59 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Clim_0013  CDS  NC_010803  15393  16328  +  936  preprotein translocase subunit SecF  YP_001942100  decreased coverage  0.00000001158  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0103  CDS  NC_010803  108050  110536  +  2487  DNA gyrase, A subunit  YP_001942188  decreased coverage  0.0000000929696  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0149  CDS  NC_010803  168178  168441  +  264  30S ribosomal protein S18  YP_001942227  decreased coverage  0.00000000094282  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0182  CDS  NC_010803  199470  201665  +  2196  photosystem P840 reaction center, large subunit  YP_001942260  decreased coverage  0.000000010763  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0190  CDS  NC_010803  210932  211123  +  192  preprotein translocase subunit SecE  YP_001942268  decreased coverage  0.000000126022  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0191  CDS  NC_010803  211146  211721  +  576  NusG antitermination factor  YP_001942269  decreased coverage  0.0000000382089  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0242  CDS  NC_010803  271283  273475  -  2193  penicillin-binding protein, 1A family  YP_001942316  decreased coverage  0.00000113999  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0250  CDS  NC_010803  281526  282173  -  648  surface antigen msp4 family protein  YP_001942324  decreased coverage  0.00000237774  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0261  CDS  NC_010803  293640  294293  +  654  protein-L-isoaspartate O-methyltransferase  YP_001942335  decreased coverage  0.00000651087  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0303  CDS  NC_010803  340039  341004  +  966  riboflavin biosynthesis protein RibF  YP_001942376  decreased coverage  0.00000000735935  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0422  CDS  NC_010803  468233  468682  +  450  50S ribosomal protein L13  YP_001942494  decreased coverage  0.00538272  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0497  CDS  NC_010803  564194  564481  +  288  co-chaperonin GroES  YP_001942569  decreased coverage  0.000000000000741059  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0533  CDS  NC_010803  601431  602291  -  861  rod shape-determining protein MreC  YP_001942604  decreased coverage  0.00550121  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0540  CDS  NC_010803  610317  611042  -  726  ABC transporter related  YP_001942611  decreased coverage  0.00247085  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0570  CDS  NC_010803  642035  642247  +  213  hypothetical protein  YP_001942640  decreased coverage  0.00871665  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0645  CDS  NC_010803  721160  721924  +  765  Type II site-specific deoxyribonuclease  YP_001942711  decreased coverage  0.00000000618072  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0908  CDS  NC_010803  993309  993833  +  525  hypothetical protein  YP_001942966  decreased coverage  0.000000000000542792  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0909  CDS  NC_010803  993954  994103  +  150  hypothetical protein  YP_001942967  decreased coverage  0.00000000000133445  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_0971  CDS  NC_010803  1063752  1064417  -  666  hypothetical protein  YP_001943026  decreased coverage  0.0000000000997289  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1004  CDS  NC_010803  1095644  1096738  +  1095  transport system permease protein  YP_001943059  decreased coverage  0.00447808  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1064  CDS  NC_010803  1166075  1168060  +  1986  TonB-dependent receptor  YP_001943112  decreased coverage  0.00188221  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1095  CDS  NC_010803  1198273  1198788  -  516  hypothetical protein  YP_001943143  decreased coverage  0.00000000000152193  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1259  CDS  NC_010803  1359776  1361917  -  2142  polyphosphate kinase  YP_001943305  decreased coverage  0.00202694  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1409  CDS  NC_010803  1514571  1515425  -  855  hypothetical protein  YP_001943448  decreased coverage  0.00000000207468  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1410  CDS  NC_010803  1515407  1516111  -  705  hypothetical protein  YP_001943449  decreased coverage  0.0000000414925  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1554  CDS  NC_010803  1674676  1674858  +  183  50S ribosomal protein L33  YP_001943582  decreased coverage  0.00000000000411088  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1572  CDS  NC_010803  1691791  1693122  -  1332  hypothetical protein  YP_001943598  decreased coverage  0.0000000183741  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1573  CDS  NC_010803  1693109  1693783  -  675  hypothetical protein  YP_001943599  decreased coverage  0.0000000000536075  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1591  CDS  NC_010803  1712380  1713519  +  1140  queuine tRNA-ribosyltransferase  YP_001943615  decreased coverage  0.00100827  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1611  CDS  NC_010803  1742784  1744091  -  1308  hypothetical protein  YP_001943634  decreased coverage  0.000000179592  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1660  CDS  NC_010803  1797502  1798215  -  714  hypothetical protein  YP_001943682  decreased coverage  0.00000295507  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1674  CDS  NC_010803  1840421  1841911  -  1491  anthranilate synthase component I  YP_001943695  decreased coverage  0.00452514  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1685  CDS  NC_010803  1853000  1853713  +  714  ABC transporter related  YP_001943706  decreased coverage  0.000000384234  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1686  CDS  NC_010803  1853679  1855043  +  1365  major facilitator superfamily MFS_1  YP_001943707  decreased coverage  0.000674894  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1771  CDS  NC_010803  1946440  1947933  +  1494  amidophosphoribosyltransferase  YP_001943789  decreased coverage  0.0000657758  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1780  CDS  NC_010803  1957520  1958098  -  579  dTDP-4-dehydrorhamnose 3,5-epimerase  YP_001943798  decreased coverage  0.0000189837  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1787  CDS  NC_010803  1965038  1965388  -  351  hydrogenase nickel insertion protein HypA  YP_001943805  decreased coverage  0.00000000000697266  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1788  CDS  NC_010803  1965516  1966442  +  927  aspartate carbamoyltransferase catalytic subunit  YP_001943806  decreased coverage  0.000000000240723  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1789  CDS  NC_010803  1966453  1967370  +  918  hypothetical protein  YP_001943807  decreased coverage  0.000000000245349  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1790  CDS  NC_010803  1967444  1967950  -  507  NUDIX hydrolase  YP_001943808  decreased coverage  0.0000000000145412  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1791  CDS  NC_010803  1968133  1969383  +  1251  coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein  YP_001943809  decreased coverage  0.000000000803312  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1858  CDS  NC_010803  2041759  2042394  +  636  hypothetical protein  YP_001943876  decreased coverage  0.000000000275455  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_1983  CDS  NC_010803  2200832  2201284  +  453  cytochrome c, putative  YP_001943994  decreased coverage  0.000836955  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_2072  CDS  NC_010803  2284267  2284998  -  732  protein of unknown function DUF541  YP_001944080  decreased coverage  0.00000026389  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_2073  CDS  NC_010803  2285022  2285678  -  657  hypothetical protein  YP_001944081  decreased coverage  0.000000000612499  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_2079  CDS  NC_010803  2293451  2294704  -  1254  domain of unknown function DUF1745  YP_001944087  decreased coverage  0.00286991  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_2186  CDS  NC_010803  2424323  2426971  -  2649  hypothetical protein  YP_001944189  decreased coverage  0.000000183684  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
-
 
