84 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Jann_0019  CDS  NC_007802  17961  18653  -  693  hypothetical protein  YP_507961  decreased coverage  0.0000000525215  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_0662  CDS  NC_007802  632785  633369  +  585  hypothetical protein  YP_508604  decreased coverage  0.00108273  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_0854  CDS  NC_007802  809262  810542  +  1281  hypothetical protein  YP_508796  decreased coverage  0.00337014  normal  0.161189  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_0935  CDS  NC_007802  890097  890867  -  771  molybdenum cofactor sulfurylase  YP_508877  decreased coverage  0.00742459  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_0996  CDS  NC_007802  954941  955594  -  654  OmpA/MotB  YP_508938  decreased coverage  0.00954644  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1095  CDS  NC_007802  1056746  1057057  +  312  arsenate reductase and related  YP_509037  normal  1  decreased coverage  0.00527504  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1096  CDS  NC_007802  1057146  1057514  +  369  hypothetical protein  YP_509038  normal  1  decreased coverage  0.0052386  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1097  CDS  NC_007802  1057511  1058137  -  627  hypothetical protein  YP_509039  normal  0.68714  decreased coverage  0.00547678  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1161  CDS  NC_007802  1125076  1126035  -  960  hypothetical protein  YP_509103  decreased coverage  0.0000162598  normal  0.390366  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1162  CDS  NC_007802  1126131  1127327  -  1197  aminotransferase, class V  YP_509104  decreased coverage  0.000700049  normal  0.406686  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1302  CDS  NC_007802  1260529  1261572  -  1044  inner-membrane translocator  YP_509244  decreased coverage  0.00194364  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1390  CDS  NC_007802  1359611  1360945  -  1335  extracellular solute-binding protein  YP_509332  decreased coverage  0.00129811  normal  0.103249  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1398  CDS  NC_007802  1368157  1369464  +  1308  histidinol dehydrogenase  YP_509340  normal  1  decreased coverage  0.00269517  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1399  CDS  NC_007802  1369457  1370218  +  762  short-chain dehydrogenase/reductase SDR  YP_509341  normal  1  decreased coverage  0.00235361  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1400  CDS  NC_007802  1370215  1371201  +  987  alcohol dehydrogenase GroES-like protein  YP_509342  normal  1  decreased coverage  0.00260495  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1401  CDS  NC_007802  1371235  1371741  +  507  sulfopyruvate decarboxylase subunit alpha  YP_509343  normal  1  decreased coverage  0.00255271  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1402  CDS  NC_007802  1371738  1372292  +  555  thiamine pyrophosphate enzyme-like TPP-binding  YP_509344  normal  1  decreased coverage  0.00264057  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1403  CDS  NC_007802  1372295  1373401  +  1107  FMN-dependent alpha-hydroxy acid dehydrogenase  YP_509345  normal  1  decreased coverage  0.00336342  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1464  CDS  NC_007802  1433261  1434751  +  1491  ABC transporter related  YP_509406  decreased coverage  0.00931771  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1496  CDS  NC_007802  1467158  1467730  -  573  TetR family transcriptional regulator  YP_509438  decreased coverage  0.00000100434  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1497  CDS  NC_007802  1467824  1468768  +  945  substrate-binding region of ABC-type glycine betaine transport system  YP_509439  decreased coverage  0.000000845092  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1593  CDS  NC_007802  1574118  1575923  -  1806  BCCT transporter  YP_509535  decreased coverage  0.00794806  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1702  CDS  NC_007802  1685805  1686239  +  435  hypothetical protein  YP_509644  decreased coverage  0.00638023  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1708  CDS  NC_007802  1690670  1691125  +  456  hypothetical protein  YP_509650  decreased coverage  0.000851441  normal  0.864982  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1732  CDS  NC_007802  1725042  1726331  +  1290  peptidase-like  YP_509674  decreased coverage  0.00151999  normal  0.451839  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1759  CDS  NC_007802  1747454  1748410  +  957  hypothetical protein  YP_509701  decreased coverage  0.000516286  normal  0.605124  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1854  CDS  NC_007802  1841576  1842769  +  1194  O-succinylhomoserine sulfhydrylase  YP_509796  normal  0.58476  decreased coverage  0.00243487  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1855  CDS  NC_007802  1842766  1843260  +  495  acetyltransferase  YP_509797  normal  1  decreased coverage  0.00212517  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1856  CDS  NC_007802  1843257  1843988  +  732  glutamine amidotransferase  YP_509798  normal  0.991157  decreased coverage  