67 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Rxyl_0083  CDS  NC_008148  86899  87915  +  1017  twin-arginine translocation pathway signal  YP_642876  decreased coverage  0.00000323423  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0192  CDS  NC_008148  193695  195083  +  1389  glycine cleavage T protein (aminomethyl transferase)  YP_642982  decreased coverage  0.000184996  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0208  CDS  NC_008148  209161  209850  +  690  GntR family transcriptional regulator  YP_642998  decreased coverage  0.00667385  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0209  CDS  NC_008148  209961  211313  +  1353  glycine cleavage T protein (aminomethyl transferase)  YP_642999  decreased coverage  0.000425405  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0237    NC_008148  243982  245066  +  1085      decreased coverage  0.0087407  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0371  CDS  NC_008148  397682  399316  +  1635  AMP-dependent synthetase and ligase  YP_643159  decreased coverage  0.00566676  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0389  CDS  NC_008148  417636  418268  -  633  hypothetical protein  YP_643176  decreased coverage  0.00614541  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0390  CDS  NC_008148  418416  419072  -  657  acyl-phosphate glycerol-3-phosphate acyltransferase  YP_643177  decreased coverage  0.00853574  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0470  CDS  NC_008148  506265  507587  +  1323  aminomethyltransferase  YP_643256  decreased coverage  0.0000173433  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0528  CDS  NC_008148  557803  558756  +  954  beta-lactamase-like protein  YP_643314  decreased coverage  0.000304282  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0647  CDS  NC_008148  681145  682233  +  1089  nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase  YP_643429  decreased coverage  0.00417708  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0650  CDS  NC_008148  683905  685005  +  1101  L-threonine O-3-phosphate decarboxylase  YP_643432  decreased coverage  0.000240372  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0651  CDS  NC_008148  685005  685625  +  621  phosphoglycerate mutase  YP_643433  decreased coverage  0.00089207  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0675  CDS  NC_008148  707968  708459  +  492  heat shock protein Hsp20  YP_643457  decreased coverage  0.000000558694  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0719  CDS  NC_008148  752585  753637  +  1053  NAD-dependent epimerase/dehydratase  YP_643501  decreased coverage  0.00305624  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0720  CDS  NC_008148  753634  754803  +  1170  alcohol dehydrogenase GroES-like protein  YP_643502  decreased coverage  0.00145968  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0832  CDS  NC_008148  867803  869236  +  1434  L-fucose isomerase  YP_643612  decreased coverage  0.0071314  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0872  CDS  NC_008148  912890  914515  +  1626  extracellular solute-binding protein  YP_643651  decreased coverage  0.00426332  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0914  CDS  NC_008148  954644  954961  +  318  septum formation initiator  YP_643693  decreased coverage  0.000205593  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0921  CDS  NC_008148  959618  960808  +  1191  pyruvate ferredoxin oxidoreductase, beta subunit  YP_643700  decreased coverage  0.00000413335  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0922  CDS  NC_008148  960882  961391  -  510  hypothetical protein  YP_643701  decreased coverage  0.000000202339  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0944  CDS  NC_008148  981834  983417  +  1584  thiamine pyrophosphate enzyme-like TPP-binding protein  YP_643723  decreased coverage  0.000374916  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0945  CDS  NC_008148  983441  984487  +  1047  LacI family transcription regulator  YP_643724  decreased coverage  0.0000657853  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_0960  CDS  NC_008148  997856  998917  +  1062  phospho-2-dehydro-3-deoxyheptonate aldolase  YP_643739  decreased coverage  0.00600689  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1006  CDS  NC_008148  1043603  1043911  +  309  hypothetical protein  YP_643784  decreased coverage  0.000000202339  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1007  CDS  NC_008148  1043912  1044280  +  369  hypothetical protein  YP_643785  decreased coverage  0.000000269149  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_1179  CDS  NC_008148  1204960  1206987  +  2028  hypothetical protein  YP_643957  decreased coverage  0.00516049  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1311  CDS  NC_008148  1335753  1336919  +  1167  tyrosyl-tRNA synthetase  YP_644087  decreased coverage  0.0000763452  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1359  CDS  NC_008148  1385783  1388431  +  2649  alanyl-tRNA synthetase  YP_644134  decreased coverage  0.00180995  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1383  CDS  NC_008148  1406647  1407894  +  1248  3-oxoacyl-[acyl-carrier-protein] synthase II  YP_644158  decreased coverage  0.00599775  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1418  CDS  NC_008148  1438068  1440128  +  2061  polynucleotide phosphorylase/polyadenylase  YP_644192  decreased coverage  0.00293848  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1438  CDS  NC_008148  1460882  1462195  -  1314  small GTP-binding protein domain-containing protein  YP_644212  decreased coverage  0.000421865  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_1462  CDS  NC_008148  1482631  1483158  -  528  hypothetical protein  YP_644236  decreased coverage  0.000805529  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_1480  CDS  NC_008148  1500747  1501664  -  918  aspartate carbamoyltransferase  YP_644254  decreased coverage  0.00533036  