192 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Cthe_0019  CDS  NC_009012  26276  26602  +  327  P-II family regulatory protein  YP_001036454  decreased coverage  0.0000000000803285  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0032  CDS  NC_009012  38313  40085  -  1773  glycoside hydrolase family protein  YP_001036466  decreased coverage  0.00146021  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0034  CDS  NC_009012  43237  43896  -  660  cyclic nucleotide-binding protein  YP_001036468  decreased coverage  0.00000350916  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0054  CDS  NC_009012  71948  74137  +  2190  hypothetical protein  YP_001036488  decreased coverage  0.000080624  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0068  CDS  NC_009012  99295  99906  -  612  peptidylprolyl isomerase  YP_001036502  decreased coverage  0.0000000160965  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0078  CDS  NC_009012  109659  109865  -  207  hypothetical protein  YP_001036512  decreased coverage  0.0000000000380908  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0100  CDS  NC_009012  132322  133104  +  783  hypothetical protein  YP_001036534  decreased coverage  0.00256513  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0126  CDS  NC_009012  155120  155584  +  465  CheC-like protein  YP_001036560  decreased coverage  0.000893437  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0162  CDS  NC_009012  201270  201548  +  279  50S ribosomal protein L27  YP_001036596  decreased coverage  0.000470304  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0184  CDS  NC_009012  219986  221089  +  1104  type IV pilus assembly protein PilM  YP_001036618  decreased coverage  0.0000394027  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0187  CDS  NC_009012  225552  226724  +  1173  hypothetical protein  YP_001036621  decreased coverage  0.00032944  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0188  CDS  NC_009012  226792  227583  +  792  ribonuclease PH  YP_001036622  decreased coverage  0.00190846  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0210  CDS  NC_009012  255476  256537  -  1062  LacI family transcription regulator  YP_001036644  decreased coverage  0.0000000188149  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0258  CDS  NC_009012  317319  318728  +  1410  cellulosome enzyme, dockerin type I  YP_001036690  decreased coverage  0.000000567445  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0261  CDS  NC_009012  321846  322499  +  654  HAD family hydrolase  YP_001036693  decreased coverage  0.00000130583  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0264  CDS  NC_009012  324591  325016  +  426  hypothetical protein  YP_001036696  decreased coverage  0.000000192564  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0274  CDS  NC_009012  339019  340710  -  1692  glycoside hydrolase family protein  YP_001036706  decreased coverage  0.00113767  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0289  CDS  NC_009012  359967  362324  +  2358  DEAD_2  YP_001036721  decreased coverage  0.00121679  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0311  CDS  NC_009012  389538  392366  +  2829  excinuclease ABC subunit A  YP_001036742  decreased coverage  0.00463978  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0317  CDS  NC_009012  400705  401376  -  672  hypothetical protein  YP_001036748  decreased coverage  0.000000000861184  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0339  CDS  NC_009012  427459  428025  +  567  histidine kinase  YP_001036770  decreased coverage  0.0000463655  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0340  CDS  NC_009012  428009  428377  +  369  ferredoxin  YP_001036771  decreased coverage  0.0000592647  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0368  CDS  NC_009012  462722  463468  +  747  NCAIR mutase (PurE)-related protein  YP_001036799  decreased coverage  0.00104392  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0374  CDS  NC_009012  470198  471532  +  1335  glutamate dehydrogenase  YP_001036805  decreased coverage  0.0000129016  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0387  CDS  NC_009012  481555  482502  +  948  transposase, IS4  YP_001036818  decreased coverage  0.00245948  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0398  CDS  NC_009012  495575  495895  +  321  hypothetical protein  YP_001036829  decreased coverage  0.000000000107451  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0406  CDS  NC_009012  507482  508219  -  738  hypothetical protein  YP_001036837  decreased coverage  0.00000345216  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0444  CDS  NC_009012  558620  559861  +  1242  cell division protein FtsA  YP_001036875  decreased coverage  0.00000368895  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0479  CDS  NC_009012  593356  593718  +  363  response regulator receiver protein  YP_001036910  decreased coverage  0.0000000732945  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0480  CDS  NC_009012  593788  594285  +  498  hypothetical protein  YP_001036911  decreased coverage  0.000000265  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0481  CDS  NC_009012  594275  595057  +  783  flagellar biosynthesis protein FliP  YP_001036912  decreased coverage  0.00000846074  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0512  CDS  NC_009012  625728  627248  -  1521  phage integrase  YP_001036942  decreased coverage  0.0000591844  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0516  CDS  NC_009012  631673  632029  -  357  IS66 Orf2 like  YP_001036946  decreased coverage  0.000000107243  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0526  CDS  NC_009012  643797  644240  +  444  hypothetical protein  YP_001036956  decreased coverage  0.0000745827  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0552  CDS  NC_009012  674791  675342  -  552  transcriptional regulator  YP_001036981  