136 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Sden_0108  CDS  NC_007954  119777  120307  +  531  hypothetical protein  YP_561128  decreased coverage  0.000003316  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0109  CDS  NC_007954  120323  121000  +  678  response regulator receiver  YP_561129  decreased coverage  0.0000000662688  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0120  CDS  NC_007954  130359  131270  +  912  type II secretion system protein C  YP_561140  decreased coverage  0.0000735781  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0230  CDS  NC_007954  256639  257256  +  618  DNA-binding transcriptional repressor FabR  YP_561250  decreased coverage  0.000000000220471  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0231  CDS  NC_007954  257337  258434  -  1098  tRNA (uracil-5-)-methyltransferase  YP_561251  decreased coverage  0.00000000344298  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0261  CDS  NC_007954  300156  300671  +  516  shikimate kinase I  YP_561280  decreased coverage  0.000000154257  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0273  CDS  NC_007954  309227  311038  -  1812  LppC putative lipoprotein  YP_561292  decreased coverage  0.0000000539466  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0323  CDS  NC_007954  362232  362825  -  594  nucleoid occlusion protein  YP_561341  decreased coverage  0.000000549659  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0340  CDS  NC_007954  380353  381705  +  1353  aromatic hydrocarbon degradation membrane protein  YP_561358  decreased coverage  0.00000000312339  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0372  CDS  NC_007954  425545  426099  +  555  hypothetical protein  YP_561390  decreased coverage  0.00000000170684  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0419  CDS  NC_007954  491176  491523  -  348  hypothetical protein  YP_561435  decreased coverage  0.00000388405  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0445  CDS  NC_007954  515431  516399  -  969  dihydrouridine synthase TIM-barrel protein nifR3  YP_561460  decreased coverage  0.0000000152787  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0498  CDS  NC_007954  568521  568994  +  474  hypothetical protein  YP_561513  decreased coverage  0.000000028229  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0506  CDS  NC_007954  575953  576381  +  429  50S ribosomal protein L13  YP_561521  decreased coverage  0.0000000000158843  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0526  CDS  NC_007954  595050  595409  +  360  hypothetical protein  YP_561541  decreased coverage  0.0000000000223061  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0536  CDS  NC_007954  604053  606959  -  2907  ATP-dependent helicase HepA  YP_561551  decreased coverage  0.00420482  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0566  CDS  NC_007954  641213  642133  +  921  hypothetical protein  YP_561579  decreased coverage  0.0000270082  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0582  CDS  NC_007954  661252  663381  -  2130  TonB-dependent receptor, plug  YP_561595  decreased coverage  0.000000470025  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0583  CDS  NC_007954  663507  663899  -  393  ParB-like nuclease  YP_561596  decreased coverage  0.000000149246  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0701  CDS  NC_007954  808579  809538  -  960  hypothetical protein  YP_561714  decreased coverage  0.0000000123312  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0707  CDS  NC_007954  815833  816747  -  915  ErfK/YbiS/YcfS/YnhG  YP_561720  decreased coverage  0.000000000409779  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0739  CDS  NC_007954  858689  859333  +  645  glutathione S-transferase-like protein  YP_561752  decreased coverage  0.000125702  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0740  CDS  NC_007954  859449  859949  -  501  hypothetical protein  YP_561753  decreased coverage  0.000203019  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0748  CDS  NC_007954  869865  870593  +  729  thiol:disulfide interchange protein DsbC  YP_561761  decreased coverage  0.000000000286403  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0827  CDS  NC_007954  948369  949121  +  753  short chain dehydrogenase  YP_561839  decreased coverage  0.0000000371771  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0852  CDS  NC_007954  975390  976283  -  894  rare lipoprotein A  YP_561863  decreased coverage  0.000000000569682  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0872  CDS  NC_007954  996624  997736  +  1113  permease YjgP/YjgQ  YP_561883  decreased coverage  0.00000506114  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0910  CDS  NC_007954  1037517  1038794  +  1278  4-aminobutyrate aminotransferase  YP_561921  decreased coverage  0.0000169324  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0919  CDS  NC_007954  1049263  1050513  +  1251  glutamyl-tRNA reductase  YP_561930  decreased coverage  0.0000000505435  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0954  CDS  NC_007954  1093018  1094373  +  1356  peptidase S41  YP_561965  decreased coverage  0.0000000432114  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0955  CDS  NC_007954  1094511  1095428  -  918  phospholipase A1  YP_561966  decreased coverage  0.0000000243291  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0989  CDS  NC_007954  1127946  1128170  +  225  hypothetical protein  YP_562000  decreased coverage  0.00000000000803888  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0990  CDS  NC_007954  1128386  1128856  +  471  bacterioferritin  YP_562001  decreased coverage  0.000000000039605  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0991  CDS  NC_007954  1128921  1129388  +  468  bacterioferritin  YP_562002  decreased coverage  0.0000000000307533  