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_1498  CDS  NC_008148  1517460  1519130  -  1671  peptidoglycan glycosyltransferase  YP_644272  decreased coverage  0.00439152  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_1499  CDS  NC_008148  1519156  1519572  -  417  hypothetical protein  YP_644273  decreased coverage  0.00136966  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_1503  CDS  NC_008148  1523189  1524145  -  957  deoxyguanosinetriphosphate triphosphohydrolase-like protein  YP_644277  decreased coverage  0.00271106  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_1576  CDS  NC_008148  1601462  1602403  -  942  methylenetetrahydrofolate reductase  YP_644350  decreased coverage  0.00629171  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_1577  CDS  NC_008148  1602582  1602968  -  387  4-carboxymuconolactone decarboxylase  YP_644351  decreased coverage  0.00107459  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_1578  CDS  NC_008148  1602965  1603750  -  786  3-oxoadipate enol-lactonase  YP_644352  decreased coverage  0.000336054  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_1638  CDS  NC_008148  1663772  1665313  -  1542  F0F1 ATP synthase subunit beta  YP_644411  decreased coverage  0.0091219  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1670  CDS  NC_008148  1689693  1690730  +  1038  putative ammonia monooxygenase-like protein  YP_644443  decreased coverage  0.00625277  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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Rxyl_1689  CDS  NC_008148  1711679  1713589  -  1911  propionyl-CoA synthetase  YP_644461  decreased coverage  0.000127963  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_1705  CDS  NC_008148  1732032  1733126  -  1095  hypothetical protein  YP_644477  decreased coverage  0.00000437403  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_1706  CDS  NC_008148  1733302  1733646  -  345  hypothetical protein  YP_644478  decreased coverage  0.00000036824  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_1707  CDS  NC_008148  1733643  1734809  -  1167  butyryl-CoA dehydrogenase  YP_644479  decreased coverage  0.00000836039  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_1735  CDS  NC_008148  1764855  1765115  -  261  HPrNtr domain-containing protein  YP_644507  decreased coverage  0.00241683  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_1743  CDS  NC_008148  1772877  1773680  +  804  ABC-2 type transporter  YP_644515  decreased coverage  0.00781757  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_1897  CDS  NC_008148  1920763  1922100  -  1338  hypothetical protein  YP_644659  decreased coverage  0.000695658  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_1898  CDS  NC_008148  1922280  1923071  -  792  GntR family transcriptional regulator  YP_644660  decreased coverage  0.0000197182  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_1978  CDS  NC_008148  1999235  2000152  -  918  porphobilinogen deaminase  YP_644737  decreased coverage  0.000417837  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_1979  CDS  NC_008148  2000152  2001420  -  1269  glutamyl-tRNA reductase  YP_644738  decreased coverage  0.001246  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_2097  CDS  NC_008148  2124942  2125892  +  951  ornithine cyclodeaminase  YP_644853  decreased coverage  0.00174569  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_2155  CDS  NC_008148  2168011  2168628  -  618  50S ribosomal protein L3P  YP_644911  decreased coverage  0.00587716  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_2165  CDS  NC_008148  2181993  2182685  -  693  50S ribosomal protein L1P  YP_644921  decreased coverage  0.0086429  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_2171  CDS  NC_008148  2186026  2186535  -  510  hypothetical protein  YP_644927  decreased coverage  0.00990359  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_2256  CDS  NC_008148  2267216  2268502  -  1287  D-amino acid dehydrogenase small subunit  YP_644998  decreased coverage  0.0000681381  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_2391  CDS  NC_008148  2403132  2403461  -  330  hypothetical protein  YP_645131  decreased coverage  0.00527426  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_2406  CDS  NC_008148  2417786  2418799  +  1014  ATP-NAD/AcoX kinase  YP_645146  decreased coverage  0.00235302  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_2430  CDS  NC_008148  2446553  2446963  -  411  hypothetical protein  YP_645169  decreased coverage  0.00868022  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_2584  CDS  NC_008148  2603340  2604221  -  882  binding-protein-dependent transport systems inner membrane component  YP_645313  decreased coverage  0.00518726  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_2585  CDS  NC_008148  2604225  2605496  -  1272  glycine betaine/L-proline transport ATP binding subunit  YP_645314  decreased coverage  0.000379474  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_2725  CDS  NC_008148  2739840  2740778  +  939  formate dehydrogenase beta subunit  YP_645452  decreased coverage  0.00195593  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_2851  CDS  NC_008148  2857144  2857956  +  813  hydroxypyruvate isomerase  YP_645575  decreased coverage  0.000102215  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_2885  CDS  NC_008148  2885714  2886736  -  1023  N-acetyl-gamma-glutamyl-phosphate reductase  YP_645608  decreased coverage  0.000192641  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_2896  CDS  NC_008148  2897368  2899092  -  1725  2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase  YP_645619  decreased coverage  0.00112436  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
-
 
Rxyl_3028  CDS  NC_008148  3035094  3036782  -  1689  twin-arginine translocation pathway signal  YP_645750  decreased coverage  0.000374916  n/a    Rubrobacter xylanophilus DSM 9941  Bacteria 
 
 
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