81 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
DhcVS_1042  CDS  NC_013552  968201  969091  +  891  hypothetical protein  YP_003330487  decreased coverage  0.000000000195409  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1044  CDS  NC_013552  970375  971760  +  1386  argininosuccinate lyase  YP_003330489  decreased coverage  0.0000000156522  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1045  CDS  NC_013552  971770  971958  -  189  ribosomal protein L28  YP_003330490  decreased coverage  0.000000000000342446  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1057  CDS  NC_013552  983957  984376  +  420  hypothetical protein  YP_003330502  decreased coverage  0.00000225436  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1063  CDS  NC_013552  987298  988809  -  1512  radical SAM domain protein  YP_003330508  decreased coverage  0.000246609  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1069  CDS  NC_013552  995504  996352  -  849  serine protease, DegP/HtrA family  YP_003330514  decreased coverage  0.000000000128522  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1102  CDS  NC_013552  1022783  1023331  +  549  iron-sulfur flavoprotein  YP_003330545  decreased coverage  0.000321891  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1109  CDS  NC_013552  1027370  1027576  +  207  ribosomal protein L31  YP_003330552  decreased coverage  0.000000439538  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1141  CDS  NC_013552  1053728  1054843  +  1116  Tfp pilus assembly protein pilus retraction ATPase  YP_003330583  decreased coverage  0.000163324  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1142  CDS  NC_013552  1054981  1055346  -  366  general secretion  YP_003330584  decreased coverage  0.0000033549  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1149  CDS  NC_013552  1061858  1062862  +  1005  radical SAM domain protein  YP_003330591  decreased coverage  0.00000033704  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1150  CDS  NC_013552  1062881  1063069  -  189  hypothetical protein  YP_003330592  decreased coverage  0.00000000343389  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1157  CDS  NC_013552  1067363  1067644  +  282  hypothetical protein  YP_003330599  decreased coverage  0.000220051  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1183  CDS  NC_013552  1092104  1093141  -  1038  heat-inducible transcription repressor  YP_003330623  decreased coverage  0.0000000556143  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1186  CDS  NC_013552  1095556  1096053  +  498  hypothetical protein  YP_003330626  decreased coverage  0.00000000107945  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1188  CDS  NC_013552  1096558  1099578  -  3021  BNR/Asp-box repeat domain protein  YP_003330628  decreased coverage  0.00105503  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1234  CDS  NC_013552  1139392  1139973  +  582  2 -5 RNA ligase  YP_003330669  decreased coverage  0.00152481  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1272  CDS  NC_013552  1170322  1170777  +  456  transcriptional regulator, MarR family  YP_003330701  decreased coverage  0.00000258354  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1391  CDS  NC_013552  1286070  1286645  -  576  hypothetical protein  YP_003330818  decreased coverage  0.0000000000157564  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1414  CDS  NC_013552  1313387  1313824  -  438  hypothetical protein  YP_003330841  decreased coverage  0.00000000201843  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1415  CDS  NC_013552  1313845  1314276  -  432  transcriptional regulator, MerR family  YP_003330842  decreased coverage  0.0000000599633  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1419  CDS  NC_013552  1321388  1321837  -  450  transcriptional regulator, MarR family  YP_003330846  decreased coverage  0.00000012413  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1425  CDS  NC_013552  1328611  1329045  -  435  transcriptional regulator, MarR family  YP_003330852  decreased coverage  0.00000183879  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1440  CDS  NC_013552  1341891  1343381  -  1491  glutamyl-tRNA(Gln) amidotransferase, B subunit  YP_003330867  decreased coverage  0.000724342  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1457  CDS  NC_013552  1357364  1357951  -  588  transcription regulator, TetR family  YP_003330883  decreased coverage  0.00000222834  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1469  CDS  NC_013552  1368004  1368384  +  381  hypothetical protein  YP_003330894  decreased coverage  0.0000000000239156  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1475  CDS  NC_013552  1372385  1373050  -  666  methyltransferase, UbiE/COQ5 family  YP_003330900  