0.0021836  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1857  CDS  NC_007802  1844107  1845195  +  1089  putative GTP cyclohydrolase  YP_509799  normal  1  decreased coverage  0.00229026  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1937  CDS  NC_007802  1927282  1928736  +  1455  D-lactate dehydrogenase (cytochrome)  YP_509879  decreased coverage  0.00614579  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1961  CDS  NC_007802  1955009  1955734  +  726  methyltransferase type 12  YP_509903  decreased coverage  0.00015321  normal  0.48171  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_1962  CDS  NC_007802  1955731  1956477  +  747  hypothetical protein  YP_509904  decreased coverage  0.000465234  normal  0.472  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2054  CDS  NC_007802  2059214  2060224  +  1011  binding-protein-dependent transport systems inner membrane component  YP_509996  decreased coverage  0.000423079  normal  0.894594  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2126  CDS  NC_007802  2135159  2135992  +  834  FAD-binding 9, siderophore-interacting  YP_510068  decreased coverage  0.00704936  normal  0.417665  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2177  CDS  NC_007802  2185441  2186265  +  825  hypothetical protein  YP_510119  decreased coverage  0.00465003  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2327  CDS  NC_007802  2332003  2334483  +  2481  penicillin amidase  YP_510269  decreased coverage  0.00682213  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2453  CDS  NC_007802  2444739  2447057  -  2319  surface antigen (D15)  YP_510395  normal  1  decreased coverage  0.0002154  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2454  CDS  NC_007802  2447635  2448966  -  1332  peptidase RseP  YP_510396  normal  1  decreased coverage  0.000129388  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2477  CDS  NC_007802  2474210  2474728  +  519  xanthine-guanine phosphoribosyltransferase  YP_510419  decreased coverage  0.00627128  normal  0.0241876  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2493  CDS  NC_007802  2492090  2492563  +  474  disulphide bond formation protein DsbB  YP_510435  decreased coverage  0.00516878  normal  0.105082  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2524  CDS  NC_007802  2524061  2524747  +  687  hypothetical protein  YP_510466  decreased coverage  0.00176428  normal  0.309972  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2525  CDS  NC_007802  2524831  2525211  +  381  HesB/YadR/YfhF  YP_510467  decreased coverage  0.00201416  normal  0.319126  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2587  CDS  NC_007802  2596487  2597431  -  945  binding-protein-dependent transport systems inner membrane component  YP_510529  decreased coverage  0.000137508  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2604  CDS  NC_007802  2619584  2620747  +  1164  D-3-hydroxyaspartate aldolase  YP_510546  decreased coverage  0.00289104  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2605  CDS  NC_007802  2620872  2621837  +  966  ornithine cyclodeaminase  YP_510547  decreased coverage  0.00162792  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2646  CDS  NC_007802  2658905  2661700  -  2796  aconitate hydratase  YP_510588  normal  0.581556  decreased coverage  0.00838168  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2649  CDS  NC_007802  2663292  2664035  +  744  heme exporter protein CcmC  YP_510591  decreased coverage  0.00358111  normal  0.0120286  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2651  CDS  NC_007802  2664983  2665480  -  498  MarR family transcriptional regulator  YP_510593  decreased coverage  0.00357574  normal  0.0103699  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2654  CDS  NC_007802  2666365  2667567  +  1203  aspartate aminotransferase  YP_510596  normal  0.24242  decreased coverage  0.00639864  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2672  CDS  NC_007802  2682827  2683954  +  1128  hypothetical protein  YP_510614  decreased coverage  0.00279858  normal  0.129736  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2695  CDS  NC_007802  2706052  2706612  -  561  response regulator receiver domain-containing protein  YP_510637  decreased coverage  0.00269866  normal  0.78823  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2750  CDS  NC_007802  2765569  2767212  -  1644  cell division protein FtsZ  YP_510692  decreased coverage  0.000196977  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2783  CDS  NC_007802  2801095  2801802  +  708  hypothetical protein  YP_510725  decreased coverage  0.00277795  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2819  CDS  NC_007802  2832541  2834130  +  1590  extracellular solute-binding protein  YP_510761  decreased coverage  0.000112764  normal  0.172306  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2935  CDS  NC_007802  2958161  2958853  +  693  cob(I)yrinic acid a,c-diamide adenosyltransferase  YP_510877  decreased coverage  0.00529424  hitchhiker  0.00306227  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2940  CDS  NC_007802  2962798  2963703  +  906  LysR family transcriptional regulator  YP_510882  normal  0.0170064  decreased coverage  0.0000113665  