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_0992  CDS  NC_007954  1129560  1130378  +  819  peptidase M48, Ste24p  YP_562003  decreased coverage  0.000000000166595  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1087  CDS  NC_007954  1245229  1245969  +  741  hypothetical protein  YP_562098  decreased coverage  0.000000000312385  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1088  CDS  NC_007954  1246071  1246958  +  888  transposase, IS4  YP_562099  decreased coverage  0.0000000830574  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1122  CDS  NC_007954  1289822  1290790  +  969  beta-lactamase-like protein  YP_562133  decreased coverage  0.000282936  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1146  CDS  NC_007954  1317229  1318332  +  1104  3,4-dihydroxy-2-butanone 4-phosphate synthase  YP_562155  decreased coverage  0.00000372941  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1189  CDS  NC_007954  1381604  1382602  -  999  auxin efflux carrier  YP_562198  decreased coverage  0.0000379435  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1203  CDS  NC_007954  1398784  1399719  +  936  peptidase M23B  YP_562212  decreased coverage  0.0000000304892  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1245  CDS  NC_007954  1454531  1456198  +  1668  malate synthase  YP_562254  decreased coverage  0.000965788  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1272  CDS  NC_007954  1485406  1486890  -  1485  putative transglycosylase  YP_562281  decreased coverage  0.0000000129454  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1358  CDS  NC_007954  1578944  1579573  +  630  OmpA/MotB  YP_562367  decreased coverage  0.0000000000545475  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1359  CDS  NC_007954  1579594  1580421  +  828  MscS mechanosensitive ion channel  YP_562368  decreased coverage  0.000000000124466  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1360  CDS  NC_007954  1580418  1581032  +  615  antioxidant Tpx  YP_562369  decreased coverage  0.0000000000292969  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1401  CDS  NC_007954  1633803  1634936  +  1134  queuine tRNA-ribosyltransferase  YP_562410  decreased coverage  0.0000000397481  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1402  CDS  NC_007954  1635013  1635288  +  276  preprotein translocase subunit YajC  YP_562411  decreased coverage  0.0000000229037  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1455  CDS  NC_007954  1691036  1691815  +  780  RNA methyltransferase TrmH, group 1  YP_562463  decreased coverage  0.000119002  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1465  CDS  NC_007954  1699118  1699927  -  810  exonuclease III  YP_562473  decreased coverage  0.00148193  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1481  CDS  NC_007954  1712131  1714395  -  2265  FAD dependent oxidoreductase  YP_562489  decreased coverage  0.00000425578  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1488  CDS  NC_007954  1726028  1726726  +  699  sporulation related  YP_562496  decreased coverage  0.000050806  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1492  CDS  NC_007954  1730630  1732516  +  1887  hypothetical protein  YP_562500  decreased coverage  0.00000165722  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1493  CDS  NC_007954  1732670  1733500  -  831  methylated-DNA--protein-cysteine methyltransferase  YP_562501  decreased coverage  0.0000000302117  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1555  CDS  NC_007954  1808848  1809699  +  852  elongation factor Ts  YP_562563  decreased coverage  0.00000000849908  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1561  CDS  NC_007954  1814225  1815595  +  1371  peptidase M50, putative membrane-associated zinc metallopeptidase  YP_562569  decreased coverage  0.00000461405  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1564  CDS  NC_007954  1818680  1819702  +  1023  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase  YP_562572  decreased coverage  0.00000000128344  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1565  CDS  NC_007954  1819730  1820191  +  462  (3R)-hydroxymyristoyl-ACP dehydratase  YP_562573  decreased coverage  0.0000000000561633  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1586  CDS  NC_007954  1843575  1844708  +  1134  secretion protein HlyD  YP_562593  decreased coverage  0.0000231295  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1635  CDS  NC_007954  1898301  1899020  +  720  fatty acid metabolism regulator  YP_562642  decreased coverage  0.000000000115144  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1641  CDS  NC_007954  1905432  1906655  -  1224  uracil-xanthine permease  YP_562648  decreased coverage  0.0000923826  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1655  CDS  NC_007954  1920888  1922639  -  1752  gamma-glutamyltransferase  YP_562662  decreased coverage  0.000000129294  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1711  CDS  NC_007954  2014691  2015899  -  1209  secretion protein HlyD  YP_562718  decreased coverage  0.0000000765458  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1737  CDS  NC_007954  2051771  2052853  +  1083  secretion protein HlyD  YP_562744  decreased coverage  0.0000000190652  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1742  CDS  NC_007954  2061290  2061790  +  501  leucine-responsive transcriptional regulator  YP_562749  decreased coverage  0.00000000110042  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1809  CDS  NC_007954  2134906  2135565  -  660  hypothetical protein  YP_562816  decreased coverage  0.000000000169879  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1810  CDS  NC_007954  2135717  2136619  -  903  putative DNA-binding transcriptional regulator  YP_562817  decreased coverage  0.00000000533162  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1851  