75 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Csal_0028  CDS  NC_007963  34135  35727  -  1593  Na+/solute symporter  YP_572092  decreased coverage  0.00419856  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_0076  CDS  NC_007963  95608  96957  -  1350  permease for cytosine/purines, uracil, thiamine, allantoin  YP_572139  decreased coverage  0.00450378  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_0088  CDS  NC_007963  111183  112127  -  945  hypothetical protein  YP_572151  decreased coverage  0.000143801  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_0089  CDS  NC_007963  112276  113766  -  1491  Na+/solute symporter  YP_572152  decreased coverage  0.00000762337  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
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Csal_0105  CDS  NC_007963  129477  130463  +  987  alpha/beta hydrolase  YP_572168  decreased coverage  0.00875507  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_0287  CDS  NC_007963  324672  325832  -  1161  hypothetical protein  YP_572349  decreased coverage  0.000514859  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_0407  CDS  NC_007963  461260  462099  +  840  pantothenate kinase  YP_572468  decreased coverage  0.00000443662  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_0419  CDS  NC_007963  478004  479197  +  1194  elongation factor Tu  YP_572480  decreased coverage  0.00911087  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_0524  CDS  NC_007963  580418  580972  -  555  hypothetical protein  YP_572585  decreased coverage  0.000000440007  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_0527  CDS  NC_007963  585161  585844  +  684  twin-arginine translocation pathway signal  YP_572588  decreased coverage  0.00000232216  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_0579  CDS  NC_007963  644054  645007  +  954  acetyl-CoA carboxylase carboxyltransferase subunit alpha  YP_572640  decreased coverage  0.000618766  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_0626  CDS  NC_007963  703543  704787  +  1245  aspartate kinase  YP_572687  decreased coverage  0.00000147671  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_0627  CDS  NC_007963  705009  705206  +  198  carbon storage regulator, CsrA / carbon storage regulator, CsrA  YP_572688  decreased coverage  0.00000000917661  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_0628  CDS  NC_007963  706310  706783  -  474  hypothetical protein  YP_572689  decreased coverage  0.0000000506751  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_0694  CDS  NC_007963  777414  778736  +  1323  oxaloacetate decarboxylase  YP_572754  decreased coverage  0.00230113  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_0698  CDS  NC_007963  783711  784982  +  1272  cell division protein ZipA  YP_572758  decreased coverage  0.000137968  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_0774  CDS  NC_007963  865147  867861  +  2715  ATP-binding protein  YP_572830  decreased coverage  0.00601607  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_0918  CDS  NC_007963  1032549  1033856  +  1308  PpiC-type peptidyl-prolyl cis-trans isomerase  YP_572974  decreased coverage  0.00205446  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1121  CDS  NC_007963  1278388  1279917  -  1530  peptidase U34, dipeptidase  YP_573176  decreased coverage  0.0000424745  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1355  CDS  NC_007963  1552761  1553240  +  480  hypothetical protein  YP_573409  decreased coverage  0.0000000749221  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1382  CDS  NC_007963  1575535  1576284  +  750  hypothetical protein  YP_573436  decreased coverage  0.00237074  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1437  CDS  NC_007963  1626540  1626887  +  348  hypothetical protein  YP_573489  decreased coverage  0.0071721  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1544  CDS  NC_007963  1756234  1756701  +  468  hypothetical protein  YP_573596  decreased coverage  0.00441553  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1545  CDS  NC_007963  1756765  1758666  +  1902  peptidoglycan glycosyltransferase  YP_573597  decreased coverage  0.00213347  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1565  CDS  NC_007963  1781337  1781975  +  639  ErfK/YbiS/YcfS/YnhG  YP_573617  decreased coverage  0.00540082  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1566  CDS  NC_007963  1781945  1783108  -  1164  ErfK/YbiS/YcfS/YnhG  YP_573618  decreased coverage  0.00819943  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1577  CDS  NC_007963  1796170  1797561  +  1392  soluble pyridine nucleotide transhydrogenase  YP_573629  decreased coverage  0.00876863  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1602  CDS  NC_007963  1823065  1823298  +  234  acyl carrier protein  YP_573654  decreased coverage  0.00127335  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1621  CDS  NC_007963  1841318  1842148  -  831  exodeoxyribonuclease III  YP_573673  decreased coverage  0.000939978  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1640  CDS  NC_007963  1865593  1868244  +  2652  phosphoenolpyruvate carboxylase  YP_573692  decreased coverage  0.00188681  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1664  CDS  NC_007963  1892482  1894296  +  1815  membrane protein-like protein  YP_573716  decreased coverage  0.0012251  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1668  CDS  NC_007963  1898062  1898265  +  204  cold-shock DNA-binding protein family protein  YP_573720  decreased coverage  0.0000281076  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1713  CDS  NC_007963  1949292  1951487  +  2196  protein-tyrosine kinase  YP_573764  decreased coverage  0.000917303  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1732  CDS  NC_007963  1975267  1975734  -  468  tripartite ATP-independent periplasmic transporter DctQ  YP_573783  decreased coverage  0.00171017  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1733  CDS  NC_007963  1975829  1976815  -  987  TRAP dicarboxylate transporter, DctP subunit  YP_573784  decreased coverage  0.000308967  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1801  CDS  NC_007963  2048655  2048849  +  195  50S ribosomal protein L35  YP_573852  decreased coverage  0.00132404  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1802  CDS  NC_007963  2048948  2049301  +  354  50S ribosomal protein L20  YP_573853  decreased coverage  0.0021941  