57 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
CPS_0229  CDS  NC_003910  231565  232518  -  954  protoheme IX farnesyltransferase  YP_266996  decreased coverage  0.00331639  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_0230  CDS  NC_003910  232511  233572  -  1062  cytochrome oxidase assembly protein  YP_266997  decreased coverage  0.00422033  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_0382  CDS  NC_003910  382385  382519  -  135  hypothetical protein  YP_267140  decreased coverage  0.00464024  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_0551  CDS  NC_003910  549047  549334  +  288  DNA-binding protein Fis  YP_267309  decreased coverage  0.000274853  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_0586  CDS  NC_003910  588046  589188  +  1143  glycosyl transferase, group 1 family protein  YP_267336  decreased coverage  0.00449508  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_0624  CDS  NC_003910  621720  622109  +  390  30S ribosomal protein S11  YP_267374  decreased coverage  0.000665656  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_0625  CDS  NC_003910  622142  622762  +  621  ribosomal protein S4  YP_267375  decreased coverage  0.00138792  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_0808  CDS  NC_003910  826795  827652  -  858  hypothetical protein  YP_267557  decreased coverage  0.00976323  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_0835  CDS  NC_003910  848775  849827  +  1053  hypothetical protein  YP_267584  decreased coverage  0.00577651  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_0836  CDS  NC_003910  849896  850009  +  114  hypothetical protein  YP_267585  decreased coverage  0.0010678  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_0837  CDS  NC_003910  849906  850958  +  1053  hypothetical protein  YP_267586  decreased coverage  0.00478838  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_0839  CDS  NC_003910  853812  854672  +  861  sodium/bile acid symporter family protein  YP_267588  decreased coverage  0.00253549  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_0882  CDS  NC_003910  891459  891863  -  405  hypothetical protein  YP_267631  decreased coverage  0.00230157  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_0897  CDS  NC_003910  899224  899676  -  453  hypothetical protein  YP_267646  decreased coverage  0.000630285  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_1401  CDS  NC_003910  1440001  1441047  -  1047  hypothetical protein  YP_268144  decreased coverage  0.00461856  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_1894  CDS  NC_003910  1954605  1955387  +  783  putative daunorubicin resistance ABC transporter, permease protein  YP_268624  decreased coverage  0.00976323  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_1932  CDS  NC_003910  1991374  1992033  +  660  DNA-binding response regulator  YP_268662  decreased coverage  0.00601791  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_1941  CDS  NC_003910  2003968  2004687  -  720  cytochrome b561 family protein  YP_268671  decreased coverage  0.00760577  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_1942  CDS  NC_003910  2004716  2005018  -  303  hypothetical protein  YP_268672  decreased coverage  0.00191873  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_2171  CDS  NC_003910  2274046  2274327  -  282  hypothetical protein  YP_268896  decreased coverage  0.00528546  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_2179  CDS  NC_003910  2278789  2279244  -  456  acetyltransferase  YP_268904  decreased coverage  0.00330614  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_2258  tRNA  NC_003910  2356076  2356152  +  77  tRNA-Asp    decreased coverage  0.0012215  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_2260  tRNA  NC_003910  2356364  2356440  +  77  tRNA-Asp    decreased coverage  0.00104987  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_2261  tRNA  NC_003910  2356508  2356584  +  77  tRNA-Asp    decreased coverage  0.000972867  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_2297  CDS  NC_003910  2396853  2397599  +  747  3-oxoacyl-(acyl-carrier-protein) reductase  YP_269017  decreased coverage  0.0078554  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_2366  CDS  NC_003910  2463571  2464701  -  1131  lipase/acylhydrolase domain-containing protein  YP_269084  decreased coverage  0.00890776  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_2399  CDS  NC_003910  2515689  2516519  -  831  ICE-like protease  YP_269116  decreased coverage  0.00930458  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_2413  CDS  NC_003910  2524573  2525532  +  960  SecC motif-containing protein  YP_269129  decreased coverage  0.00422033  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_2495  CDS  NC_003910  2609672  2610286  +  615  putative glutathione S-transferase  YP_269211  decreased coverage  0.00712937  