decreased coverage  0.000000000576982  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_1520  CDS  NC_013552  1410052  1410750  -  699  Zn-dependent protease  YP_003330943  decreased coverage  0.000439151  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_176  CDS  NC_013552  174337  177318  -  2982  molybdopterin oxidoreductase, formate dehydrogenase alpha subunit  YP_003329675  decreased coverage  0.000885934  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_177  CDS  NC_013552  177698  178276  +  579  methyltransferase  YP_003329676  decreased coverage  0.000000000132935  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_182  CDS  NC_013552  180569  183010  -  2442  leucyl-tRNA synthetase  YP_003329681  decreased coverage  0.00206077  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_187  CDS  NC_013552  186030  186536  +  507  rubredoxin-type iron-sulfur protein  YP_003329686  decreased coverage  0.0000349376  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_188  CDS  NC_013552  186624  187535  +  912  hypothetical protein  YP_003329687  decreased coverage  0.000488554  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_190  CDS  NC_013552  188757  189989  +  1233  histidinol-phosphate phosphatase protein/glycosyl transferase  YP_003329689  decreased coverage  0.00438992  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_194  CDS  NC_013552  192548  193522  +  975  oxidoreductase, aldo/keto reductase family  YP_003329693  decreased coverage  0.00647949  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_20  CDS  NC_013552  19520  20824  -  1305  hypothetical protein  YP_003329528  decreased coverage  0.00632625  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_24  CDS  NC_013552  23425  23925  -  501  competence protein  YP_003329531  decreased coverage  0.0000137155  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_282  CDS  NC_013552  275753  276802  +  1050  S-adenosyl-methyltransferase  YP_003329771  decreased coverage  0.000000000442175  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_328  CDS  NC_013552  319835  320980  -  1146  IMP dehydrogenase protein  YP_003329814  decreased coverage  0.0000257669  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_329  CDS  NC_013552  321181  322005  +  825  tetrapyrrole methylase  YP_003329815  decreased coverage  0.0000393533  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_359  CDS  NC_013552  346158  346508  +  351  nucleoside diphosphate kinase  YP_003329844  decreased coverage  0.00000000760928  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_375  CDS  NC_013552  361925  362608  -  684  hypothetical protein  YP_003329859  decreased coverage  0.00000408583  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_423  CDS  NC_013552  403227  404063  +  837  ribosomal protein S3  YP_003329906  decreased coverage  0.0000000652723  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_429a  CDS  NC_013552  406244  406429  +  186  30S ribosomal protein S14  YP_003864090  decreased coverage  0.00000000000656242  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_430  CDS  NC_013552  406463  406858  +  396  ribosomal protein S8  YP_003329913  decreased coverage  0.0000000000283482  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_454  CDS  NC_013552  421046  422302  -  1257  S-adenosylhomocysteine hydrolase  YP_003329936  decreased coverage  0.0000135166  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_455  CDS  NC_013552  422310  423872  -  1563  hypothetical protein  YP_003329937  decreased coverage  0.000133416  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_463  CDS  NC_013552  429598  430011  +  414  acyl dehydratase  YP_003329945  decreased coverage  0.000000121955  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_464  CDS  NC_013552  429998  430558  -  561  acetyltransferase, GNAT family  YP_003329946  decreased coverage  0.0000240753  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_491  CDS  NC_013552  460468  462030  -  1563  DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)  YP_003329973  decreased coverage  0.0000000448627  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_50  CDS  NC_013552  41249  43879  +  2631  alanyl-tRNA synthetase  YP_003329554  decreased coverage  0.000334801  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_54  rRNA  NC_013552  47031  49975  +  2945  23S ribosomal RNA    decreased coverage  0.00112496  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_552  CDS  NC_013552  522758  523696  +  939  nickel-dependent hydrogenase, group 3, small subunit  YP_003330032  decreased coverage  0.000367769  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_597  CDS  NC_013552  562418  563020  +  603  phosphoglycerate mutase family  YP_003330074  decreased coverage  