decreased coverage  0.0032692  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0555  CDS  NC_009012  680567  681808  +  1242  PpiC-type peptidyl-prolyl cis-trans isomerase  YP_001036984  decreased coverage  0.0000000887936  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0567  CDS  NC_009012  695212  695724  +  513  peptide deformylase  YP_001036996  decreased coverage  0.0000000525099  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0568  CDS  NC_009012  695783  696718  +  936  methionyl-tRNA formyltransferase  YP_001036997  decreased coverage  0.00000116959  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0573  CDS  NC_009012  700646  701383  +  738  protein serine/threonine phosphatases  YP_001037002  decreased coverage  0.0000179403  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0605  CDS  NC_009012  740565  741677  +  1113  PgdS peptidase. cysteine peptidase. MEROPS family C40  YP_001037033  decreased coverage  0.000243263  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0731  CDS  NC_009012  888602  889114  +  513  shikimate kinase  YP_001037159  decreased coverage  0.000355155  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0735  CDS  NC_009012  893001  893807  -  807  cellulosome anchoring protein, cohesin region  YP_001037163  decreased coverage  0.00000183583  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0741  CDS  NC_009012  903102  904529  -  1428  adenylosuccinate lyase  YP_001037169  decreased coverage  0.00000408437  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0774  CDS  NC_009012  935678  935926  -  249  RNA chaperone Hfq  YP_001037202  decreased coverage  0.0000000000911615  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0775  CDS  NC_009012  936033  936974  -  942  tRNA delta(2)-isopentenylpyrophosphate transferase  YP_001037203  decreased coverage  0.00000000929086  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0778  CDS  NC_009012  941973  942365  -  393  hypothetical protein  YP_001037206  decreased coverage  0.00605117  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0804  CDS  NC_009012  971752  972324  +  573  MerR family transcriptional regulator  YP_001037232  decreased coverage  0.000000127204  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0847  CDS  NC_009012  1023176  1023733  -  558  elongation factor P  YP_001037275  decreased coverage  0.0000000412318  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0852  CDS  NC_009012  1026968  1027813  -  846  type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A  YP_001037279  decreased coverage  0.0000000579083  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0867  CDS  NC_009012  1042626  1042832  -  207  2-oxoglutarate ferredoxin oxidoreductase, delta subunit  YP_001037294  decreased coverage  0.0000000000250696  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0868  CDS  NC_009012  1042845  1043555  -  711  type IV pilus assembly PilZ  YP_001037295  decreased coverage  0.00000000129283  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0882  CDS  NC_009012  1058453  1059343  -  891  hypothetical protein  YP_001037309  decreased coverage  0.00000008536  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0895  CDS  NC_009012  1071207  1072283  -  1077  RNA polymerase sigma factor RpoD  YP_001037322  decreased coverage  0.0000160053  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0941  CDS  NC_009012  1128333  1128950  -  618  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase  YP_001037368  decreased coverage  0.000000424971  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0942  CDS  NC_009012  1128934  1130295  -  1362  MiaB-like tRNA modifying enzyme YliG  YP_001037369  decreased coverage  0.000000162674  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0960  CDS  NC_009012  1148613  1150325  -  1713  SpoIID/LytB domain-containing protein  YP_001037387  decreased coverage  0.00000216534  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0992  CDS  NC_009012  1187068  1187421  -  354  50S ribosomal protein L7AE  YP_001037417  decreased coverage  0.00000000143907  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0993  CDS  NC_009012  1187408  1187686  -  279  hypothetical protein  YP_001037418  decreased coverage  0.000000000776447  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0994  CDS  NC_009012  1187769  1188983  -  1215  NusA antitermination factor  YP_001037419  decreased coverage  0.000000558995  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_0999  CDS  NC_009012  1196978  1198123  -  1146  1-deoxy-D-xylulose 5-phosphate reductoisomerase  YP_001037424  decreased coverage  0.0000000542837  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1013  CDS  NC_009012  1211382  1212464  -  1083  hypothetical protein  YP_001037438  decreased coverage  0.0000000395023  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1017  CDS  NC_009012  1217683  1217985  -  303  hypothetical protein  YP_001037442  decreased coverage  0.000000399363  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1050  CDS  NC_009012  1253935  1254984  -  1050  recA protein  YP_001037475  decreased coverage  0.000000195685  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1090  CDS  NC_009012  1296183  1296965  -  783  hypothetical protein  YP_001037515  decreased coverage  0.0000000617763  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1097  CDS  NC_009012  1305352  1306125  -  774  ATP-dependent Clp protease proteolytic subunit ClpP  YP_001037522  decreased coverage  0.0000000231282  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1166  CDS  NC_009012  1390751  1391629  -  879  hypothetical protein  YP_001037591  decreased coverage  0.00000000552202  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1178  CDS  NC_009012  1406068  1406793  -  726  isochorismatase hydrolase  YP_001037603  decreased coverage  0.0000195875  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1185  CDS  NC_009012  