116 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
CPR_0142  CDS  NC_008262  173401  174294  -  894  LysR family malolactic regulator  YP_697479  decreased coverage  0.000010919  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0195  CDS  NC_008262  242461  244836  -  2376  sensory box histidine kinase  YP_697530  decreased coverage  0.00184929  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0443  CDS  NC_008262  528996  529319  +  324  hypothetical protein  YP_697772  decreased coverage  0.00458611  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0454  CDS  NC_008262  541348  542016  +  669  glycosyltransferase, putative  YP_697783  decreased coverage  0.000000102874  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0462  CDS  NC_008262  548373  549548  +  1176  polysaccharide polymerase, putative  YP_697791  decreased coverage  0.000183254  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0463  CDS  NC_008262  549505  550239  +  735  hypothetical protein  YP_697792  decreased coverage  0.00000202427  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0591  CDS  NC_008262  704680  706401  +  1722  cell wall binding repeat-containing protein/zinc carboxypeptidase family protein  YP_697918  decreased coverage  0.00000159659  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0593  CDS  NC_008262  709292  710950  +  1659  cell wall binding repeat-containing protein  YP_697920  decreased coverage  0.000201841  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0662  CDS  NC_008262  781006  781368  +  363  hypothetical protein  YP_697989  decreased coverage  0.000750975  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0733  CDS  NC_008262  858073  859386  +  1314  hypothetical protein  YP_698059  decreased coverage  0.00594005  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0734  CDS  NC_008262  859999  860337  +  339  hypothetical protein  YP_698060  decreased coverage  0.00996536  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0735  CDS  NC_008262  860439  861890  -  1452  cardiolipin synthetase  YP_698061  decreased coverage  0.00981982  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0753  CDS  NC_008262  884376  885074  +  699  scdA protein, putative  YP_698079  decreased coverage  0.00120988  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0754  CDS  NC_008262  885227  885937  +  711  Crp/FNR family transcriptional regulator  YP_698080  decreased coverage  0.0000212493  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0763  CDS  NC_008262  891261  892787  +  1527  hypothetical protein  YP_698089  decreased coverage  0.00000104184  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0812  CDS  NC_008262  937577  938431  +  855  hypothetical protein  YP_698137  decreased coverage  0.000113907  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0833  CDS  NC_008262  962323  963891  +  1569  alpha-clostripain  YP_698158  decreased coverage  0.00458898  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0845  CDS  NC_008262  976605  977864  +  1260  GntP family permease  YP_698170  decreased coverage  0.00379452  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0858  CDS  NC_008262  997729  998268  +  540  acetyltransferase  YP_698183  decreased coverage  0.000408067  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0866  CDS  NC_008262  1003473  1004099  +  627  DedA family protein  YP_698191  decreased coverage  0.0000043469  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0868  CDS  NC_008262  1005492  1007129  +  1638  EAL domain-containing protein  YP_698193  decreased coverage  0.0000558008  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0879  CDS  NC_008262  1016155  1016976  -  822  CAAX amino terminal protease family protein  YP_698204  decreased coverage  0.00516556  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0904  CDS  NC_008262  1036071  1037390  +  1320  ABC transporter, periplasmic substrate-binding protein, putative  YP_698228  decreased coverage  0.00221898  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0915  CDS  NC_008262  1046570  1047130  +  561  CRISPR-associated Cas1 family protein  YP_698239  decreased coverage  0.00714947  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0923  CDS  NC_008262  1059069  1059302  -  234  hypothetical protein  YP_698247  decreased coverage  0.00000000601668  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0924  CDS  NC_008262  1059521  1059763  -  243  hypothetical protein  YP_698248  decreased coverage  0.00000000711091  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0925  CDS  NC_008262  1059785  1059958  -  174  hypothetical protein  YP_698249  decreased coverage  0.00000000509221  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0926  CDS  NC_008262  1060394  1060951  +  558  hypothetical protein  YP_698250  decreased coverage  0.0000000480177  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0931  CDS  NC_008262  1064992  1066617  +  1626  solute-binding family 3 protein  YP_698255  decreased coverage  0.000314501  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0944  CDS  NC_008262  1076824  1077297  +  474  hypothetical protein  YP_698268  decreased coverage  0.00820711  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0945  CDS  NC_008262  1077339  1077524  +  186  hypothetical protein  YP_698269  decreased coverage  0.000617268  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0949  CDS  NC_008262  1081736  1081930  +  195  chitinase B  YP_698273  decreased coverage  0.00782065  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0951  CDS  NC_008262  1082505  1082684  -  180  hypothetical protein  YP_698275  decreased coverage  0.00658774  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0961  CDS  NC_008262  1093378  