CDS  NC_007954  2176556  2177989  -  1434  cbb3-type cytochrome c oxidase subunit I  YP_562858  decreased coverage  0.000000190326  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1852  CDS  NC_007954  2178255  2178773  +  519  hypothetical protein  YP_562859  decreased coverage  0.0000309219  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1890  CDS  NC_007954  2219617  2220609  +  993  methyltransferase, putative  YP_562896  decreased coverage  0.0000000006524  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1900  CDS  NC_007954  2230843  2232858  -  2016  NADH:flavin oxidoreductase/NADH oxidase  YP_562906  decreased coverage  0.0000127564  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1948  CDS  NC_007954  2306685  2309411  -  2727  DNA gyrase, A subunit  YP_562954  decreased coverage  0.00000559672  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1993  CDS  NC_007954  2357715  2358929  +  1215  aminotransferase AlaT  YP_562999  decreased coverage  0.00000000340923  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_1994  CDS  NC_007954  2359039  2359626  +  588  hypothetical protein  YP_563000  decreased coverage  0.000000000122059  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2009  CDS  NC_007954  2383567  2385942  -  2376  phosphoenolpyruvate synthase  YP_563015  decreased coverage  0.00000127973  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2021  CDS  NC_007954  2396508  2397284  +  777  hydroxyacylglutathione hydrolase  YP_563027  decreased coverage  0.00000000360558  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2022  CDS  NC_007954  2397418  2398974  +  1557  lytic transglycosylase, catalytic  YP_563028  decreased coverage  0.0000000299101  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2080  CDS  NC_007954  2468490  2469350  +  861  DNA-binding transcriptional regulator HexR  YP_563085  decreased coverage  0.00496237  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2092  CDS  NC_007954  2486362  2487699  +  1338  Na+/H+ antiporter NhaC  YP_563097  decreased coverage  0.0000144395  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2116  CDS  NC_007954  2513621  2514265  -  645  regulatory protein, TetR  YP_563121  decreased coverage  0.0000000093152  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2117  CDS  NC_007954  2514456  2516294  +  1839  peptidyl-dipeptidase A  YP_563122  decreased coverage  0.00000679972  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2188    NC_007954  2594534  2594836  -  303      decreased coverage  0.00000531421  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2219  CDS  NC_007954  2634821  2636707  -  1887  nitrous-oxide reductase  YP_563222  decreased coverage  0.000181055  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2220  CDS  NC_007954  2636787  2638937  -  2151  FMN-binding  YP_563223  decreased coverage  0.000053417  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2310  CDS  NC_007954  2735625  2736065  +  441  hypothetical protein  YP_563313  decreased coverage  0.0000910912  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2483  CDS  NC_007954  2960672  2961703  +  1032  binding-protein-dependent transport systems inner membrane component  YP_563486  decreased coverage  0.0000884166  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2495  CDS  NC_007954  2975144  2975755  -  612  ATP-dependent Clp protease proteolytic subunit  YP_563498  decreased coverage  0.00000000198217  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2554  CDS  NC_007954  3053934  3055784  -  1851  peptidase M61  YP_563556  decreased coverage  0.0000000699097  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2571  CDS  NC_007954  3075452  3077320  +  1869  1-deoxy-D-xylulose-5-phosphate synthase  YP_563573  decreased coverage  0.000000155122  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2592  CDS  NC_007954  3102250  3103236  -  987  fumarylacetoacetate (FAA) hydrolase  YP_563594  decreased coverage  0.0000000318978  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2683  CDS  NC_007954  3214654  3215472  +  819  pyrroline-5-carboxylate reductase  YP_563685  decreased coverage  0.0000101037  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2691  CDS  NC_007954  3222511  3223422  +  912  recombination associated protein  YP_563693  decreased coverage  0.000000150685  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2700  CDS  NC_007954  3232815  3233702  +  888  transposase, IS4  YP_563702  decreased coverage  0.00130317  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2706  CDS  NC_007954  3239914  3240813  -  900  ATPase, BadF/BadG/BcrA/BcrD type  YP_563708  decreased coverage  0.00102346  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2710  CDS  NC_007954  3247613  3248899  -  1287  NADH dehydrogenase  YP_563712  decreased coverage  0.00000000265247  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2725  CDS  NC_007954  3263601  3265160  -  1560  integral membrane protein MviN  YP_563727  decreased coverage  0.0000000329749  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2735  CDS  NC_007954  3277299  3278936  +  1638  glucose-6-phosphate isomerase  YP_563737  decreased coverage  0.000000381745  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2736  CDS  NC_007954  3279124  3279303  +  180  hypothetical protein  YP_563738  decreased coverage  0.0000017749  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2884  CDS  NC_007954  3445272  3446411  -  1140  aminoglycoside phosphotransferase  YP_563886  decreased coverage  0.0000000016497  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
Sden_2886  CDS  NC_007954  3449000  3450304  +  1305  PpiC-type peptidyl-prolyl cis-trans isomerase  YP_563888  decreased coverage  0.00000000330996  n/a    Shewanella denitrificans OS217  Bacteria 
 
 
-
 
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