150 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
CPF_0047  CDS  NC_008261  53171  53959  +  789  prolipoprotein diacylglyceryl transferase  YP_694514  decreased coverage  0.000638304  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0114  CDS  NC_008261  134977  135777  +  801  hypothetical protein  YP_694578  decreased coverage  0.000247696  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0131  CDS  NC_008261  157407  158333  +  927  CAAX amino terminal protease family protein  YP_694595  decreased coverage  0.0000026669  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0140  CDS  NC_008261  166247  167071  +  825  putative type II restriction endonuclease  YP_694604  decreased coverage  0.000000224977  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0296  CDS  NC_008261  351354  352040  +  687  putative cell division ATP-binding protein FtsE  YP_694756  decreased coverage  0.000000631483  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0297  CDS  NC_008261  352030  352938  +  909  putative cell division protein  YP_694757  decreased coverage  0.000570278  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0334  CDS  NC_008261  396713  396997  +  285  hypothetical protein  YP_694794  decreased coverage  0.0000777627  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0354  CDS  NC_008261  423044  424579  +  1536  cardiolipin synthetase  YP_694811  decreased coverage  0.00517773  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0448  CDS  NC_008261  533302  533970  +  669  hypothetical protein  YP_694905  decreased coverage  0.00788476  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0449  CDS  NC_008261  534086  534466  +  381  lactoylglutathione lyase  YP_694906  decreased coverage  0.00132524  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0456  CDS  NC_008261  541443  543263  +  1821  hypothetical protein  YP_694913  decreased coverage  0.0000703218  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0462  CDS  NC_008261  548818  549855  +  1038  hypothetical protein  YP_694919  decreased coverage  0.00000893155  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0465  CDS  NC_008261  552224  552877  +  654  capsular polysaccharide biosynthesis protein  YP_694922  decreased coverage  0.00000141765  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0466  CDS  NC_008261  553078  553746  +  669  capsular polysaccharide biosynthesis protein  YP_694923  decreased coverage  0.0000106234  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0498  CDS  NC_008261  593925  594641  +  717  DNA-binding response regulator  YP_694952  decreased coverage  0.0000000794566  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0603  CDS  NC_008261  725221  725961  +  741  hypothetical protein  YP_695056  decreased coverage  0.0000500963  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0604  CDS  NC_008261  725970  727421  +  1452  polysaccharide biosynthesis protein  YP_695057  decreased coverage  0.0000572815  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0698  CDS  NC_008261  833435  833950  +  516  hypothetical protein  YP_695150  decreased coverage  0.00000414221  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0758  CDS  NC_008261  900169  901122  +  954  hypothetical protein  YP_695209  decreased coverage  0.0000351151  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0776  CDS  NC_008261  926776  927588  +  813  hypothetical protein  YP_695227  decreased coverage  0.00000379179  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0777  CDS  NC_008261  927631  928329  +  699  putative scdA protein  YP_695228  decreased coverage  0.0000142333  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0788  CDS  NC_008261  937846  938775  +  930  2-dehydropantoate 2-reductase  YP_695239  decreased coverage  0.000509369  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0796  CDS  NC_008261  944042  944782  +  741  hypothetical protein  YP_695247  decreased coverage  0.0000584679  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0811  CDS  NC_008261  961312  961800  +  489  acetyltransferase  YP_695262  decreased coverage  0.000146816  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0823  CDS  NC_008261  973394  974311  +  918  polysaccharide deacetylase family protein  YP_695274  decreased coverage  0.000000472378  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0824  CDS  NC_008261  974770  975552  +  783  hypothetical protein  YP_695275  decreased coverage  0.000195088  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0831  CDS  NC_008261  985331  985828  +  498  hypothetical protein  YP_695282  decreased coverage  0.00137006  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0843  CDS  NC_008261  998325  999833  +  1509  glycosy hydrolase family protein  YP_695293  decreased coverage  0.00330381  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0844  CDS  NC_008261  1000085  1000387  -  303  stress responsive alpha-beta barrel domain-containing protein  YP_695294  decreased coverage  0.000441195  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0871  CDS  NC_008261  1034911  1036083  -  1173  IS605 family transposase OrfB  YP_695321  decreased coverage  0.000854897  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0906  CDS  NC_008261  1069925  1070236  +  312  hypothetical protein  YP_695355  decreased coverage  0.00000115641  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0907  CDS  NC_008261  1070325  1070456  +  132  hypothetical protein  YP_695356  decreased coverage  0.000000513093  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0913  CDS  NC_008261  1076920  1077945  +  1026  glycosyl transferase, group 2 family protein  YP_695362  decreased coverage  0.00000688111  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0914  CDS  NC_008261  1077932  1079059  +  1128  capsular