101 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Mfla_0072  CDS  NC_007947  78463  78885  -  423  TraR/DksA family transcriptional regulator  YP_544184  decreased coverage  0.000000740961  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0170  CDS  NC_007947  183838  184539  +  702  TetR family transcriptional regulator  YP_544282  normal  1  decreased coverage  0.0000323068  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0171  CDS  NC_007947  184557  185549  +  993  hypothetical protein  YP_544283  normal  1  decreased coverage  0.0000347581  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0172  CDS  NC_007947  185681  186448  +  768  exodeoxyribonuclease III  YP_544284  normal  1  decreased coverage  0.0000298085  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0173  CDS  NC_007947  186597  187172  +  576  nitroreductase  YP_544285  normal  1  decreased coverage  0.0000256246  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0177  CDS  NC_007947  188837  190180  +  1344  deoxyguanosinetriphosphate triphosphohydrolase-like protein  YP_544289  normal  1  decreased coverage  0.0000429863  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0178  CDS  NC_007947  190219  190533  +  315  hypothetical protein  YP_544290  normal  1  decreased coverage  0.0000306154  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0179  CDS  NC_007947  190660  191349  +  690  aquaporin Z  YP_544291  normal  1  decreased coverage  0.0000341158  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0180  CDS  NC_007947  191414  192124  +  711  hypothetical protein  YP_544292  normal  1  decreased coverage  0.0000389961  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0181  CDS  NC_007947  192125  193396  -  1272  two component, sigma54 specific, Fis family transcriptional regulator  YP_544293  normal  1  decreased coverage  0.000041492  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0182  CDS  NC_007947  193393  195519  -  2127  multi-sensor signal transduction histidine kinase  YP_544294  normal  1  decreased coverage  0.0000583847  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0183  CDS  NC_007947  195526  196065  -  540  putative proline rich signal peptide protein  YP_544295  normal  1  decreased coverage  0.0000332053  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0312  CDS  NC_007947  307391  307627  -  237  50S ribosomal protein L28  YP_544424  decreased coverage  0.000118312  normal  0.224841  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0364  CDS  NC_007947  372551  374185  -  1635  chaperonin GroEL  YP_544476  unclonable  0.0000000174436  decreased coverage  0.00158274  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0432  CDS  NC_007947  440837  441550  -  714  two component transcriptional regulator  YP_544543  decreased coverage  0.00000322009  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0445  CDS  NC_007947  454926  455564  +  639  two component LuxR family transcriptional regulator  YP_544556  decreased coverage  0.0000000143028  normal  0.869605  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0446  CDS  NC_007947  455745  457433  +  1689  amino acid permease-associated region  YP_544557  decreased coverage  0.000000198962  normal  0.478578  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0470  CDS  NC_007947  483126  483578  -  453  17 kDa surface antigen  YP_544581  decreased coverage  0.0000215158  normal  0.945637  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0471  CDS  NC_007947  483590  484552  -  963  PfkB  YP_544582  decreased coverage  0.0000000138593  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0497  CDS  NC_007947  514953  515675  -  723  peptidylprolyl isomerase  YP_544608  decreased coverage  0.000000510816  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0498  CDS  NC_007947  515672  516886  -  1215  ErfK/YbiS/YcfS/YnhG  YP_544609  decreased coverage  0.0000000410538  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0518  CDS  NC_007947  540469  540885  +  417  GreA/GreB family elongation factor  YP_544629  decreased coverage  0.000000800329  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0519  CDS  NC_007947  541035  541742  -  708  putative integral membrane protein  YP_544630  decreased coverage  0.00000288688  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0575  CDS  NC_007947  598637  599392  +  756  hypothetical protein  YP_544686  decreased coverage  0.000185877  normal  0.010327  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0576  CDS  NC_007947  599463  601511  +  2049  putative site-specific recombinase, prophage insertion  YP_544687  decreased coverage  