1093842  +  465  hypothetical protein  YP_698284  decreased coverage  0.00000219081  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0963  CDS  NC_008262  1094586  1095263  +  678  hypothetical protein  YP_698286  decreased coverage  0.0000205634  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0975  CDS  NC_008262  1111015  1111503  -  489  acetyltransferase  YP_698298  decreased coverage  0.0000033861  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0982  CDS  NC_008262  1119376  1120398  -  1023  ISCpe7, transposase  YP_698305  decreased coverage  0.0000545032  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0994  CDS  NC_008262  1135044  1135688  -  645  DedA family protein  YP_698317  decreased coverage  0.00874601  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_0995  CDS  NC_008262  1136021  1136887  +  867  hypothetical protein  YP_698318  decreased coverage  0.00740931  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1022  CDS  NC_008262  1164512  1165264  +  753  hypothetical protein  YP_698345  decreased coverage  0.00191914  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1037  CDS  NC_008262  1181591  1182586  +  996  hypothetical protein  YP_698360  decreased coverage  0.0000558415  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1038  CDS  NC_008262  1182859  1184313  -  1455  Na+/H+ antiporter, putative  YP_698361  decreased coverage  0.0000729524  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1042  CDS  NC_008262  1187247  1189187  +  1941  translation elongation factor G, putative  YP_698365  decreased coverage  0.0000207187  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1047  CDS  NC_008262  1193633  1194145  -  513  ferritin family protein  YP_698369  decreased coverage  0.00000219081  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1096  CDS  NC_008262  1241742  1242299  +  558  GTP cyclohydrolase I  YP_698418  decreased coverage  0.00097331  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1097  CDS  NC_008262  1242324  1242797  +  474  HDIG/HD domain-containing protein  YP_698419  decreased coverage  0.0043379  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1099  CDS  NC_008262  1243632  1244453  +  822  dihydroneopterin aldolase/ 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase  YP_698421  decreased coverage  0.00662254  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1100  CDS  NC_008262  1244524  1245003  -  480  putative lipoprotein  YP_698422  decreased coverage  0.00534188  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1103  CDS  NC_008262  1245888  1246970  +  1083  pyruvate kinase barrel domain-containing protein  YP_698424  decreased coverage  0.00167331  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1122  CDS  NC_008262  1266746  1267912  +  1167  hypothetical protein  YP_698444  decreased coverage  0.003942  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1158  CDS  NC_008262  1304379  1304888  +  510  hypothetical protein  YP_698480  decreased coverage  0.00594383  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1209  CDS  NC_008262  1355853  1357115  +  1263  vancomycin b-type resistance protein vanW, putative  YP_698531  decreased coverage  0.00000880463  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1224  CDS  NC_008262  1375296  1376270  -  975  pseudouridylate synthase  YP_698546  decreased coverage  0.00465403  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1258  CDS  NC_008262  1412229  1414784  -  2556  hypothetical protein  YP_698580  decreased coverage  0.0075337  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1259  CDS  NC_008262  1414934  1415857  -  924  hypothetical protein  YP_698581  decreased coverage  0.00000161457  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1280  CDS  NC_008262  1447234  1447983  +  750  transcriptional regulator  YP_698602  decreased coverage  0.00000081725  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1298  CDS  NC_008262  1467633  1469171  -  1539  phosphoglyceromutase  YP_698620  decreased coverage  0.00238199  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1340  CDS  NC_008262  1511217  1512230  -  1014  LacI family transcription regulator  YP_698660  decreased coverage  0.00000460933  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1341  CDS  NC_008262  1512448  1513512  +  1065  d-galactose-binding periplasmic protein precursor  YP_698661  decreased coverage  0.0000193689  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1356  CDS  NC_008262  1529251  1529736  -  486  ybaK/ebsC protein  YP_698676  decreased coverage  0.00173308  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1361  CDS  NC_008262  1532801  1533427  +  627  TrkA domain-containing protein  YP_698681  decreased coverage  0.00515151  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1376  CDS  NC_008262  1547838  1548434  -  597  hypothetical protein  YP_698695  decreased coverage  0.000306259  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1377  CDS  NC_008262  1548532  1549455  +  924  hypothetical protein  YP_698696  decreased coverage  0.000291339  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1430  CDS  NC_008262  1609444  1610064  -  621  hypothetical protein  YP_698749  decreased coverage  0.0000684885  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1451  CDS  NC_008262  1633454  1634101  -  648  hypothetical protein  YP_698770  decreased coverage  0.00428647  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1481  CDS  NC_008262  1656114  1657439  -  1326  sensor histidine kinase VirS  YP_698800  decreased coverage  0.00000161061  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1508  CDS  NC_008262  1687527  1688864  +  1338  putative lipoprotein  YP_698826  decreased coverage  0.00254139  