225 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
BCE_0001  CDS  NC_003909  408  1748  +  1341  chromosomal replication initiation protein  NP_976329  decreased coverage  0.000594007  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_0059  CDS  NC_003909  63796  64278  +  483  hypothetical protein  NP_976387  decreased coverage  0.00000000544172  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_0103  CDS  NC_003909  111964  115575  +  3612  DNA-directed RNA polymerase subunit beta'  NP_976431  decreased coverage  0.00223812  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_0240  CDS  NC_003909  244020  244553  +  534  invasion protein LagB  NP_976568  decreased coverage  0.00171662  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_0289  CDS  NC_003909  292735  293856  +  1122  chaperonin family protein  NP_976617  decreased coverage  0.00179412  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_0429  CDS  NC_003909  443920  444018  -  99  hypothetical protein  NP_976757  decreased coverage  0.0000000605437  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_0435  CDS  NC_003909  448662  450083  -  1422  Na+/H+ antiporter NhaC  NP_976763  decreased coverage  0.00534613  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_0612    NC_003909  630372  631036  -  665      decreased coverage  0.000100216  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_0613  CDS  NC_003909  631084  631224  -  141  hypothetical protein  NP_976939  decreased coverage  0.0000109431  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_0773  CDS  NC_003909  798443  799858  -  1416  amino acid permease  NP_977098  decreased coverage  0.00000509453  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_0782    NC_003909  807989  810089  -  2101      decreased coverage  0.000181661  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_0793  CDS  NC_003909  827015  827347  -  333  hypothetical protein  NP_977117  decreased coverage  0.0000337661  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_0809  CDS  NC_003909  838529  840196  +  1668  potassium-transporting ATPase subunit A  NP_977133  decreased coverage  0.0000041041  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_0829  CDS  NC_003909  855346  856863  -  1518  spore germination protein GerYA  NP_977152  decreased coverage  0.0000722012  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_0833  CDS  NC_003909  859612  860565  +  954  hypothetical protein  NP_977156  decreased coverage  0.0000000829965  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_0894  CDS  NC_003909  921929  923245  -  1317  branched-chain amino acid transport system II carrier protein  NP_977217  decreased coverage  0.000000586309  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_0952  CDS  NC_003909  970589  971734  +  1146  hypothetical protein  NP_977275  decreased coverage  0.00000215951  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1114  CDS  NC_003909  1122518  1122634  +  117  hypothetical protein  NP_977437  decreased coverage  0.00000242985  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1119  CDS  NC_003909  1126293  1127471  +  1179  hypothetical protein  NP_977442  decreased coverage  0.000323359  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1133  CDS  NC_003909  1137545  1138801  +  1257  cell cycle protein FtsW  NP_977456  decreased coverage  0.000414754  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1238  CDS  NC_003909  1247890  1248549  +  660  competence protein A, putative  NP_977559  decreased coverage  0.00092764  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1261  CDS  NC_003909  1268415  1269764  +  1350  catalase  NP_977582  decreased coverage  0.000000453157  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1396  CDS  NC_003909  1396491  1398881  +  2391  immune inhibitor A metalloprotease  NP_977717  decreased coverage  0.00116744  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1464  CDS  NC_003909  1458519  1459121  +  603  hypothetical protein  NP_977785  decreased coverage  0.0000536748  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1564  CDS  NC_003909  1536653  1537027  +  375  hypothetical protein  NP_977885  decreased coverage  0.0000000016362  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1577  CDS  NC_003909  1547061  1547681  -  621  hypothetical protein  NP_977898  decreased coverage  0.0000193859  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1612  CDS  NC_003909  1581456  1581935  +  480  lysM domain-containing protein  NP_977933  decreased coverage  0.0000000378837  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1624  CDS  NC_003909  1590590  1590724  +  135  hypothetical protein  NP_977945  decreased coverage  0.00000229476  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1637  CDS  NC_003909  1601362  1601634  +  273  DNA-binding protein HU  NP_977958  decreased coverage  0.00420342  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1638  CDS  NC_003909  1601755  1602324  +  570  GTP cyclohydrolase I  NP_977959  decreased coverage  0.00226958  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1655  CDS  NC_003909  1615932  1616720  +  789  hypothetical protein  NP_977976  decreased coverage  0.0091165  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1707  CDS  NC_003909  1661955  1662821  +  867  5'-3' exonuclease  NP_978028  decreased coverage  0.00574418  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1735  CDS  NC_003909  1684429  1684749  +  321  hypothetical protein  NP_978056  decreased coverage  0.00270412  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1782  CDS  NC_003909  1724230  1724469  +  240  flagellar motor switch protein  NP_978102  