0.00000232694  normal  0.0137689  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0577  CDS  NC_007947  601520  601888  -  369  putative monovalent cation/H+ antiporter subunit G  YP_544688  hitchhiker  0.0035249  decreased coverage  0.0097103  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0578  CDS  NC_007947  601885  602154  -  270  putative monovalent cation/H+ antiporter subunit F  YP_544689  hitchhiker  0.00573992  decreased coverage  0.00947424  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0579  CDS  NC_007947  602151  602642  -  492  cation antiporter  YP_544690  normal  0.0216682  decreased coverage  0.00989196  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0620  CDS  NC_007947  650434  651444  -  1011  thiosulphate-binding protein  YP_544731  decreased coverage  0.000000295034  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0621  CDS  NC_007947  651472  651672  -  201  hypothetical protein  YP_544732  decreased coverage  0.00000000560407  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0622  CDS  NC_007947  651848  653383  -  1536  hypothetical protein  YP_544733  decreased coverage  0.000000219002  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0623  CDS  NC_007947  653671  654246  -  576  ATP:cob(I)alamin adenosyltransferase  YP_544734  decreased coverage  0.0000000253905  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0627  CDS  NC_007947  656666  657325  +  660  OmpW  YP_544738  decreased coverage  0.0000000035393  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0663  CDS  NC_007947  691189  692796  +  1608  phospholipase D/transphosphatidylase  YP_544774  decreased coverage  0.000324106  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0702  CDS  NC_007947  731848  732705  -  858  sigma 32 (RpoH)  YP_544811  decreased coverage  0.0000000179676  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0800  CDS  NC_007947  844430  845095  -  666  carbonic anhydrase  YP_544909  decreased coverage  0.0000181873  normal  0.299491  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0840  CDS  NC_007947  883418  883639  +  222  Lip  YP_544949  decreased coverage  0.000000000280312  normal  0.942032  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0855  CDS  NC_007947  895612  897228  -  1617  L-aspartate oxidase  YP_544964  decreased coverage  0.0000253959  normal  0.0344943  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0856  CDS  NC_007947  897423  898040  +  618  RNA polymerase sigma factor RpoE  YP_544965  decreased coverage  0.0000000380767  normal  0.0292756  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0884  CDS  NC_007947  923577  923984  +  408  hypothetical protein  YP_544993  normal  1  decreased coverage  0.0064704  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0927  CDS  NC_007947  974489  976198  -  1710  30S ribosomal protein S1  YP_545036  decreased coverage  0.00000030887  normal  0.340595  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0963  CDS  NC_007947  1009226  1009387  +  162  tRNA/rRNA methyltransferase (SpoU)  YP_545072  decreased coverage  0.0000000876713  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_0984  CDS  NC_007947  1026450  1026671  +  222  Lip  YP_545093  decreased coverage  0.00000000052987  normal  0.528944  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1000  CDS  NC_007947  1040455  1041072  +  618  RNA polymerase sigma factor RpoE  YP_545109  decreased coverage  0.00000000231343  normal  0.0259336  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1071  CDS  NC_007947  1117521  1119230  -  1710  30S ribosomal protein S1  YP_545180  decreased coverage  0.00000319804  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1072  CDS  NC_007947  1119321  1120001  -  681  cytidylate kinase  YP_545181  decreased coverage  0.00000000346962  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1132  CDS  NC_007947  1180268  1180834  -  567  hypothetical protein  YP_545241  decreased coverage  0.00000000566375  normal  0.27853  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1188  CDS  NC_007947  1236744  1236950  +  207  cold-shock DNA-binding protein family protein  YP_545297  decreased coverage  0.00084266  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1284  CDS  NC_007947  1361990  1363903  +  1914  hypothetical protein  YP_545393  decreased coverage  0.00000117205  decreased coverage  0.00000270892  Methylobacillus flagellatus KT  Bacteria 
 
 
 