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1509  CDS  NC_008262  1688931  1689347  -  417  hypothetical protein  YP_698827  decreased coverage  0.000698422  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1514  CDS  NC_008262  1694779  1695405  -  627  hypothetical protein  YP_698832  decreased coverage  0.00000468543  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1523  CDS  NC_008262  1710226  1710762  +  537  signal peptidase I  YP_698841  decreased coverage  0.000512014  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1553  misc_feature  NC_008262  1741995  1742816  -  822      decreased coverage  0.00072525  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1576  CDS  NC_008262  1767402  1767710  -  309  hypothetical protein  YP_698892  decreased coverage  0.0000000332656  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1577  CDS  NC_008262  1767755  1768198  -  444  methionine sulfoxide reductase B  YP_698893  decreased coverage  0.0000000632227  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1603  CDS  NC_008262  1794221  1795153  -  933  ribokinase  YP_698919  decreased coverage  0.0000677641  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1630  CDS  NC_008262  1820648  1820899  +  252  feoA protein  YP_698945  decreased coverage  0.000000000794157  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1686  CDS  NC_008262  1880512  1880850  -  339  putative DNA-binding protein  YP_699001  decreased coverage  0.000000027159  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1691  CDS  NC_008262  1887580  1887810  -  231  acyl carrier protein  YP_699006  decreased coverage  0.00116185  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1692  CDS  NC_008262  1887887  1888906  -  1020  putative glycerol-3-phosphate acyltransferase PlsX  YP_699007  decreased coverage  0.00846785  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1728  CDS  NC_008262  1925398  1927113  -  1716  sensory box histidine kinase  YP_699043  decreased coverage  0.00635742  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1735  CDS  NC_008262  1931700  1932845  -  1146  cell division protein FtsZ  YP_699050  decreased coverage  0.0000316509  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1755  CDS  NC_008262  1953558  1954754  -  1197  cysteine desulfurase  YP_699070  decreased coverage  0.00778501  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1756  CDS  NC_008262  1954747  1955208  -  462  hypothetical protein  YP_699071  decreased coverage  0.00118486  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1790  CDS  NC_008262  1989041  1990243  -  1203  exodeoxyribonuclease VII large subunit  YP_699105  decreased coverage  0.00554465  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1808  CDS  NC_008262  2000443  2000814  -  372  hypothetical protein  YP_699123  decreased coverage  0.00659836  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1839  CDS  NC_008262  2029884  2030600  -  717  teichoic acid biosynthesis protein A  YP_699153  decreased coverage  0.0000000116164  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1858  CDS  NC_008262  2058156  2058677  -  522  translation initiation factor IF-3  YP_699172  decreased coverage  0.0000000644129  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1878  CDS  NC_008262  2072556  2073341  -  786  polysaccharide deacetylase family protein  YP_699188  decreased coverage  0.0000000117322  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1931  CDS  NC_008262  2136442  2137842  +  1401  sodium/alanine symporter family protein  YP_699241  decreased coverage  0.000563858  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1954  CDS  NC_008262  2158913  2160787  -  1875  sensor histidine kinase  YP_699264  decreased coverage  0.000131402  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1975  CDS  NC_008262  2181235  2182335  -  1101  RNA polymerase sigma factor RpoD  YP_699284  decreased coverage  0.0000064083  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_1976  CDS  NC_008262  2182362  2184149  -  1788  DNA primase  YP_699285  decreased coverage  0.00122543  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_2077  CDS  NC_008262  2303574  2304227  -  654  vncR, response regulator  YP_699386  decreased coverage  0.00119329  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_2097  CDS  NC_008262  2323301  2323612  -  312  50S ribosomal protein L21  YP_699406  decreased coverage  0.000000174433  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_2103  CDS  NC_008262  2329712  2330836  -  1125  cell cycle protein FtsW  YP_699412  decreased coverage  0.0000319192  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_2104  CDS  NC_008262  2330984  2331256  -  273  cell division topological specificity factor MinE  YP_699413  decreased coverage  0.000000684529  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_2106  CDS  NC_008262  2332093  2332728  -  636  septum formation inhibitor  YP_699415  decreased coverage  0.0000027013  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_2177  CDS  NC_008262  2402792  2404555  -  1764  HemK family modification methylase  YP_699477  decreased coverage  0.00000299232  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_2194  CDS  NC_008262  2423019  2424047  -  1029  spore coat protein, putative  YP_699494  decreased coverage  0.00168617  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_2232  tRNA  NC_008262  2451696  2451771  -  76  tRNA-Lys    decreased coverage  0.00000000210068  n/a    Clostridium perfringens SM101  Bacteria 
 
 
-
 
CPR_2233  tRNA  NC_008262  2451778  2451852  -  75  tRNA-Gln    decreased coverage  0.00000000181796  n/a    Clostridium perfringens SM101  Bacteria 
 
 
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