193 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Mmc1_0053  CDS  NC_008576  55693  57591  +  1899  transposase, IS4 family protein  YP_863988  decreased coverage  0.000750234  normal  0.48496  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0054  CDS  NC_008576  57757  59304  +  1548  methyl-accepting chemotaxis sensory transducer  YP_863989  decreased coverage  0.0000236941  normal  0.277951  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0122  CDS  NC_008576  126903  127619  -  717  hypothetical protein  YP_864055  decreased coverage  0.00000000345463  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0141  CDS  NC_008576  150542  151063  +  522  hypothetical protein  YP_864074  decreased coverage  0.0000000194352  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0248  CDS  NC_008576  281241  282290  +  1050  N-acetyl-gamma-glutamyl-phosphate reductase  YP_864181  decreased coverage  0.000000738561  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0249  CDS  NC_008576  282439  282696  +  258  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein  YP_864182  decreased coverage  0.0000000541345  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0274  CDS  NC_008576  312216  312671  +  456  hypothetical protein  YP_864207  decreased coverage  0.00000081165  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0275  CDS  NC_008576  312740  313471  -  732  short-chain dehydrogenase/reductase SDR  YP_864208  decreased coverage  0.00000379715  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0279  CDS  NC_008576  318313  319587  -  1275  metal dependent phosphohydrolase  YP_864212  decreased coverage  0.00000015793  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0323  CDS  NC_008576  375510  375869  -  360  IS66 Orf2 family protein  YP_864256  decreased coverage  0.000000316141  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0324  CDS  NC_008576  375869  376210  -  342  hypothetical protein  YP_864257  decreased coverage  0.000000316141  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0325    NC_008576  376296  376529  +  234      decreased coverage  0.00000018959  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0336  CDS  NC_008576  388146  388535  -  390  transmembrane region and signal peptide prediction  YP_864268  decreased coverage  0.0000000151366  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0344  CDS  NC_008576  397822  398307  +  486  XRE family transcriptional regulator  YP_864276  decreased coverage  0.000000026589  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0356  CDS  NC_008576  408250  409083  -  834  cytochrome c1  YP_864288  decreased coverage  0.0000188446  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0357  CDS  NC_008576  409103  410308  -  1206  cytochrome b/b6 domain-containing protein  YP_864289  decreased coverage  0.000177804  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0365  CDS  NC_008576  419701  419898  +  198  50S ribosomal protein L35P  YP_864297  decreased coverage  0.000000290331  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0366  CDS  NC_008576  420008  420361  +  354  50S ribosomal protein L20P  YP_864298  decreased coverage  0.000000702723  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0438  CDS  NC_008576  524786  526807  +  2022  membrane protease FtsH catalytic subunit  YP_864369  decreased coverage  0.00000747191  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0479  CDS  NC_008576  577410  578162  -  753  hypothetical protein  YP_864410  decreased coverage  0.0000314446  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0550  CDS  NC_008576  667332  668795  +  1464  hypothetical protein  YP_864481  decreased coverage  0.0000169921  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0608  CDS  NC_008576  737421  738404  -  984  hypothetical protein  YP_864535  decreased coverage  0.00667196  normal  0.552957  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0653  CDS  NC_008576  786252  787505  +  1254  RNA-directed DNA polymerase (Reverse transcriptase)  YP_864580  decreased coverage  0.008692  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0660  CDS  NC_008576  792312  792653  +  342  hypothetical protein  YP_864587  decreased coverage  0.00218186  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0661  CDS  NC_008576  792653  793012  +  360  IS66 Orf2 family protein  YP_864588  decreased coverage  0.00198496  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0678  CDS  NC_008576  813520  813879  -  360  IS66 Orf2 family protein  YP_864605  decreased coverage  0.000000411933  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0679  CDS  NC_008576  813879  814220  -  342  hypothetical protein  YP_864606  decreased coverage  0.000000391373  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0680  CDS  NC_008576  814351  816636  -  2286  hypothetical protein  YP_864607  decreased coverage  0.000857964  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0696  CDS  NC_008576  832963  833211  +  249  Na+/H+ antiporter-like protein  YP_864623  decreased coverage  0.00158966  normal  0.51761  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0697  CDS  NC_008576  833321  833974  -  654  FkbM family methyltransferase  YP_864624  decreased coverage  0.00286744  normal  0.545392  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0700  CDS  NC_008576  837559  838407  +  849  hypothetical protein  YP_864627  decreased coverage  0.00453627  normal  0.367447  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0747  CDS  NC_008576  923947  925245  -  1299  cell division protein FtsZ  YP_864674  decreased coverage  0.00000100663  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0778  CDS  NC_008576  961557  962120  +  564  invasion associated locus B family protein  YP_864705  decreased coverage  0.0000000182152  normal  0.361158  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0779  CDS  NC_008576  962203  964446  +  2244  polypeptide-transport-associated domain-containing protein  YP_864706  decreased coverage  0.000230796  normal  0.181114  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0802  CDS  NC_008576  1000576  1002564  +  1989  hypothetical protein  YP_864728  decreased coverage  0.00000629904  normal  0.50337  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0844  CDS  NC_008576  1051998  1054076  +  2079  translation elongation factor 2 (EF-2/EF-G)  YP_864769  normal  0.0265516  decreased coverage  0.0000171204  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0845  CDS  NC_008576  