decreased coverage  0.00378594  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1783  CDS  NC_003909  1724484  1725470  +  987  flagellar motor switch protein FliM  NP_978103  decreased coverage  0.00985901  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1829  CDS  NC_003909  1766573  1767139  +  567  RNA polymerase factor sigma-70  NP_978146  decreased coverage  0.00470761  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1850  CDS  NC_003909  1785888  1786700  +  813  hypothetical protein  NP_978167  decreased coverage  0.00976816  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1885  CDS  NC_003909  1818829  1819737  +  909  hypothetical protein  NP_978201  decreased coverage  0.0070787  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1886  CDS  NC_003909  1819741  1820346  +  606  hypothetical protein  NP_978202  decreased coverage  0.002494  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1968  CDS  NC_003909  1902733  1903893  +  1161  non-hemolytic enterotoxin A  NP_978284  decreased coverage  0.000712979  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1969  CDS  NC_003909  1903925  1905133  +  1209  non-hemolytic enterotoxin B  NP_978285  decreased coverage  0.00280076  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1975  CDS  NC_003909  1909205  1909876  +  672  deoxyribose-phosphate aldolase  NP_978291  decreased coverage  0.0000361554  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1979  CDS  NC_003909  1913075  1913470  +  396  hypothetical protein  NP_978295  decreased coverage  0.00338876  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1988  CDS  NC_003909  1920956  1921837  +  882  ABC transporter, ATP-binding protein  NP_978304  decreased coverage  0.000119924  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_1989  CDS  NC_003909  1921853  1922638  +  786  hypothetical protein  NP_978305  decreased coverage  0.000959722  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2034  CDS  NC_003909  1966209  1967162  +  954  D-alanyl-D-alanine carboxypeptidase family protein  NP_978350  decreased coverage  0.00330473  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2050  CDS  NC_003909  1980391  1981029  +  639  hypothetical protein  NP_978365  decreased coverage  0.00000629601  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2051  CDS  NC_003909  1981650  1982945  +  1296  homoserine dehydrogenase  NP_978366  decreased coverage  0.000000682856  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2060  CDS  NC_003909  1991293  1992654  +  1362  sensor histidine kinase  NP_978375  decreased coverage  0.000124716  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2080  CDS  NC_003909  2009590  2010525  +  936  aldo/keto reductase family oxidoreductase  NP_978393  decreased coverage  0.0058504  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2189  CDS  NC_003909  2094416  2095585  +  1170  DEAD-box ATP dependent DNA helicase  NP_978502  decreased coverage  0.000387501  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2234  CDS  NC_003909  2134846  2135622  +  777  hypothetical protein  NP_978546  decreased coverage  0.0000000139597  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2301  CDS  NC_003909  2204266  2204373  +  108  hypothetical protein  NP_978612  decreased coverage  0.00509705  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2320  CDS  NC_003909  2222674  2223270  +  597  hypothetical protein  NP_978631  decreased coverage  0.00050199  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2328  CDS  NC_003909  2230940  2232250  +  1311  hypothetical protein  NP_978638  decreased coverage  0.00000223994  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2366  CDS  NC_003909  2260106  2260264  -  159  hypothetical protein  NP_978676  decreased coverage  0.00224673  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2367  CDS  NC_003909  2260364  2260507  +  144  hypothetical protein  NP_978677  decreased coverage  0.00512676  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2368  CDS  NC_003909  2260392  2260643  +  252  hypothetical protein  NP_978678  decreased coverage  0.00768367  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2369  CDS  NC_003909  2260712  2260921  -  210  hypothetical protein  NP_978679  decreased coverage  0.00667036  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2392  CDS  NC_003909  2281495  2281668  -  174  hypothetical protein  NP_978702  decreased coverage  0.00256195  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2433  CDS  NC_003909  2323658  2324524  +  867  metallo-beta-lactamase family protein  NP_978742  decreased coverage  0.0000453521  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2434  CDS  NC_003909  2324611  2325201  -  591  hypothetical protein  NP_978743  decreased coverage  0.000723307  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2447  CDS  NC_003909  2335839  2336351  +  513  acetyltransferase  NP_978756  decreased coverage  0.000832578  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2454  CDS  NC_003909  2340735  2340938  -  204  cold shock protein CspA  NP_978763  decreased coverage  0.0000000020427  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2460  CDS  NC_003909  2345776  2346549  +  774  HAD superfamily hydrolase  NP_978769  decreased coverage  0.00284871  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2475  CDS  NC_003909  2360402  2362198  +  1797  ABC transporter, ATP-binding/permease protein  NP_978784  decreased coverage  0.00961334  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2480  CDS  NC_003909  2365271  2365855  -  585  amino acid transporter LysE  NP_978789  decreased coverage  0.00208965  