62 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
DET0056  CDS  NC_002936  50873  51034  +  162  hypothetical protein  YP_180809  decreased coverage  0.00237011  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0079  CDS  NC_002936  77229  78893  -  1665  trichloroethene reductive dehalogenase  YP_180831  decreased coverage  0.00164109  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0080  CDS  NC_002936  79177  79710  +  534  hypothetical protein  YP_180832  decreased coverage  0.0000124553  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0097  CDS  NC_002936  92373  93089  -  717  iron dependent repressor, putative  YP_180848  decreased coverage  0.0071213  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0104  CDS  NC_002936  101430  102416  +  987  hypothetical protein  YP_180855  decreased coverage  0.0000677137  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0105  CDS  NC_002936  103037  103876  -  840  degV family protein  YP_180856  decreased coverage  0.0000465331  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0125  CDS  NC_002936  122839  123864  +  1026  alcohol dehydrogenase, zinc-containing  YP_180875  decreased coverage  0.000121162  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0199  CDS  NC_002936  191777  192283  +  507  ferredoxin-thioredoxin reductase, catalytic subunit, putative/rubredoxin  YP_180947  decreased coverage  0.000596117  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0200  CDS  NC_002936  192371  193282  +  912  hypothetical protein  YP_180948  decreased coverage  0.0000745264  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0251  CDS  NC_002936  240825  241478  -  654  transcriptional repressor LexA, putative  YP_180999  decreased coverage  0.00843575  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0252  CDS  NC_002936  241589  241819  +  231  hypothetical protein  YP_181000  decreased coverage  0.00198773  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0306  CDS  NC_002936  294215  295732  +  1518  reductive dehalogenase, putative  YP_181054  decreased coverage  0.00204473  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0333  CDS  NC_002936  317053  318402  -  1350  preprotein translocase subunit SecD  YP_181080  decreased coverage  0.000488895  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0392  CDS  NC_002936  372979  373809  -  831  AP endonuclease  YP_181137  decreased coverage  0.000214103  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0433  CDS  NC_002936  407534  408217  -  684  hypothetical protein  YP_181177  decreased coverage  0.00529894  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0506  CDS  NC_002936  461730  462128  +  399  30S ribosomal protein S9  YP_181250  decreased coverage  0.00000893397  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0513  CDS  NC_002936  466677  467933  -  1257  S-adenosyl-L-homocysteine hydrolase  YP_181257  decreased coverage  0.00244731  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0522  CDS  NC_002936  475236  475649  +  414  hypothetical protein  YP_181266  decreased coverage  0.000722837  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0582  CDS  NC_002936  533991  535055  -  1065  magnesium and cobalt transport protein CorA  YP_181324  decreased coverage  0.000747796  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0590  CDS  NC_002936  540536  541540  -  1005  glyceraldehyde-3-phosphate dehydrogenase, type I  YP_181332  decreased coverage  0.000161937  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0600  CDS  NC_002936  550943  552031  -  1089  soluble hydrogenase, tritium exchange subunit  YP_181342  decreased coverage  0.00706485  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0639  CDS  NC_002936  591194  591883  +  690  hypothetical protein  YP_181381  decreased coverage  0.00130484  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0649  CDS  NC_002936  599284  599463  -  180  hypothetical protein  YP_181391  decreased coverage  0.0000217019  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0650  CDS  NC_002936  599608  600624  +  1017  ABC-type cobalamin/Fe3+-siderophores transport systems, periplasmic binding protein, putative  YP_181392  decreased coverage  0.000661971  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0657  CDS  NC_002936  605751  606809  +  1059  nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase  YP_181399  decreased coverage  0.00493685  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0740  CDS  NC_002936  681298  682152  -  855  diaminopimelate epimerase  YP_181475  decreased coverage  0.00112553  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0750  CDS  NC_002936  691099  691458  -  360  50S ribosomal protein L20  YP_181484  decreased coverage  0.0000580025  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0752  CDS  NC_002936  691673  692179  -  507  translation initiation factor IF-3  YP_181486  decreased coverage  0.00000893397  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0794  CDS  NC_002936  731239  732156  +  918  ABC transporter, ATP-binding protein  YP_181526  decreased coverage  0.00734303  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0913  CDS  NC_002936  837894  838349  +  456  hypothetical protein  YP_181638  decreased coverage  0.000596117  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0914  CDS  NC_002936  838407  839108  +  702  hypothetical protein  YP_181639  decreased coverage  0.000282954  