Mfla_1316  CDS  NC_007947  1395770  1396201  +  432  hypothetical protein  YP_545425  decreased coverage  0.00633996  normal  0.405619  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1317  CDS  NC_007947  1396320  1396817  +  498  hypothetical protein  YP_545426  decreased coverage  0.008617  normal  0.417753  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1318  CDS  NC_007947  1396840  1397790  -  951  hypothetical protein  YP_545427  decreased coverage  0.00989696  normal  0.434798  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1373  CDS  NC_007947  1469790  1471397  -  1608  putative beta (1-6) glucan synthase  YP_545482  decreased coverage  0.0000927844  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1374  CDS  NC_007947  1471641  1472165  +  525  hypothetical protein  YP_545483  decreased coverage  0.00000101555  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1481  CDS  NC_007947  1587583  1588335  +  753  hydroxyacylglutathione hydrolase  YP_545590  decreased coverage  0.00263805  normal  0.131466  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1482  CDS  NC_007947  1588450  1590006  +  1557  lytic transglycosylase, catalytic  YP_545591  decreased coverage  0.00124104  normal  0.157348  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1503  CDS  NC_007947  1608538  1609770  -  1233  3-oxoacyl-[acyl-carrier-protein] synthase II  YP_545612  decreased coverage  0.00474127  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1529  CDS  NC_007947  1633609  1634484  -  876  elongation factor Ts  YP_545638  decreased coverage  0.0000439027  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1531  CDS  NC_007947  1635556  1636359  +  804  methionine aminopeptidase  YP_545640  decreased coverage  0.0000731877  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1557  CDS  NC_007947  1670533  1671351  -  819  binding-protein-dependent transport systems inner membrane component  YP_545666  decreased coverage  0.00127239  hitchhiker  0.00240392  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1644  CDS  NC_007947  1760452  1760934  -  483  TadE-like protein  YP_545753  decreased coverage  0.00000000291587  normal  0.422269  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1709  CDS  NC_007947  1829276  1830196  -  921  ornithine carbamoyltransferase  YP_545818  decreased coverage  0.00976675  hitchhiker  0.00312362  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1829  CDS  NC_007947  1969931  1970533  -  603  nitroreductase  YP_545937  decreased coverage  0.00202262  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_1995  CDS  NC_007947  2133187  2134707  -  1521  lactaldehyde dehydrogenase  YP_546103  decreased coverage  0.000000162834  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2003  CDS  NC_007947  2140680  2142587  -  1908  threonyl-tRNA synthetase  YP_546111  decreased coverage  0.00562927  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2095  CDS  NC_007947  2243456  2244721  -  1266  LolC/E family lipoprotein releasing system, transmembrane protein  YP_546203  decreased coverage  0.00459774  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2096  CDS  NC_007947  2244829  2245608  -  780  hypothetical protein  YP_546204  decreased coverage  0.0004226  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2140  CDS  NC_007947  2287889  2288092  -  204  cold-shock DNA-binding protein family protein  YP_546248  decreased coverage  0.000000000648799  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2205  CDS  NC_007947  2355973  2356347  +  375  DoxX  YP_546313  decreased coverage  0.00000990864  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2219  CDS  NC_007947  2369841  2370155  -  315  50S ribosomal protein L21P  YP_546327  decreased coverage  0.00000000152954  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2220  CDS  NC_007947  2370349  2371317  +  969  trans-hexaprenyltranstransferase  YP_546328  decreased coverage  0.0000000307661  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2226  CDS  NC_007947  2377527  2378135  +  609  dephospho-CoA kinase  YP_546334  decreased coverage  0.00000129832  normal  0.59943  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2263  CDS  NC_007947  2415360  2416523  -  1164  cell division protein FtsZ  YP_546371  decreased coverage  0.00432482  hitchhiker  0.000536698  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2290  CDS  NC_007947  2443752  2445011  +  1260  transcription termination factor Rho  YP_546398  decreased coverage  0.000000767102  normal  0.288713  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2291  CDS  NC_007947  2445138  2445380  +  243  50S ribosomal protein L31P  YP_546399  decreased coverage  0.000000143826  normal  0.236339  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2314  CDS  NC_007947  2468602  2470479  -  1878  Pyrrolo-quinoline quinone  YP_546422  decreased coverage  0.00000100555  unclonable  0.000000320672  Methylobacillus flagellatus KT  Bacteria 
 
 
 