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_2638  CDS  NC_003910  2742493  2743014  +  522  methionine sulfoxide reductase A  YP_269352  decreased coverage  0.00490815  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_2686  CDS  NC_003910  2795001  2795399  -  399  hypothetical protein  YP_269400  decreased coverage  0.00693563  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_2739  CDS  NC_003910  2854807  2855409  -  603  putative outer membrane protein  YP_269451  decreased coverage  0.000665656  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_2772  CDS  NC_003910  2893040  2893270  +  231  hypothetical protein  YP_269484  decreased coverage  0.00553264  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_2811  CDS  NC_003910  2943792  2944454  -  663  putative solute/DNA competence effector  YP_269523  decreased coverage  0.00532714  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_2817  CDS  NC_003910  2947915  2949036  +  1122  putative regulatory protein  YP_269529  decreased coverage  0.00787345  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_2864  CDS  NC_003910  2991787  2992074  -  288  hypothetical protein  YP_269569  decreased coverage  0.00256232  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_2870  CDS  NC_003910  3002387  3002734  -  348  hypothetical protein  YP_269575  decreased coverage  0.00256232  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_2986  CDS  NC_003910  3127769  3128653  +  885  hypothetical protein  YP_269686  decreased coverage  0.0027982  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_3065  CDS  NC_003910  3199505  3200218  +  714  DNA-binding response regulator  YP_269763  decreased coverage  0.00140102  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_3090  CDS  NC_003910  3222881  3223348  +  468  ybaK/ebsC protein  YP_269788  decreased coverage  0.00342065  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_3116  CDS  NC_003910  3258755  3259546  +  792  PhzF family phenazine biosynthesis protein  YP_269813  decreased coverage  0.00210126  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_3165  CDS  NC_003910  3297666  3298181  +  516  RNA polymerase sigma factor  YP_269861  decreased coverage  0.00342065  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_3166  CDS  NC_003910  3298174  3298887  +  714  hypothetical protein  YP_269862  decreased coverage  0.00141395  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_3197  CDS  NC_003910  3328176  3328817  +  642  phosphoribosylglycinamide formyltransferase  YP_269893  decreased coverage  0.000983298  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_3301  CDS  NC_003910  3424629  3424862  -  234  hypothetical protein  YP_269977  decreased coverage  0.000197482  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_3319  CDS  NC_003910  3442399  3443211  -  813  enoyl-CoA hydratase/isomerase family protein  YP_269995  decreased coverage  0.00893563  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_3376  CDS  NC_003910  3509023  3510243  -  1221  putative lipoprotein  YP_270052  decreased coverage  0.00752899  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_3488  CDS  NC_003910  3627416  3628129  -  714  fatty acid metabolism regulator  YP_270162  decreased coverage  0.00186982  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_3553  CDS  NC_003910  3692001  3692117  +  117  hypothetical protein  YP_270227  decreased coverage  0.00467639  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_3557  CDS  NC_003910  3695399  3696343  +  945  ribose-phosphate pyrophosphokinase  YP_270231  decreased coverage  0.00334731  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_3899  CDS  NC_003910  4070342  4070821  +  480  acetyltransferase  YP_270561  decreased coverage  0.000678102  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_3900  CDS  NC_003910  4070889  4071533  -  645  adenylate kinase  YP_270562  decreased coverage  0.000914412  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_3998  CDS  NC_003910  4197953  4198177  -  225  phage integrase family site specific recombinase  YP_270656  decreased coverage  0.00426277  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_4070  CDS  NC_003910  4278231  4278395  +  165  hypothetical protein  YP_270725  decreased coverage  0.000232982  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_4134  CDS  NC_003910  4349468  4350505  -  1038  recA protein  YP_270789  decreased coverage  0.00773385  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_4784  tRNA  NC_003910  5066265  5066340  -  76  tRNA-Thr    decreased coverage  0.00018344  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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CPS_5006  CDS  NC_003910  5322377  5323549  +  1173  hypothetical protein  YP_271645  decreased coverage  0.00509945  n/a    Colwellia psychrerythraea 34H  Bacteria 
 
 
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