polysaccharide biosynthesis protein  YP_695363  decreased coverage  0.0000157523  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0926  CDS  NC_008261  1089077  1090141  -  1065  phage integrase family site specific recombinase  YP_695375  decreased coverage  0.00000719898  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0977  CDS  NC_008261  1126966  1127691  +  726  hypothetical protein  YP_695424  decreased coverage  0.000000125681  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_0998  CDS  NC_008261  1149913  1150716  -  804  CAAX amino terminal protease family protein  YP_695445  decreased coverage  0.00140172  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1002  CDS  NC_008261  1152107  1153333  -  1227  amidohydrolase family protein  YP_695448  decreased coverage  0.000070505  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1035  CDS  NC_008261  1185165  1186094  +  930  putative lipoprotein  YP_695481  decreased coverage  0.00631157  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1036  CDS  NC_008261  1186126  1186515  +  390  hypothetical protein  YP_695482  decreased coverage  0.00442924  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1058  CDS  NC_008261  1206647  1207432  +  786  putative Cof-like hydrolase  YP_695504  decreased coverage  0.00385652  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1065  CDS  NC_008261  1212579  1212926  +  348  hypothetical protein  YP_695511  decreased coverage  0.00199438  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1080  CDS  NC_008261  1231448  1232005  +  558  putative lipoprotein  YP_695526  decreased coverage  0.00000186744  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1081  CDS  NC_008261  1232192  1233535  -  1344  MATE efflux family protein  YP_695527  decreased coverage  0.000165796  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1082  CDS  NC_008261  1233775  1234200  -  426  MarR family transcriptional regulator  YP_695528  decreased coverage  0.0000105511  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1083  CDS  NC_008261  1234312  1234443  +  132  hypothetical protein  YP_695529  decreased coverage  0.00000235438  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1090  CDS  NC_008261  1246197  1246496  -  300  putative lipoprotein  YP_695536  decreased coverage  0.000114871  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1097  CDS  NC_008261  1252251  1252802  -  552  hypothetical protein  YP_695543  decreased coverage  0.00000321947  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1102  CDS  NC_008261  1258382  1259071  -  690  hypothetical protein  YP_695548  decreased coverage  0.000000717083  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1110  CDS  NC_008261  1266078  1267121  -  1044  acyltransferase family protein  YP_695556  decreased coverage  0.000203806  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1124  CDS  NC_008261  1287175  1287411  +  237  hypothetical protein  YP_695570  decreased coverage  0.0000595842  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1131  CDS  NC_008261  1292908  1293528  +  621  hypothetical protein  YP_695577  decreased coverage  0.000022535  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1135  CDS  NC_008261  1296514  1297332  -  819  nitroreductase family protein  YP_695581  decreased coverage  0.000059926  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1140  CDS  NC_008261  1301654  1302910  +  1257  sensor histidine kinase  YP_695586  decreased coverage  0.00613378  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1147  CDS  NC_008261  1310920  1311867  +  948  hypothetical protein  YP_695593  decreased coverage  0.0000856874  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1150  CDS  NC_008261  1315800  1316468  +  669  hypothetical protein  YP_695596  decreased coverage  0.0000534211  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1154  CDS  NC_008261  1321433  1322194  +  762  7-alpha-hydroxysteroid dehydrogenase  YP_695600  decreased coverage  0.000294561  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1158  CDS  NC_008261  1325410  1326423  +  1014  hypothetical protein  YP_695604  decreased coverage  0.000000697684  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1159  CDS  NC_008261  1326587  1327231  -  645  dedA protein  YP_695605  decreased coverage  0.00000684044  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1160  CDS  NC_008261  1327488  1328204  +  717  putative nitrite/sulfite reductase  YP_695606  decreased coverage  0.00000798999  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1195  CDS  NC_008261  1360293  1361198  +  906  sensor histidine kinase  YP_695641  decreased coverage  0.000111756  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1202  CDS  NC_008261  1367043  1368245  -  1203  triple helix repeat-containing collagen  YP_695648  decreased coverage  0.0000183423  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1216  CDS  NC_008261  1380631  1381590  +  960  hypothetical protein  YP_695662  decreased coverage  0.00255243  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1227  CDS  NC_008261  1396754  1398208  -  1455  monovalent cation:proton antiporter-2 (CPA2) family protein  YP_695673  decreased coverage  0.00112359  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1235  CDS  NC_008261  1404332  1406329  -  1998  potassium transporter  YP_695681  decreased coverage  0.000105426  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1242  CDS  NC_008261  1413590  1415098  -  1509  putatve dicarboxylate transporter  YP_695688  decreased coverage  0.0072618  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1276  CDS  NC_008261  1450370  1451179  +  810  dihydropteroate synthase  YP_695722  decreased coverage  0.000186218  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1277  CDS  NC_008261  1451192  