60 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
BLD_0047  CDS  NC_010816  58838  59908  +  1071  ribose/xylose/arabinose/galactoside ABC transporter permease  YP_001953991  decreased coverage  0.00000657164  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0052  CDS  NC_010816  64862  65494  -  633  hypothetical protein  YP_001953996  decreased coverage  0.00000726443  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0135  CDS  NC_010816  161293  162537  +  1245  tRNA-dihydrouridine synthase  YP_001954079  decreased coverage  0.000169706  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0139  CDS  NC_010816  164916  166274  +  1359  putative cell division initiation protein  YP_001954083  decreased coverage  0.00239909  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0225  CDS  NC_010816  286462  287406  -  945  galactose mutarotase  YP_001954169  decreased coverage  0.00000500571  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0282  CDS  NC_010816  351778  352287  +  510  Xre family transcriptional regulator  YP_001954226  decreased coverage  0.00774991  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0307  CDS  NC_010816  385963  386439  +  477  dUTPase  YP_001954251  decreased coverage  0.000000195084  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0313  CDS  NC_010816  392767  393012  -  246  transposase  YP_001954257  decreased coverage  0.000212101  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0314  CDS  NC_010816  393248  394177  +  930  transposase  YP_001954258  decreased coverage  0.00173653  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0371  CDS  NC_010816  448283  448585  -  303  hypothetical protein  YP_001954315  decreased coverage  0.000400561  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_0372  CDS  NC_010816  448623  449105  -  483  hypothetical protein  YP_001954316  decreased coverage  0.000205962  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_0404  CDS  NC_010816  484694  485545  +  852  elongation factor Ts  YP_001954348  decreased coverage  0.0000167696  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0434  CDS  NC_010816  519292  519540  +  249  preprotein translocase subunit SecG  YP_001954378  decreased coverage  0.00104862  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_0447  CDS  NC_010816  534032  534865  -  834  hypothetical protein  YP_001954391  decreased coverage  0.000016468  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_0577  CDS  NC_010816  659840  661204  +  1365  Na+-driven multidrug efflux pump  YP_001954521  decreased coverage  0.00131825  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_0626  CDS  NC_010816  714462  714860  -  399  hypothetical protein  YP_001954570  decreased coverage  0.0000456204  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_0629  CDS  NC_010816  718456  719820  +  1365  Xanthine/uracil permease  YP_001954573  decreased coverage  0.0040794  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0720  CDS  NC_010816  824407  825105  +  699  phosphoglycerate mutase family protein  YP_001954664  decreased coverage  0.00316433  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0721  CDS  NC_010816  825735  827435  +  1701  phosphotransacetylase  YP_001954665  decreased coverage  0.000504699  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0761  CDS  NC_010816  874333  874632  -  300  hypothetical protein  YP_001954705  decreased coverage  0.0000133988  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0767  CDS  NC_010816  881325  882269  +  945  hemolysin III-like membrane protein  YP_001954711  decreased coverage  0.00245971  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0771  CDS  NC_010816  885058  885627  -  570  hypothetical protein  YP_001954715  decreased coverage  0.00137244  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_0875  CDS  NC_010816  1003120  1003983  +  864  amino acid ABC transporter/signal transduction systems periplasmic protein  YP_001954819  decreased coverage  0.00496425  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_0912  CDS  NC_010816  1049198  1050922  +  1725  hypothetical protein  YP_001954856  decreased coverage  0.000369378  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1094  CDS  NC_010816  1284579  1284899  +  321  arsenate reductase  YP_001955038  decreased coverage  0.0000000486648  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1135  CDS  NC_010816  1323166  1324401  -  1236  phage lysin-like lysozyme M1  YP_001955079  decreased coverage  0.00113309  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_1152  CDS  NC_010816  1339475  1339810  -  336  hypothetical protein  YP_001955095  decreased coverage  0.00182719  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1153  CDS  NC_010816  1339807  1340259  -  453  hypothetical protein  YP_001955096  decreased coverage  0.00248916  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1154  CDS  NC_010816  1340271  1340585  -  315  hypothetical protein  YP_001955097  decreased coverage  0.00130878  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1303  CDS  NC_010816  1504080  1504880  -  801  MalG-type ABC sugar transport system permease component  YP_001955246  decreased coverage  0.00414048  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1304  