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0935  CDS  NC_002936  856258  856914  -  657  endonuclease III  YP_181660  decreased coverage  0.0000351084  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0959  CDS  NC_002936  877880  878182  -  303  Smr domain-containing protein  YP_181682  decreased coverage  0.00245853  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0965  CDS  NC_002936  884615  885247  +  633  membrane protein  YP_181688  decreased coverage  0.0000215591  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0977  CDS  NC_002936  896894  897475  -  582  CDP-alcohol phosphatidyltransferase family protein  YP_181700  decreased coverage  0.0000321625  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET0978  CDS  NC_002936  897521  898669  -  1149  glycosyl transferase, group 1 family protein  YP_181701  decreased coverage  0.000355781  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET0985  CDS  NC_002936  903504  904979  -  1476  transcription elongation factor NusA  YP_181708  decreased coverage  0.00150789  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1025  CDS  NC_002936  931014  931727  +  714  ribonuclease III  YP_181741  decreased coverage  0.00427221  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1044  CDS  NC_002936  948903  949346  -  444  30S ribosomal protein S18  YP_181760  decreased coverage  0.00000893397  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1046  CDS  NC_002936  949837  950166  -  330  30S ribosomal protein S6  YP_181762  decreased coverage  0.00000381184  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1058  CDS  NC_002936  958881  959564  +  684  DNA-binding response regulator  YP_181773  decreased coverage  0.000187393  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1126  CDS  NC_002936  1030278  1030949  -  672  transcriptional regulator  YP_181841  decreased coverage  0.0000289398  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1127  CDS  NC_002936  1030971  1031741  -  771  hypothetical protein  YP_181842  decreased coverage  0.000223973  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1173  CDS  NC_002936  1070556  1071083  +  528  fwdE family protein  YP_181887  decreased coverage  0.0000142876  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET1198  CDS  NC_002936  1093541  1094089  +  549  bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase  YP_181911  decreased coverage  0.0000134652  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET1199  CDS  NC_002936  1094092  1095087  +  996  aspartate carbamoyltransferase catalytic subunit  YP_181912  decreased coverage  0.000831641  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET1213  CDS  NC_002936  1113516  1114073  -  558  hypothetical protein  YP_181926  decreased coverage  0.00201716  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET1238  CDS  NC_002936  1133960  1134778  +  819  putative lipoprotein  YP_181951  decreased coverage  0.000496143  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1239  CDS  NC_002936  1134794  1134919  -  126  hypothetical protein  YP_181952  decreased coverage  0.0000257401  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1240  CDS  NC_002936  1134961  1135590  +  630  peptidyl-prolyl cis-trans isomerase, cyclophilin-type  YP_181953  decreased coverage  0.0000181585  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1269  CDS  NC_002936  1157561  1158259  +  699  HNH endonuclease domain-containing protein  YP_181981  decreased coverage  0.0000309683  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1274  CDS  NC_002936  1161667  1162110  +  444  hypothetical protein  YP_181986  decreased coverage  0.000334048  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1324  CDS  NC_002936  1201992  1202900  -  909  hypothetical protein  YP_182035  decreased coverage  0.000450557  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1350  CDS  NC_002936  1219838  1220515  +  678  LuxR family DNA-binding response regulator  YP_182061  decreased coverage  0.00111586  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1355  CDS  NC_002936  1225222  1226349  +  1128  hypothetical protein  YP_182066  decreased coverage  0.00651759  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1495  CDS  NC_002936  1352970  1353791  -  822  hypothetical protein  YP_182195  decreased coverage  0.000420591  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1555  CDS  NC_002936  1401624  1401842  +  219  DNA-binding protein  YP_182252  decreased coverage  0.00000236293  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET1584  CDS  NC_002936  1423779  1424036  +  258  hypothetical protein  YP_182280  decreased coverage  0.00000526435  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET_De5S  rRNA  NC_002936  50767  50889  +  123  5S ribosomal RNA    decreased coverage  0.00210959  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
-
 
DET_tRNA-Arg-3  tRNA  NC_002936  877642  877717  -  76  tRNA-Arg    decreased coverage  0.00117786  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET_tRNA-Asp-1  tRNA  NC_002936  950330  950406  +  77  tRNA-Asp    decreased coverage  0.00000153906  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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DET_tRNA-His-1  tRNA  NC_002936  877734  877809  -  76  tRNA-His    decreased coverage  0.00107575  n/a    Dehalococcoides ethenogenes 195  Bacteria 
 
 
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