1452013  +  822  dihydroneopterin aldolase/ 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase  YP_695723  decreased coverage  0.00023315  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1289  CDS  NC_008261  1463088  1464173  +  1086  nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase  YP_695735  decreased coverage  0.00800623  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1304  CDS  NC_008261  1481572  1482738  +  1167  hypothetical protein  YP_695750  decreased coverage  0.00427648  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1311  CDS  NC_008261  1488217  1489005  +  789  endonuclease/exonuclease/phosphatase family protein  YP_695757  decreased coverage  0.0000133914  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1346  CDS  NC_008261  1519004  1519474  -  471  MerR family transcriptional regulator  YP_695792  decreased coverage  0.0000136372  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1350  CDS  NC_008261  1523375  1524988  +  1614  phosphoenolpyruvate carboxylase  YP_695796  decreased coverage  0.00293216  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1366  CDS  NC_008261  1542781  1544133  -  1353  site-specific tyrosine recombinase XerC  YP_695812  decreased coverage  0.00000415693  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1378  CDS  NC_008261  1554219  1554446  +  228  acetyltransferase domain-containing protein  YP_695824  decreased coverage  0.000069907  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1379  CDS  NC_008261  1554567  1554989  -  423  acetyltransferase  YP_695825  decreased coverage  0.0000349378  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1380  CDS  NC_008261  1555038  1555154  -  117  hypothetical protein  YP_695826  decreased coverage  0.0000407741  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1395  CDS  NC_008261  1568567  1568764  +  198  hypothetical protein  YP_695840  decreased coverage  0.000000345714  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1396  CDS  NC_008261  1568823  1569725  -  903  hypothetical protein  YP_695841  decreased coverage  0.0000166179  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1397  CDS  NC_008261  1569982  1571244  +  1263  vanW-related protein  YP_695842  decreased coverage  0.0000158977  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1400  CDS  NC_008261  1572642  1574138  -  1497  amino acid permease family protein  YP_695845  decreased coverage  0.00116878  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1401  CDS  NC_008261  1574452  1575030  +  579  hypothetical protein  YP_695846  decreased coverage  0.0000620191  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1403  CDS  NC_008261  1576487  1577164  -  678  DNA-binding response regulator  YP_695848  decreased coverage  0.0000398651  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1407  CDS  NC_008261  1581901  1583889  -  1989  hypothetical protein  YP_695852  decreased coverage  0.00374356  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1414  CDS  NC_008261  1594664  1595638  -  975  RluA family pseudouridine synthase  YP_695859  decreased coverage  0.003829  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1423  CDS  NC_008261  1605611  1606021  -  411  thioesterase family protein  YP_695868  decreased coverage  0.0000396165  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1424  CDS  NC_008261  1606212  1606967  -  756  iron(III) ABC transporter, ATP-binding protein  YP_695869  decreased coverage  0.0000297439  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1429  CDS  NC_008261  1610739  1611737  -  999  cobalamin biosynthesis protein CbiG  YP_695874  decreased coverage  0.00979138  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1438  CDS  NC_008261  1618818  1619126  -  309  hypothetical protein  YP_695883  decreased coverage  0.0000863889  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1455  CDS  NC_008261  1637336  1638307  -  972  oxidoreductase family protein  YP_695898  decreased coverage  0.00550696  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1457  CDS  NC_008261  1641627  1642595  -  969  hypothetical protein  YP_695900  decreased coverage  0.000494254  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1458  CDS  NC_008261  1642704  1643195  -  492  hypothetical protein  YP_695901  decreased coverage  0.000609235  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1481  CDS  NC_008261  1679184  1680332  -  1149  hypothetical protein  YP_695924  decreased coverage  0.00190464  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1482  CDS  NC_008261  1680531  1681496  -  966  dihydrouridine synthase family protein  YP_695925  decreased coverage  0.000217324  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1490  CDS  NC_008261  1695920  1697308  -  1389  putative tetracycline resistance protein  YP_695933  decreased coverage  0.000919322  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1493  CDS  NC_008261  1700151  1702049  -  1899  hypothetical protein  YP_695936  decreased coverage  0.00418774  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1499  CDS  NC_008261  1710142  1711131  +  990  TPR repeat-containing protein  YP_695942  decreased coverage  0.00502134  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1500  CDS  NC_008261  1711478  1712086  -  609  putative lipoprotein  YP_695943  decreased coverage  0.000964611  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1501  CDS  NC_008261  1712535  1713005  -  471  SsrA-binding protein  YP_695944  decreased coverage  0.000046727  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
CPF_1503  CDS  NC_008261  1716146  1716376  -  231  preprotein translocase subunit SecG  YP_695946  decreased coverage  0.000000422851  n/a    Clostridium perfringens ATCC 13124  Bacteria 
 
 
-
 
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