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2481  CDS  NC_003909  2365972  2366529  +  558  DNA-binding protein  NP_978790  decreased coverage  0.00193646  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2486  CDS  NC_003909  2368875  2370161  +  1287  hypothetical protein  NP_978795  decreased coverage  0.00000351815  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2490  CDS  NC_003909  2372423  2373007  +  585  O-methyltransferase family protein  NP_978799  decreased coverage  0.000302864  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2491  CDS  NC_003909  2373357  2374433  +  1077  hypothetical protein  NP_978800  decreased coverage  0.000702786  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2492  CDS  NC_003909  2374458  2375291  +  834  hypothetical protein  NP_978801  decreased coverage  0.000298686  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2504  CDS  NC_003909  2386739  2387974  +  1236  tetracycline-efflux transporter, putative  NP_978813  decreased coverage  0.00179141  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2512  CDS  NC_003909  2394244  2396571  +  2328  ABC transporter, permease protein  NP_978821  decreased coverage  0.00525405  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2538  CDS  NC_003909  2418795  2420918  +  2124  penicillin-binding protein Pbp2b  NP_978846  decreased coverage  0.00452146  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2539  CDS  NC_003909  2421173  2422078  +  906  beta-lactamase  NP_978847  decreased coverage  0.000363771  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2540  CDS  NC_003909  2422090  2422290  -  201  hypothetical protein  NP_978848  decreased coverage  0.000054586  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2541  CDS  NC_003909  2422326  2423168  +  843  hypothetical protein  NP_978849  decreased coverage  0.000889326  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2546  CDS  NC_003909  2426377  2426676  -  300  hypothetical protein  NP_978854  decreased coverage  0.00916388  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2570  CDS  NC_003909  2446082  2446456  +  375  hypothetical protein  NP_978878  decreased coverage  0.00000178092  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2577  CDS  NC_003909  2457205  2457546  +  342  hypothetical protein  NP_978885  decreased coverage  0.000426616  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2597  CDS  NC_003909  2473825  2474862  +  1038  ralimis  NP_978904  decreased coverage  0.00028619  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2604  CDS  NC_003909  2480022  2480948  +  927  zinc-binding dehydrogenase family oxidoreductase  NP_978911  decreased coverage  0.000105247  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2620  CDS  NC_003909  2493625  2495253  +  1629  ABC transporter, ATP-binding protein, putative  NP_978926  decreased coverage  0.00269042  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2626  CDS  NC_003909  2501089  2502129  +  1041  homoserine dehydrogenase  NP_978932  decreased coverage  0.000765985  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2645  CDS  NC_003909  2515397  2517784  +  2388  hypothetical protein  NP_978951  decreased coverage  0.00362864  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2648  CDS  NC_003909  2517993  2518763  +  771  hypothetical protein  NP_978954  decreased coverage  0.0000281048  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2649  CDS  NC_003909  2518906  2519322  +  417  hypothetical protein  NP_978955  decreased coverage  0.0000181817  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2650  CDS  NC_003909  2519445  2519666  +  222  hypothetical protein  NP_978956  decreased coverage  0.00000676959  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2655  CDS  NC_003909  2523521  2524804  +  1284  permease, putative  NP_978961  decreased coverage  0.000943346  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2660  CDS  NC_003909  2527719  2528297  +  579  hypothetical protein  NP_978966  decreased coverage  0.000212284  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2672  CDS  NC_003909  2541323  2542255  -  933  hypothetical protein  NP_978978  decreased coverage  0.00326275  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2673  CDS  NC_003909  2542332  2542841  +  510  hypothetical protein  NP_978979  decreased coverage  0.00128043  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2681  CDS  NC_003909  2550899  2551720  +  822  short chain dehydrogenase family protein  NP_978987  decreased coverage  0.00380586  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2682  CDS  NC_003909  2552013  2553335  +  1323  permease, putative  NP_978988  decreased coverage  0.00193571  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2687  CDS  NC_003909  2556390  2557196  +  807  degV family protein  NP_978992  decreased coverage  0.0036074  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2694  CDS  NC_003909  2563283  2564155  +  873  alpha/beta fold family hydrolase  NP_978999  decreased coverage  0.00231525  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2699  CDS  NC_003909  2569604  2570836  +  1233  permease, putative  NP_979004  decreased coverage  0.000249599  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2702  CDS  NC_003909  2572089  2572889  +  801  acetyltransferase  NP_979007  decreased coverage  0.0000361554  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
BCE_2703  CDS  NC_003909  2572935  2573798  +  864  glycerophosphoryl diester phosphodiesterase, putative  NP_979008  decreased coverage  0.0000518352  n/a    Bacillus cereus ATCC 10987  Bacteria 
 
 
-
 
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