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1844  CDS  NC_007963  2100068  2101846  +  1779  aspartyl-tRNA synthetase  YP_573895  decreased coverage  0.00295429  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1872  CDS  NC_007963  2129035  2130084  -  1050  binding-protein-dependent transport systems inner membrane component  YP_573923  decreased coverage  0.00059192  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1877  CDS  NC_007963  2134894  2136165  +  1272  diaminobutyrate--2-oxoglutarate aminotransferase  YP_573928  decreased coverage  0.000384013  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1902  CDS  NC_007963  2160279  2161109  -  831  binding-protein-dependent transport systems inner membrane component  YP_573953  decreased coverage  0.00849188  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_1989  CDS  NC_007963  2246371  2248041  -  1671  methyl-accepting chemotaxis sensory transducer  YP_574039  decreased coverage  0.00286784  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_2027  CDS  NC_007963  2291857  2292468  -  612  transcriptional activator FlhC  YP_574077  decreased coverage  0.000461125  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_2048  CDS  NC_007963  2312179  2313042  +  864  methenyltetrahydrofolate cyclohydrolase  YP_574098  decreased coverage  0.0000169412  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_2102  CDS  NC_007963  2370500  2371327  +  828  lipoprotein YaeC  YP_574152  decreased coverage  0.0000812987  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_2133  CDS  NC_007963  2400940  2402754  +  1815  excinuclease ABC subunit C  YP_574183  decreased coverage  0.00985622  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_2154  CDS  NC_007963  2423631  2424815  +  1185  tetratricopeptide repeat protein  YP_574204  decreased coverage  0.00078802  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_2163  CDS  NC_007963  2431813  2433492  -  1680  30S ribosomal protein S1  YP_574213  decreased coverage  0.0054934  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_2164  CDS  NC_007963  2433687  2434385  -  699  cytidylate kinase  YP_574214  decreased coverage  0.00199731  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_2315  CDS  NC_007963  2601496  2602773  -  1278  seryl-tRNA synthetase  YP_574364  decreased coverage  0.00701941  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_2317  CDS  NC_007963  2606338  2606538  +  201  hypothetical protein  YP_574366  decreased coverage  0.00433359  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_2368  CDS  NC_007963  2657470  2658144  -  675  hypothetical protein  YP_574416  decreased coverage  0.00330023  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_2369  CDS  NC_007963  2658141  2659169  -  1029  cobyrinic acid a,c-diamide synthase  YP_574417  decreased coverage  0.000130755  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_2504  CDS  NC_007963  2812062  2812418  -  357  hypothetical protein  YP_574550  decreased coverage  0.000000232965  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_2645  CDS  NC_007963  2955810  2957864  +  2055  choline transport protein BetT  YP_574691  decreased coverage  0.00290709  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_2656  CDS  NC_007963  2973239  2973745  -  507  twin-arginine translocation pathway signal  YP_574702  decreased coverage  0.00182298  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_2945  CDS  NC_007963  3282990  3284054  +  1065  ABC transporter related  YP_574989  decreased coverage  0.00675888  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_2994  CDS  NC_007963  3331546  3331857  -  312  transcriptional regulator BolA  YP_575038  decreased coverage  0.00410783  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_3016  CDS  NC_007963  3357111  3357362  -  252  SSU ribosomal protein S16P  YP_575059  decreased coverage  0.00108733  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_3018  CDS  NC_007963  3359140  3359940  +  801  cytochrome c assembly protein  YP_575061  decreased coverage  0.00647598  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_3019  CDS  NC_007963  3360019  3361302  +  1284  hypothetical protein  YP_575062  decreased coverage  0.00496912  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_3023  CDS  NC_007963  3364702  3367527  +  2826  peptidase M16-like protein  YP_575066  decreased coverage  0.00252323  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_3049  CDS  NC_007963  3398271  3398528  +  258  hypothetical protein  YP_575092  decreased coverage  0.00000119575  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_3150  CDS  NC_007963  3505877  3507052  -  1176  hypothetical protein  YP_575193  decreased coverage  0.0000826288  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_R0006  tRNA  NC_007963  462206  462289  +  84  tRNA-Tyr    decreased coverage  0.000000157538  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_R0019  tRNA  NC_007963  584792  584867  +  76  tRNA-Thr    decreased coverage  0.000000126539  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_R0021  tRNA  NC_007963  705541  705617  +  77  tRNA-Arg    decreased coverage  0.0000000063734  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_R0022  tRNA  NC_007963  705704  705780  +  77  tRNA-Arg    decreased coverage  0.00000000656086  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_R0023  tRNA  NC_007963  951832  951906  +  75  tRNA-Lys    decreased coverage  0.000000728017  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_R0033  tRNA  NC_007963  997838  997924  -  87  tRNA-Leu    decreased coverage  0.000241168  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_R0040  tRNA  NC_007963  1548665  1548740  +  76  tRNA-Glu    decreased coverage  0.00000000578854  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_R0041  tRNA  NC_007963  1548764  1548838  +  75  tRNA-Gly    decreased coverage  0.00000000613233  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_R0052  tRNA  NC_007963  1733361  1733437  -  77  tRNA-Met    decreased coverage  0.00000386072  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_R0066  tRNA  NC_007963  2311895  2311971  -  77  tRNA-Pro    decreased coverage  0.000000715268  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
-
 
Csal_R0079  rRNA  NC_007963  2719591  2721064  -  1474  16S ribosomal RNA    decreased coverage  0.00000533753  n/a    Chromohalobacter salexigens DSM 3043  Bacteria 
 
 
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