Clim_2205  CDS  NC_010803  2444547  2444924  -  378  30S ribosomal protein S13  YP_001944208  decreased coverage  0.000000000000397378  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
-
 
Clim_2206  CDS  NC_010803  2444960  2445076  -  117  50S ribosomal protein L36  YP_001944209  decreased coverage  0.00000000000124875  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_2207  CDS  NC_010803  2445190  2445408  -  219  translation initiation factor IF-1  YP_001944210  decreased coverage  0.00000000000268658  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_2208  CDS  NC_010803  2445448  2446245  -  798  methionine aminopeptidase, type I  YP_001944211  decreased coverage  0.0000000000857488  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_2225  CDS  NC_010803  2454278  2454574  -  297  30S ribosomal protein S19  YP_001944228  decreased coverage  0.000000000000482989  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_2226  CDS  NC_010803  2454608  2455402  -  795  50S ribosomal protein L2  YP_001944229  decreased coverage  0.00000000000549007  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_2401  CDS  NC_010803  2632879  2633445  +  567  4Fe-4S ferredoxin iron-sulfur binding domain protein  YP_001944401  decreased coverage  0.000101502  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_2505  CDS  NC_010803  2744302  2745408  -  1107  phospho-N-acetylmuramoyl-pentapeptide- transferase  YP_001944502  decreased coverage  0.000000106205  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_R0014  tRNA  NC_010803  210522  210594  +  73  tRNA-Thr    decreased coverage  0.0000000757854  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_R0015  tRNA  NC_010803  210606  210688  +  83  tRNA-Tyr    decreased coverage  0.0000000839238  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_R0016  tRNA  NC_010803  210715  210787  +  73  tRNA-Thr    decreased coverage  0.0000000825993  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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Clim_R0017  tRNA  NC_010803  210812  210884  +  73  tRNA-Trp    decreased coverage  0.0000000751689  n/a    Chlorobium limicola DSM 245  Bacteria 
 
 
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