60 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
BBta_0338  CDS  NC_009485  346719  347501  +  783  putative oxidoreductase molybdopterin binding  YP_001236536  decreased coverage  0.0092485  normal  0.0273242  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_0536  CDS  NC_009485  531638  532666  +  1029  putative ABC transporter (substrate-binding protein)  YP_001236723  decreased coverage  0.00532956  normal  1  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_0588  CDS  NC_009485  593314  593574  -  261  hypothetical protein  YP_001236770  decreased coverage  0.00255696  normal  1  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_0768  CDS  NC_009485  789076  790284  -  1209  O-succinylhomoserine sulfhydrylase  YP_001236938  decreased coverage  0.00770297  hitchhiker  0.00215966  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_0771  CDS  NC_009485  795020  796477  +  1458  putative cation-driven multidrug efflux pump  YP_001236941  normal  1  decreased coverage  0.00132131  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_0772  CDS  NC_009485  796485  796886  -  402  hypothetical protein  YP_001236942  normal  1  decreased coverage  0.000821647  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_0773  CDS  NC_009485  796925  797284  -  360  hypothetical protein  YP_001236943  normal  1  decreased coverage  0.000812733  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_0774  CDS  NC_009485  797337  798173  -  837  AraC family transcriptional regulator  YP_001236944  normal  1  decreased coverage  0.000960474  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_0775  CDS  NC_009485  798250  798822  -  573  O-6-methylguanine-DNA methyltransferase  YP_001236945  normal  1  decreased coverage  0.000830655  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_0776  CDS  NC_009485  799027  799431  -  405  hypothetical protein  YP_001236946  normal  1  decreased coverage  0.000839757  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_1259  CDS  NC_009485  1339112  1340419  +  1308  putative D-amino-acid dehydrogenase, FAD dependent  YP_001237405  normal  1  decreased coverage  0.00889371  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_1493  CDS  NC_009485  1581317  1583419  +  2103  conjugal transfer coupling protein TraG  YP_001237618  decreased coverage  0.00200644  normal  0.246461  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_1494  CDS  NC_009485  1583429  1583863  +  435  CopG family protein  YP_001237619  decreased coverage  0.00276069  normal  0.69135  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_1569  CDS  NC_009485  1651044  1651574  -  531  hypothetical protein  YP_001237691  normal  0.592347  decreased coverage  0.00826206  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_1717  CDS  NC_009485  1791008  1791988  -  981  FMN adenylyltransferase / riboflavin kinase  YP_001237832  decreased coverage  0.00388898  normal  0.218182  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_1829  CDS  NC_009485  1896707  1897054  -  348  hypothetical protein  YP_001237938  decreased coverage  0.000709548  normal  0.28873  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_2496  CDS  NC_009485  2579568  2580290  -  723  hypothetical protein  YP_001238563  decreased coverage  0.00623497  normal  1  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_2864  CDS  NC_009485  2969904  2970785  +  882  phenylacetic acid degradation operon negative regulatory protein paaX  YP_001238897  decreased coverage  0.00499823  normal  0.0484276  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_3312  CDS  NC_009485  3469791  3470921  +  1131  hypothetical protein  YP_001239320  decreased coverage  0.00970462  normal  1  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_3420  CDS  NC_009485  3568430  3569023  +  594  cytochrome b561 family protein  YP_001239420  decreased coverage  0.00251628  normal  1  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_3589  CDS  NC_009485  3752220  3753878  +  1659  hypothetical protein  YP_001239584  normal  1  decreased coverage  0.0075093  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_3659  CDS  NC_009485  3823274  3824386  -  1113  putative ABC transporter (permease protein)  YP_001239646  decreased coverage  0.00759514  normal  1  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_4090  CDS  NC_009485  4287946  4288821  +  876  branched chain amino acid ABC transporter permease  YP_001240062  decreased coverage  0.00306357  normal  0.062323  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_4295  CDS  NC_009485  4499204  4500547  -  1344  hypothetical protein  YP_001240251  normal  0.33353  decreased coverage  0.00229611  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_4296  CDS  NC_009485  4500574  4501629  -  1056  putative branched-chain amino acid ABC transporter, permease protein  YP_001240252  normal  0.258747  decreased coverage  0.00201809  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_4297  CDS  NC_009485  4501633  4502523  -  891  putative branched-chain amino acid ABC transporter, permease protein  YP_001240253  normal  0.315349  decreased coverage  0.00178163  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_4627  CDS  NC_009485  4852482  4853357  -  876  putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase  YP_001240561  normal  0.951338  decreased coverage  0.00842858  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_4629  CDS  NC_009485  4855579  4856142  -  564  MerR family transcriptional regulator  YP_001240563  decreased coverage  0.00782953  normal  0.030329  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_4679  CDS  NC_009485  4905782  4906768  -  987  glutathione S-transferase  YP_001240613  decreased coverage  0.0018476  normal  0.811499  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_4960  CDS  NC_009485  5198565  5199053  +  489  putative insertion sequence transposase protein  