39 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Cla_0059  CDS  NC_012039  57221  57796  +  576  50S ribosomal protein L3  YP_002574676  decreased coverage  6.39539e-19  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_0101  CDS  NC_012039  85928  86509  +  582  imidazole glycerol phosphate synthase subunit HisH  YP_002574718  decreased coverage  1.99999e-16  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_0107  CDS  NC_012039  90993  93437  +  2445  flagellar hook protein FlgE  YP_002574724  decreased coverage  0.00000000000370744  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_0168  CDS  NC_012039  151821  153737  -  1917  motility accessory factor  YP_002574782  decreased coverage  0.0000847186  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_0194  CDS  NC_012039  173928  174812  +  885  F0F1 ATP synthase subunit gamma  YP_002574808  decreased coverage  0.000126351  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_0200  CDS  NC_012039  178407  179606  +  1200  translocation protein TolB  YP_002574814  decreased coverage  0.000000701864  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_0344  CDS  NC_012039  316474  318786  +  2313  type I restriction-modification system, R subunit  YP_002574955  decreased coverage  0.00000108762  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_0346  CDS  NC_012039  319405  320193  +  789  hypothetical protein  YP_002574957  decreased coverage  0.000000969355  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_0348  CDS  NC_012039  321450  322478  +  1029  hypothetical protein  YP_002574959  decreased coverage  0.0000520981  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_0435  CDS  NC_012039  411466  412206  -  741  conserved hypothetical protein (DUF328 domain protein)  YP_002575044  decreased coverage  0.000000530905  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_0436  tRNA  NC_012039  412298  412370  +  73  tRNA-Thr    decreased coverage  0.000000026283  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_0437  tRNA  NC_012039  412421  412503  +  83  tRNA-Tyr    decreased coverage  0.0000000253794  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_0592  CDS  NC_012039  564754  565512  +  759  amino acid ABC transporter, permease/substrate-binding lipoprotein  YP_002575176  decreased coverage  0.00000000000000143889  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_0730  CDS  NC_012039  698695  699663  +  969  hypothetical protein  YP_002575310  decreased coverage  0.0000190303  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_0735  CDS  NC_012039  702613  703680  +  1068  integrase/recombinase  YP_002575315  decreased coverage  0.000138239  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_0841  CDS  NC_012039  800455  800922  -  468  hypothetical protein  YP_002575418  decreased coverage  0.00000000000000257865  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_0864  CDS  NC_012039  820831  821631  +  801  hypothetical protein  YP_002575441  decreased coverage  7.60334e-18  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_0873  CDS  NC_012039  829071  830465  -  1395  hypothetical protein  YP_002575450  decreased coverage  0.0096432  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_0882    NC_012039  839367  840846  +  1480      decreased coverage  0.0012399  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_0885  CDS  NC_012039  842150  843319  -  1170  hypothetical protein  YP_002575461  decreased coverage  0.000693381  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_0890  CDS  NC_012039  849165  849992  -  828  NAD-dependent protein deacetylase (SIR2 family), putative  YP_002575466  decreased coverage  0.0094897  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_1008  CDS  NC_012039  961441  963375  -  1935  tRNA nucleotidyltransferase/formyltetrahydrofolate deformylase  YP_002575582  decreased coverage  0.00246463  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_1145  CDS  NC_012039  1094158  1095519  +  1362  conserved hypothetical protein, putative sodium/sulfate transporter  YP_002575718  decreased coverage  0.00119531  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_1151  CDS  NC_012039  1099057  1099815  -  759  hypothetical protein  YP_002575724  decreased coverage  0.00000000000096412  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_1233  CDS  NC_012039  1186722  1187615  -  894  conserved hypothetical protein, putative formyltransferase  YP_002575805  decreased coverage  0.000000667548  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_1234  CDS  NC_012039  1187612  1188784  -  1173  flagellin modification protein PtmD, putative UDP-N-acetylglucosamine 2-epimerase  YP_002575806  decreased coverage  0.0000000498244  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_1236  CDS  NC_012039  1189797  1190687  -  891  formyltransferase, putative  YP_002575808  decreased coverage  0.000000369668  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_1237  CDS  NC_012039  1190724  1191731  -  1008  NAD-dependent epimerase/dehydratase family protein  YP_002575809  decreased coverage  0.000000110601  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_1240  CDS  NC_012039  1192930  1194135  +  1206  glycosyltransferase  YP_002575811  decreased coverage  0.000000000212379  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_1241  CDS  NC_012039  1194139  1195059  +  921  glycosyltransferase  YP_002575812  decreased coverage  0.00000261425  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_1269  CDS  NC_012039  1223891  1224295  +  405  conserved hypothetical protein, putative acyl-coA thioester hydrolase  YP_002575839  decreased coverage  0.00039467  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_1314  CDS  NC_012039  1264891  1265856  +  966  3-oxoacyl-(acyl carrier protein) synthase III FabH2, putative  YP_002575883  decreased coverage  0.00000000461797  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_1320  CDS  NC_012039  1270664  1271359  +  696  CMP-N-acetylneuraminic acid synthetase  YP_002575887  decreased coverage  0.0000000000296134  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_1451  CDS  NC_012039  1391333  1393276  -  1944  BCCT (betaine/carnitine/choline) family transporter  YP_002576018  decreased coverage  0.000000000000418555  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_a003  CDS  NC_012040  7383  7985  -  603  site-specific recombinase/resolvase  YP_002576127  decreased coverage  0.0000421132  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_a004  CDS  NC_012040  8107  8331  -  225  hypothetical protein  YP_002576128  decreased coverage  0.000609171  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_a034  CDS  NC_012040  38950  40185  -  1236  DNA primase TraC  YP_002576158  decreased coverage  0.000906567  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_a040  CDS  NC_012040  44411  45121  -  711  hypothetical protein  YP_002576164  decreased coverage  0.0000000292209  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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Cla_a041  CDS  NC_012040  45193  45465  -  273  hypothetical protein  YP_002576165  decreased coverage  0.00000000121125  n/a    Campylobacter lari RM2100  Bacteria 
 
 
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