915731  normal  0.0398084  decreased coverage  0.00719314  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_1943  CDS  NC_008686  1944200  1945057  -  858  hypothetical protein  YP_915732  normal  0.0650141  decreased coverage  0.00812028  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_1945  CDS  NC_008686  1947281  1948333  -  1053  UBA/THIF-type NAD/FAD binding protein  YP_915734  normal  0.0410103  decreased coverage  0.00836902  Paracoccus denitrificans PD1222  Bacteria 
 
 
-
 
Pden_1996  CDS  NC_008686  2002568  2004139  -  1572  hypothetical protein  YP_915784  decreased coverage  0.00622478  normal  1  Paracoccus denitrificans PD1222  Bacteria 
 
 
-
 
Pden_2054  CDS  NC_008686  2061405  2062328  +  924  hypothetical protein  YP_915842  decreased coverage  0.00000013578  unclonable  0.0000242077  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_2307  CDS  NC_008686  2305820  2307172  +  1353  cytochrome c1  YP_916094  normal  0.334325  decreased coverage  0.0079978  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_2436  CDS  NC_008686  2438382  2439323  -  942  hypothetical protein  YP_916219  decreased coverage  0.000505512  normal  0.51938  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_2448  CDS  NC_008686  2454104  2455141  +  1038  hypothetical protein  YP_916231  decreased coverage  0.00427442  normal  1  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_2642  CDS  NC_008686  2653148  2653450  +  303  hypothetical protein  YP_916425  decreased coverage  0.000000673245  normal  1  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_2759  CDS  NC_008686  2777503  2779713  -  2211  polynucleotide phosphorylase/polyadenylase  YP_916539  decreased coverage  0.00521923  normal  1  Paracoccus denitrificans PD1222  Bacteria 
 
 
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Pden_R0036  tRNA  NC_008686  1931540  1931626  -  87  tRNA-Leu    normal  0.247967  decreased coverage  0.00943738  Paracoccus denitrificans PD1222  Bacteria 
 
 
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