YP_001240880  decreased coverage  0.00139484  normal  1  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_5086  CDS  NC_009485  5311951  5312643  -  693  50S ribosomal protein L1  YP_001240991  decreased coverage  0.00155922  normal  0.872957  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_5171  CDS  NC_009485  5398668  5399057  -  390  hypothetical protein  YP_001241070  decreased coverage  0.00743925  normal  0.173258  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_5201  CDS  NC_009485  5428454  5428813  -  360  hypothetical protein  YP_001241099  decreased coverage  0.00906516  normal  0.0896455  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_5265  CDS  NC_009485  5493912  5494616  -  705  putative glutathione transferase  YP_001241158  decreased coverage  0.0071298  normal  0.528332  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_5365  CDS  NC_009485  5592353  5592484  -  132  hypothetical protein  YP_001241247  normal  1  decreased coverage  0.00122051  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_5366  CDS  NC_009485  5592589  5593482  +  894  putative inner membrane transport protein of unknown function  YP_001241248  normal  1  decreased coverage  0.00165583  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_5623  CDS  NC_009485  5858938  5859900  +  963  hypothetical protein  YP_001241487  decreased coverage  0.0083696  normal  0.628731  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_5726  CDS  NC_009485  5975849  5976835  -  987  hypothetical protein  YP_001241584  decreased coverage  0.00555624  normal  1  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_5898  CDS  NC_009485  6122115  6122363  -  249  hypothetical protein  YP_001241746  decreased coverage  0.00590287  normal  1  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_5997  CDS  NC_009485  6210633  6212636  +  2004  putative NADH-dependent flavin oxidoreductase  YP_001241842  normal  1  decreased coverage  0.00579337  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_5998  CDS  NC_009485  6212673  6214094  +  1422  isopropylmalate isomerase large subunit  YP_001241843  normal  1  decreased coverage  0.00498287  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_5999  CDS  NC_009485  6214091  6214711  +  621  3-isopropylmalate dehydratase small subunit  YP_001241844  normal  1  decreased coverage  0.00648667  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_6000  CDS  NC_009485  6215324  6215575  +  252  hypothetical protein  YP_001241845  normal  0.374774  decreased coverage  0.00517739  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_6001    NC_009485  6214907  6215179  -  273      normal  1  decreased coverage  0.00539864  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_6004  CDS  NC_009485  6222874  6224010  -  1137  AcrB/AcrD/AcrF family mulitdrug efflux protein  YP_001241848  normal  1  decreased coverage  0.00823963  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_6006  CDS  NC_009485  6224506  6225366  -  861  hypothetical protein  YP_001241849  normal  1  decreased coverage  0.00787853  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_6010  CDS  NC_009485  6231247  6232167  +  921  copper ABC transporter, ATP-binding protein NosF  YP_001241853  decreased coverage  0.00601626  normal  0.07018  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_6150  CDS  NC_009485  6378260  6379021  +  762  putative ABC-2 type transporter (permease protein)  YP_001241981  decreased coverage  0.00809538  normal  0.0938496  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_6208  CDS  NC_009485  6453408  6454289  -  882  putative phosphatidylserine decarboxylase  YP_001242037  decreased coverage  0.000986716  normal  1  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_6789  CDS  NC_009485  7070116  7071723  -  1608  Acetyl-coenzyme A synthetase  YP_001242585  decreased coverage  0.00873195  normal  0.0465133  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_6880  CDS  NC_009485  7206601  7208934  -  2334  diguanylate cyclase/phosphodiesterase  YP_001242673  normal  0.296113  decreased coverage  0.00757929  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_6894  CDS  NC_009485  7221211  7221657  +  447  hypothetical protein  YP_001242687  decreased coverage  0.00106592  normal  0.0638808  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_7247  CDS  NC_009485  7615025  7615885  -  861  ABC transporter permease  YP_001243030  decreased coverage  0.00669088  normal  0.643564  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_7248  CDS  NC_009485  7615903  7616571  -  669  ABC transporter ATP-binding protein  YP_001243031  decreased coverage  0.00375076  normal  0.359257  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_7607  CDS  NC_009485  7999220  8000074  +  855  hypothetical protein  YP_001243359  decreased coverage  0.00689527  normal  0.216662  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_7608  CDS  NC_009485  8000151  8000918  -  768  hypothetical protein  YP_001243360  decreased coverage  0.000430811  normal  0.301111  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_7619  CDS  NC_009485  8012060  8012200  -  141  50S ribosomal protein L32P  YP_001243371  decreased coverage  0.00560447  normal  0.375625  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_7759  CDS  NC_009485  8147393  8147908  +  516  hypothetical protein  YP_001243503  decreased coverage  0.00223773  normal  0.120642  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_7812  CDS  NC_009485  8197854  8198204  +  351  hypothetical protein  YP_001243545  decreased coverage  0.00845311  normal  1  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
BBta_7848  CDS  NC_009485  8235914  8237044  -  1131  putative ABC transporter (permease protein)  YP_001243579  decreased coverage  0.00792305  normal  0.174905  Bradyrhizobium sp. BTAi1  Bacteria 
 
 
-
 
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