39 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
MCA0209  CDS  NC_002977  213268  213588  +  321  nifZ protein  YP_112745  decreased coverage  0.00067923  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0210  CDS  NC_002977  213585  213854  +  270  nifZ protein, putative  YP_112746  decreased coverage  0.000650031  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0235  CDS  NC_002977  234506  234931  +  426  nitrogenase molybdenum-iron protein NifX  YP_112770  decreased coverage  0.00441901  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0299  CDS  NC_002977  293402  295261  +  1860  methanol dehydrogenase protein, large subunit, putative  YP_112833  decreased coverage  0.0065801  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0532  CDS  NC_002977  548430  548702  +  273  DNA-binding protein HU-beta  YP_113051  decreased coverage  0.00043104  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0580  CDS  NC_002977  609385  609819  -  435  hypothetical protein  YP_113097  decreased coverage  0.00000165262  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0605  CDS  NC_002977  639987  640307  -  321  putative lipoprotein  YP_113121  decreased coverage  0.000000761894  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0744  CDS  NC_002977  783272  783796  -  525  hypothetical protein  YP_113247  decreased coverage  0.00899887  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0791  CDS  NC_002977  833983  835224  +  1242  transporter, putative  YP_113292  decreased coverage  0.0000900832  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0792  CDS  NC_002977  835417  835626  +  210  cold shock protein  YP_113293  decreased coverage  0.000000912185  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0842  CDS  NC_002977  887514  888689  -  1176  GGDEF domain-containing protein  YP_113338  decreased coverage  0.000293697  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA0851  CDS  NC_002977  896534  898447  -  1914  cell division protein FtsH  YP_113346  decreased coverage  0.00696414  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1058  CDS  NC_002977  1108785  1109348  +  564  peptidyl-tRNA hydrolase  YP_113533  decreased coverage  0.0054523  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1065  CDS  NC_002977  1114073  1114450  +  378  50S ribosomal protein L7/L12  YP_113540  decreased coverage  0.00323205  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1171  CDS  NC_002977  1226496  1226954  +  459  hypothetical protein  YP_113637  decreased coverage  0.00000195908  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1216  CDS  NC_002977  1280734  1281258  +  525  hypothetical protein  YP_113680  decreased coverage  0.0000796661  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1218    NC_002977  1284084  1284308  -  225      decreased coverage  0.0042877  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1264  CDS  NC_002977  1346677  1348842  +  2166  peptide ABC transporter, periplasmic peptide-binding protein, putative  YP_113727  decreased coverage  0.00386395  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1411  CDS  NC_002977  1498297  1498584  -  288  integration host factor, beta subunit  YP_113869  decreased coverage  0.00234399  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1441  CDS  NC_002977  1533987  1534613  -  627  UbiE/COQ5 family methlytransferase  YP_113898  decreased coverage  0.000764793  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1444  CDS  NC_002977  1537097  1537540  +  444  hypothetical protein  YP_113901  decreased coverage  0.00000170053  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1455  CDS  NC_002977  1546705  1548219  -  1515  apolipoprotein N-acyltransferase  YP_113912  decreased coverage  0.0063424  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1481  CDS  NC_002977  1573769  1576426  +  2658  ribonuclease E  YP_113938  decreased coverage  0.00665357  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1495  CDS  NC_002977  1593489  1594496  +  1008  hypothetical protein  YP_113952  decreased coverage  0.00771781  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1524  CDS  NC_002977  1626150  1626599  +  450  hypothetical protein  YP_113980  decreased coverage  0.00128294  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1559  CDS  NC_002977  1659314  1659940  -  627  hypothetical protein  YP_114013  decreased coverage  0.00538046  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1650  CDS  NC_002977  1753427  1755886  +  2460  sensory box protein  YP_114093  decreased coverage  0.00487383  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1654  CDS  NC_002977  1757827  1758423  -  597  N utilization substance protein B  YP_114097  decreased coverage  0.00612472  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1655  CDS  NC_002977  1758420  1758899  -  480  6,7-dimethyl-8-ribityllumazine synthase  YP_114098  decreased coverage  0.00355092  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA1804  CDS  NC_002977  1933779  1934744  +  966  acetyl-CoA carboxylase, carboxyl transferase, alpha subunit  YP_114242  decreased coverage  0.0029893  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA2086  CDS  NC_002977  2245711  2246286  -  576  dinucleoside polyphosphate hydrolase  YP_114516  decreased coverage  0.0000223693  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA2376  CDS  NC_002977  2556889  2557359  -  471  30S ribosomal protein S7  YP_114792  decreased coverage  0.000622465  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA2377  CDS  NC_002977  2557378  2557752  -  375  30S ribosomal protein S12  YP_114793  decreased coverage  0.00376879  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA2442  CDS  NC_002977  2623708  2624343  -  636  MOSC domain-containing protein  YP_114856  decreased coverage  0.000472936  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA2853  CDS  NC_002977  3046666  3047910  -  1245  methane monooxygenase, B subunit  YP_115247  decreased coverage  0.0000502412  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA2934  CDS  NC_002977  3122655  3123218  -  564  hypothetical protein  YP_115326  decreased coverage  0.00447854  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA3091  CDS  NC_002977  3276960  3278324  -  1365  decarboxylase family protein  YP_115478  decreased coverage  0.00268916  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA_tRNA-Gly-1  tRNA  NC_002977  1109530  1109603  +  74  tRNA-Gly    decreased coverage  0.00109047  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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MCA_tRNA-Tyr-1  tRNA  NC_002977  1109428  1109512  +  85  tRNA-Tyr    decreased coverage  0.00106012  n/a    Methylococcus capsulatus str. Bath  Bacteria 
 
 
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