CDS  NC_010816  1504896  1505900  -  1005  MalF-type ABC sugar transport systems permease component  YP_001955247  decreased coverage  0.00913134  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1309  CDS  NC_010816  1510453  1511805  -  1353  Xanthine/uracil permease  YP_001955252  decreased coverage  0.00197381  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1313  CDS  NC_010816  1514453  1516333  -  1881  molecular chaperone DnaK  YP_001955256  decreased coverage  0.0013795  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1317  CDS  NC_010816  1519965  1520681  -  717  MalG-type ABC sugar transport system permease component  YP_001955260  decreased coverage  0.0000354335  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1331  CDS  NC_010816  1538532  1540058  -  1527  sucrose phosphorylase  YP_001955274  decreased coverage  0.00201506  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1543  CDS  NC_010816  1833662  1835257  -  1596  beta-xylosidase  YP_001955486  decreased coverage  0.000200892  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1622  CDS  NC_010816  1938965  1939858  +  894  transcription antiterminator  YP_001955565  decreased coverage  0.000761547  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1683  CDS  NC_010816  2023967  2025493  +  1527  amino acid transporter  YP_001955626  decreased coverage  0.000204712  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1707  CDS  NC_010816  2054152  2054793  +  642  50S ribosomal protein L3  YP_001955650  decreased coverage  0.00287886  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1708  CDS  NC_010816  2054800  2055456  +  657  50S ribosomal protein L4  YP_001955651  decreased coverage  0.00274066  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1726  CDS  NC_010816  2062937  2063389  +  453  50S ribosomal protein L15  YP_001955669  decreased coverage  0.00000205453  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1727  CDS  NC_010816  2063662  2064999  +  1338  preprotein translocase subunit SecY  YP_001955670  decreased coverage  0.0000416171  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1762  CDS  NC_010816  2105459  2106775  +  1317  MalE-type ABC sugar transport system periplasmic component  YP_001955705  decreased coverage  0.0000740157  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1796  CDS  NC_010816  2145129  2145773  -  645  hypothetical protein  YP_001955739  decreased coverage  0.00393074  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1811  CDS  NC_010816  2159102  2159890  -  789  hypothetical protein  YP_001955754  decreased coverage  0.00116023  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1812  CDS  NC_010816  2159905  2160015  +  111  hypothetical protein  YP_001955755  decreased coverage  0.000143979  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1828  CDS  NC_010816  2180068  2180475  -  408  hypothetical protein  YP_001955771  decreased coverage  0.00465235  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1829  CDS  NC_010816  2180599  2181435  -  837  chromosome partitioning ATPase  YP_001955772  decreased coverage  0.00367094  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1836  CDS  NC_010816  2185785  2186798  +  1014  UDP-glucose 4-epimerase  YP_001955779  decreased coverage  0.0000102298  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1859  CDS  NC_010816  2214722  2215879  +  1158  xylose ABC transporter periplasmic protein  YP_001955802  decreased coverage  0.00000887855  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1870  CDS  NC_010816  2224038  2224271  -  234  putative permease  YP_001955813  decreased coverage  0.000098587  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1893  CDS  NC_010816  2248428  2249516  +  1089  branched-chain amino acid ABC transporter permease  YP_001955836  decreased coverage  0.00991478  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_1946  CDS  NC_010816  2319776  2320309  +  534  MarR family transcriptional regulator  YP_001955889  decreased coverage  0.00612369  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_t0006  tRNA  NC_010816  535025  535100  +  76  tRNA-Gly    decreased coverage  0.000000876762  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_t0007  tRNA  NC_010816  535125  535195  +  71  tRNA-Cys    decreased coverage  0.000000892535  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_t0008  tRNA  NC_010816  535237  535311  +  75  tRNA-Val    decreased coverage  0.000000957098  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_t0019  tRNA  NC_010816  849150  849223  -  74  tRNA-Leu    decreased coverage  0.000000251522  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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BLD_t0026  tRNA  NC_010816  1289379  1289454  -  76  tRNA-Val    decreased coverage  0.000000991337  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_t0027  tRNA  NC_010816  1289503  1289574  -  72  tRNA-Val    decreased coverage  0.000000730329  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
-
 
BLD_t0052  tRNA  NC_010816  2126113  2126189  -  77  tRNA-Pro    decreased coverage  0.00000162603  n/a    Bifidobacterium longum DJO10A  Bacteria 
 
 
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