Mfla_2319  CDS  NC_007947  2476316  2477287  +  972  rhodanese-like protein  YP_546427  decreased coverage  0.0000000129535  hitchhiker  0.00245583  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2320  CDS  NC_007947  2477350  2477703  -  354  hypothetical protein  YP_546428  decreased coverage  0.000000000476541  hitchhiker  0.00196121  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2321  CDS  NC_007947  2477857  2478768  +  912  LysR family transcriptional regulator  YP_546429  decreased coverage  0.00000000823941  hitchhiker  0.00226942  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2322  CDS  NC_007947  2479188  2481122  -  1935  sigma 70 (RpoD)  YP_546430  decreased coverage  0.000000648058  hitchhiker  0.00289182  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2337  CDS  NC_007947  2490943  2491767  -  825  tetratricopeptide region  YP_546445  decreased coverage  0.0000000123403  normal  0.0632651  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2338  CDS  NC_007947  2491771  2492313  -  543  OmpA/MotB  YP_546446  decreased coverage  0.000000002945  normal  0.0598095  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2339  CDS  NC_007947  2492453  2493700  -  1248  TolB-like protein  YP_546447  decreased coverage  0.000000041462  normal  0.0677463  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2363  CDS  NC_007947  2515651  2516070  -  420  hypothetical protein  YP_546471  decreased coverage  0.0000000100491  normal  0.704799  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2384  CDS  NC_007947  2536371  2538155  -  1785  aspartyl-tRNA synthetase  YP_546490  decreased coverage  0.0000393733  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2423  CDS  NC_007947  2595309  2596334  -  1026  hypothetical protein  YP_546529  decreased coverage  0.00313024  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2424  CDS  NC_007947  2596438  2596941  -  504  single-strand binding protein  YP_546530  decreased coverage  0.00208547  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2430  CDS  NC_007947  2603769  2604173  +  405  DoxX  YP_546536  decreased coverage  0.00251481  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2444  CDS  NC_007947  2622726  2623415  -  690  monofunctional biosynthetic peptidoglycan transglycosylase  YP_546550  decreased coverage  0.00000188115  normal  0.588429  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2445  CDS  NC_007947  2623412  2624224  -  813  shikimate dehydrogenase  YP_546551  decreased coverage  0.00000308711  normal  0.608428  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2446  CDS  NC_007947  2624233  2624748  -  516  rhodanese-like protein  YP_546552  decreased coverage  0.00000105937  normal  0.573259  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2491  CDS  NC_007947  2668717  2669760  +  1044  rod shape-determining protein MreB  YP_546597  decreased coverage  0.00448666  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2513  CDS  NC_007947  2693502  2693840  +  339  nitrogen regulatory protein P-II  YP_546619  decreased coverage  0.00284343  normal  1  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2667  CDS  NC_007947  2878214  2878690  +  477  LysM domain/BON superfamily protein  YP_546771  decreased coverage  0.00000146101  normal  0.333538  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2668  CDS  NC_007947  2878710  2878946  +  237  hypothetical protein  YP_546772  decreased coverage  0.0000000868697  normal  0.680862  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2669  CDS  NC_007947  2879032  2879820  -  789  short-chain dehydrogenase/reductase SDR  YP_546773  decreased coverage  0.00000526189  normal  0.715416  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2750  CDS  NC_007947  2960594  2961397  -  804  F0F1 ATP synthase subunit A  YP_546854  decreased coverage  0.0000190697  normal  0.437749  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_2751  CDS  NC_007947  2961407  2961793  -  387  ATP synthase protein I  YP_546855  decreased coverage  0.000000134012  normal  0.604082  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_R0014  tRNA  NC_007947  269738  269822  +  85  tRNA-Tyr    decreased coverage  0.000000000194257  hitchhiker  0.00490505  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
Mfla_R0039  tRNA  NC_007947  1662861  1662936  +  76  tRNA-Asn    decreased coverage  0.00000000227587  normal  0.0269838  Methylobacillus flagellatus KT  Bacteria 
 
 
-
 
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