1413880  1415160  -  1281  hypothetical protein  YP_001037610  decreased coverage  0.0000105816  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1197  CDS  NC_009012  1426715  1428130  -  1416  hypothetical protein  YP_001037622  decreased coverage  0.00000101518  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1211  CDS  NC_009012  1445603  1446967  -  1365  tryptophan synthase subunit beta  YP_001037636  decreased coverage  0.00000141811  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1225  CDS  NC_009012  1465982  1466476  -  495  translation initiation factor 3  YP_001037650  decreased coverage  0.0000000314962  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1228  CDS  NC_009012  1468610  1470517  -  1908  threonyl-tRNA synthetase  YP_001037653  decreased coverage  0.000338672  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1247  CDS  NC_009012  1511773  1512402  -  630  phosphoribosylglycinamide formyltransferase  YP_001037672  decreased coverage  0.00000481744  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1251  CDS  NC_009012  1515687  1517084  -  1398  xanthine/uracil/vitamin C permease  YP_001037676  decreased coverage  0.000000260393  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1252  CDS  NC_009012  1517379  1518464  -  1086  auxin efflux carrier  YP_001037677  decreased coverage  0.00000147214  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1277  CDS  NC_009012  1552739  1553371  -  633  putative methyltransferase  YP_001037702  decreased coverage  0.00000114874  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1288  CDS  NC_009012  1566147  1566833  -  687  two component transcriptional regulator  YP_001037713  decreased coverage  0.00000000128008  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1312  CDS  NC_009012  1595498  1596886  -  1389  glycyl-tRNA synthetase  YP_001037737  decreased coverage  0.00852036  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1332  CDS  NC_009012  1621165  1622418  -  1254  histidyl-tRNA synthetase  YP_001037757  decreased coverage  0.000373388  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1344  CDS  NC_009012  1635311  1637485  -  2175  (p)ppGpp synthetase I, SpoT/RelA  YP_001037769  decreased coverage  0.0000566061  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1345  CDS  NC_009012  1637576  1638091  -  516  adenine phosphoribosyltransferase  YP_001037770  decreased coverage  0.00000290871  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1349  CDS  NC_009012  1641943  1643346  +  1404  undecaprenyl-phosphate galactose phosphotransferase  YP_001037774  decreased coverage  0.0000163511  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1350  CDS  NC_009012  1643359  1643763  -  405  single-strand binding protein  YP_001037775  decreased coverage  0.000000023456  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1388  CDS  NC_009012  1694714  1695007  -  294  TrpR like protein, YerC/YecD  YP_001037813  decreased coverage  0.0000000000780152  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1394  CDS  NC_009012  1703851  1704561  -  711  two component transcriptional regulator  YP_001037819  decreased coverage  0.00000024965  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1412  CDS  NC_009012  1730642  1731826  -  1185  tryptophan synthase subunit beta  YP_001037836  decreased coverage  0.00140909  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1426  CDS  NC_009012  1747073  1747807  +  735  AzlC-like protein  YP_001037850  decreased coverage  0.000000261082  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1466  CDS  NC_009012  1784209  1784754  -  546  hypothetical protein  YP_001037888  decreased coverage  0.000199339  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1484  CDS  NC_009012  1804733  1805443  -  711  transcriptional regulator  YP_001037906  decreased coverage  0.0000000331721  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1500  CDS  NC_009012  1822430  1824322  -  1893  ABC transporter related protein  YP_001037921  decreased coverage  0.0000079767  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1543  CDS  NC_009012  1870769  1872514  -  1746  aspartyl-tRNA synthetase  YP_001037963  decreased coverage  0.00178145  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1563  CDS  NC_009012  1891537  1892208  +  672  ABC transporter related protein  YP_001037982  decreased coverage  0.0000000128837  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1564  CDS  NC_009012  1892313  1892852  +  540  GCN5-related N-acetyltransferase  YP_001037983  decreased coverage  0.00000000684291  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1601  CDS  NC_009012  1932599  1933249  -  651  phosphate uptake regulator, PhoU  YP_001038020  decreased coverage  0.000531756  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1610  CDS  NC_009012  1940561  1940779  -  219  hypothetical protein  YP_001038027  decreased coverage  0.0000000000304445  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1635  CDS  NC_009012  1962300  1963199  -  900  hypothetical protein  YP_001038051  decreased coverage  0.00000000596322  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1649  CDS  NC_009012  1974489  1975286  -  798  BRO-like protein  YP_001038065  decreased coverage  0.0000543299  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1689  CDS  NC_009012  2013320  2014165  -  846  hypothetical protein  YP_001038104  decreased coverage  0.000531996  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1723  CDS  NC_009012  2045577  2046059  -  483  P27 family phage terminase small subunit  YP_001038137  decreased coverage  0.000117045  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
Cthe_1742  CDS  NC_009012  2062994  2063317  -  324  helix-turn-helix, type 11 containing protein  YP_001038156  decreased coverage  0.0000000021315  n/a    Clostridium thermocellum ATCC 27405  Bacteria 
 
 
-
 
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