0.00000681703  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_640  CDS  NC_013552  600491  600877  +  387  hypothetical protein  YP_003330109  decreased coverage  0.00000000000170615  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_641  tRNA  NC_013552  600894  600968  +  75  tRNA-Met    decreased coverage  0.0000000000000945354  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_660  CDS  NC_013552  618046  620577  -  2532  hypothetical protein  YP_003330127  decreased coverage  0.000729643  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_689  CDS  NC_013552  643803  644456  +  654  translin  YP_003330154  decreased coverage  0.00000000518414  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_719  CDS  NC_013552  669091  669846  +  756  ABC-type transport system involved in Fe-S cluster assembly ATPase component  YP_003330180  decreased coverage  0.0000000572686  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_730  CDS  NC_013552  678389  679486  -  1098  3-isopropylmalate dehydrogenase  YP_003330190  decreased coverage  0.0000128158  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_738  CDS  NC_013552  686700  688367  -  1668  dihydroxy-acid dehydratase  YP_003330198  decreased coverage  0.0000109399  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_747  CDS  NC_013552  695937  697013  -  1077  histidinol-phosphate aminotransferase  YP_003330207  decreased coverage  0.000000600675  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_761  CDS  NC_013552  707181  708317  +  1137  oxygen-independent coproporphyrinogen III oxidase  YP_003330220  decreased coverage  0.0000202557  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_829  CDS  NC_013552  771592  772236  -  645  hypothetical protein  YP_003330287  decreased coverage  0.000000000604863  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_830  tRNA  NC_013552  772383  772458  -  76  tRNA-Arg    decreased coverage  0.00000000213386  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_838  CDS  NC_013552  779341  779973  +  633  hypothetical protein  YP_003330294  decreased coverage  0.00000326909  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_857  CDS  NC_013552  798275  799738  -  1464  transcription elongation factor  YP_003330312  decreased coverage  0.000000272174  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_862  CDS  NC_013552  803631  804005  -  375  ribosomal protein L7/L12  YP_003330317  decreased coverage  0.0000472874  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_869  CDS  NC_013552  806873  808075  -  1203  translation elongation factor  YP_003330324  decreased coverage  0.00000000280578  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_870  tRNA  NC_013552  808104  808179  -  76  tRNA-Thr    decreased coverage  0.000000000000136902  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_871  tRNA  NC_013552  808242  808325  -  84  tRNA-Tyr    decreased coverage  0.000000000000164739  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_872  tRNA  NC_013552  808366  808438  -  73  tRNA-Thr    decreased coverage  0.000000000000166459  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_897  CDS  NC_013552  831119  831865  +  747  ribonuclease III  YP_003330345  decreased coverage  0.000000000334707  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_898  CDS  NC_013552  831895  832035  +  141  hypothetical protein  YP_003330346  decreased coverage  0.00000000000187348  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_899  CDS  NC_013552  832057  832332  +  276  acylphosphatase-like protein  YP_003330347  decreased coverage  0.0000000000672405  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_916  CDS  NC_013552  849529  849936  -  408  single-stranded DNA-binding protein  YP_003330364  decreased coverage  0.0000000000232202  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_917  CDS  NC_013552  849984  850313  -  330  ribosomal protein S6  YP_003330365  decreased coverage  0.0000000000118903  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_932  CDS  NC_013552  863746  865422  -  1677  ABC-type oligopeptide transport system, periplasmic component  YP_003330379  decreased coverage  0.00000268358  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_961  CDS  NC_013552  894941  895762  -  822  hypothetical protein  YP_003330408  decreased coverage  0.0043963  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_962  CDS  NC_013552  895915  896610  +  696  hypothetical protein  YP_003330409  decreased coverage  0.0000132162  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
DhcVS_990  CDS  NC_013552  923020  924285  -  1266  protein export protein  YP_003330435  decreased coverage  0.00000000184854  n/a    Dehalococcoides sp. VS  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>