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2941  CDS  NC_007802  2963700  2965016  -  1317  TRAP C4-dicarboxylate transport system permease DctM subunit  YP_510883  hitchhiker  0.00047152  decreased coverage  0.0000126431  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2942  CDS  NC_007802  2965029  2965553  -  525  hypothetical protein  YP_510884  hitchhiker  0.00000148294  decreased coverage  0.00000918436  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2943  CDS  NC_007802  2965816  2966892  +  1077  TRAP dicarboxylate transporter- DctP subunit  YP_510885  decreased coverage  0.00000177028  decreased coverage  0.0000105865  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2944  CDS  NC_007802  2966960  2967847  +  888  polysaccharide deacetylase  YP_510886  hitchhiker  0.000229991  decreased coverage  0.00000886209  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2945  CDS  NC_007802  2967847  2968380  +  534  cupin 2 protein  YP_510887  normal  0.0664771  decreased coverage  0.00000748463  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_2974  CDS  NC_007802  2991869  2992408  +  540  hypothetical protein  YP_510916  decreased coverage  0.000963506  normal  0.230267  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_3026  CDS  NC_007802  3046898  3048382  +  1485  hypothetical protein  YP_510968  decreased coverage  0.00788252  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_3109  CDS  NC_007802  3143503  3144273  +  771  hypothetical protein  YP_511051  decreased coverage  0.000000053036  normal  0.378457  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_3122  CDS  NC_007802  3164022  3164795  -  774  hypothetical protein  YP_511064  decreased coverage  0.00154433  normal  0.146068  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_3123  CDS  NC_007802  3164792  3165841  -  1050  Rieske (2Fe-2S) protein  YP_511065  decreased coverage  0.00337014  normal  0.164048  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_3308  CDS  NC_007802  3362689  3363207  -  519  CarD family transcriptional regulator  YP_511250  decreased coverage  0.0000000178714  normal  0.0560372  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_3319  CDS  NC_007802  3372677  3373333  +  657  glycosyl transferase family protein  YP_511261  decreased coverage  0.00928337  normal  0.175337  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_3432  CDS  NC_007802  3479802  3480827  +  1026  hypothetical protein  YP_511374  decreased coverage  0.000798174  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_3441  CDS  NC_007802  3486925  3488763  +  1839  hypothetical protein  YP_511383  decreased coverage  0.00864363  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_3505  CDS  NC_007802  3560763  3561200  +  438  MarR family transcriptional regulator  YP_511447  normal  1  decreased coverage  0.0000513952  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_3506  CDS  NC_007802  3561189  3562418  -  1230  hypothetical protein  YP_511448  normal  0.352048  decreased coverage  0.0000728934  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_3507  CDS  NC_007802  3562415  3563899  -  1485  aldehyde dehydrogenase  YP_511449  normal  0.190202  decreased coverage  0.0000753817  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_3508  CDS  NC_007802  3563906  3565396  -  1491  hypothetical protein  YP_511450  normal  0.0428197  decreased coverage  0.0000798932  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_3509  CDS  NC_007802  3565438  3565977  -  540  hypothetical protein  YP_511451  hitchhiker  0.00117042  decreased coverage  0.0000549427  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_3510  CDS  NC_007802  3566035  3566979  -  945  hypothetical protein  YP_511452  unclonable  0.00000000651854  decreased coverage  0.0000592213  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_3801  CDS  NC_007802  3886938  3887456  -  519  GCN5-related N-acetyltransferase  YP_511743  normal  0.54281  decreased coverage  0.000138892  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_3802  CDS  NC_007802  3887453  3888373  -  921  RpiR family transcriptional regulator  YP_511744  normal  0.0439738  decreased coverage  0.00014335  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_3803  CDS  NC_007802  3888386  3889336  +  951  N-acetylmuramic acid-6-phosphate etherase  YP_511745  hitchhiker  0.0010924  decreased coverage  0.000127342  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_3804  CDS  NC_007802  3889368  3890873  +  1506  extracellular solute-binding protein  YP_511746  decreased coverage  0.00000726853  hitchhiker  0.0000406829  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_4098  CDS  NC_007802  4206920  4208629  -  1710  extracellular solute-binding protein  YP_512040  decreased coverage  0.00991271  normal  0.791743  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_4226  CDS  NC_007801  10385  13387  +  3003  conjugal transfer relaxase TraA  YP_512166  decreased coverage  0.0036143  normal  1  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
Jann_R0034  misc_RNA  NC_007802  2957972  2958160  -  189      decreased coverage  0.00364064  hitchhiker  0.00265886  Jannaschia sp. CCS1  Bacteria 
 
 
-
 
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