1054110  1055300  +  1191  elongation factor Tu  YP_864770  hitchhiker  0.000420071  decreased coverage  0.0000129254  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0846  CDS  NC_008576  1055334  1055645  +  312  SSU ribosomal protein S10P  YP_864771  hitchhiker  0.00000264723  decreased coverage  0.00000947215  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0847  CDS  NC_008576  1055769  1056413  +  645  50S ribosomal protein L3P  YP_864772  hitchhiker  0.000000479377  decreased coverage  0.0000116579  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0848  CDS  NC_008576  1056437  1057060  +  624  50S ribosomal protein L4P  YP_864773  hitchhiker  0.0000392239  decreased coverage  0.0000122182  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0849  CDS  NC_008576  1057057  1057356  +  300  50S ribosomal protein L23P  YP_864774  hitchhiker  0.00000828313  decreased coverage  0.0000112275  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0850  CDS  NC_008576  1057380  1058213  +  834  50S ribosomal protein L2  YP_864775  hitchhiker  0.00104266  decreased coverage  0.0000130499  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0867  CDS  NC_008576  1064530  1065858  +  1329  protein translocase subunit secY/sec61 alpha  YP_864792  decreased coverage  0.000000152006  hitchhiker  0.00837403  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0868  CDS  NC_008576  1065911  1066024  +  114  50S ribosomal protein L36P  YP_864793  decreased coverage  0.0000000000807899  hitchhiker  0.00596219  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0948  CDS  NC_008576  1165682  1166245  +  564  translation elongation factor P (EF-P)  YP_864872  hitchhiker  0.00103286  decreased coverage  0.000108298  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0949  CDS  NC_008576  1166249  1167202  +  954  tRNA synthetase, class II (D, K and N)  YP_864873  hitchhiker  0.000776878  decreased coverage  0.000118121  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_0950  CDS  NC_008576  1167420  1167977  +  558  redoxin domain-containing protein  YP_864874  hitchhiker  0.0000000626081  decreased coverage  0.000095719  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1005  CDS  NC_008576  1237060  1237443  +  384  hypothetical protein  YP_864929  decreased coverage  0.0000344414  normal  0.889606  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1011  CDS  NC_008576  1241028  1241426  +  399  hypothetical protein  YP_864935  decreased coverage  0.0000040249  normal  0.898797  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1106  CDS  NC_008576  1385728  1386186  +  459  cytochrome c, class II  YP_865030  decreased coverage  0.00108735  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1165  CDS  NC_008576  1465795  1466976  +  1182  acetyl-CoA acetyltransferase  YP_865082  decreased coverage  0.000755496  normal  0.122862  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1187  CDS  NC_008576  1484510  1485121  -  612  hypothetical protein  YP_865104  normal  0.737535  decreased coverage  0.0000732345  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1188  CDS  NC_008576  1485118  1485492  -  375  ferredoxin  YP_865105  normal  1  decreased coverage  0.0000641343  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1189  CDS  NC_008576  1485536  1486081  -  546  NifZ family protein  YP_865106  normal  1  decreased coverage  0.0000688158  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1190  CDS  NC_008576  1486062  1487246  -  1185  homocitrate synthase  YP_865107  normal  1  decreased coverage  0.000085234  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1191  CDS  NC_008576  1487292  1487609  -  318  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein  YP_865108  normal  1  decreased coverage  0.0000682014  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1192  CDS  NC_008576  1487654  1488103  -  450  hypothetical protein  YP_865109  normal  1  decreased coverage  0.0000719142  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1193  CDS  NC_008576  1488146  1488586  -  441  dinitrogenase iron-molybdenum cofactor biosynthesis  YP_865110  normal  1  decreased coverage  0.0000688158  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1194  CDS  NC_008576  1488591  1490000  -  1410  nitrogenase molybdenum-iron cofactor biosynthesis protein NifN  YP_865111  normal  0.620577  decreased coverage  0.0000992297  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1195  CDS  NC_008576  1489993  1491378  -  1386  nitrogenase MoFe cofactor biosynthesis protein NifE  YP_865112  hitchhiker  0.00211602  decreased coverage  0.000102786  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1196  CDS  NC_008576  1491905  1493110  +  1206  hypothetical protein  YP_865113  unclonable  0.00000000270508  decreased coverage  0.000095719  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1197  CDS  NC_008576  1493232  1493531  -  300  hypothetical protein  YP_865114  normal  0.0178983  decreased coverage  0.0000807551  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1205  CDS  NC_008576  1502128  1504302  +  2175  adenylate/guanylate cyclase  YP_865122  decreased coverage  0.000104961  normal  0.0234559  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1361  CDS  NC_008576  1656197  1657018  +  822  hypothetical protein  YP_865278  decreased coverage  0.0000844893  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1374  CDS  NC_008576  1667686  1667928  +  243  hypothetical protein  YP_865291  decreased coverage  0.000057164  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1412  CDS  NC_008576  1715650  1716684  +  1035  rod shape-determining protein MreB  YP_865329  decreased coverage  0.0000000497097  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1450  CDS  NC_008576  1764219  1764827  -  609  hypothetical protein  YP_865365  decreased coverage  0.0000395301  normal  0.21566  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1451  CDS  NC_008576  1765149  1768007  -  2859  hypothetical protein  YP_865366  decreased coverage  0.00912397  normal  0.310535  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1466  CDS  NC_008576  1788353  1789138  +  786  response regulator receiver protein  YP_865381  decreased coverage  0.0000484673  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1467  CDS  NC_008576  1789135  1790946  -  1812  ABC transporter related  YP_865382  decreased coverage  0.00000245046  normal  0.820859  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1489  CDS  NC_008576  1820382  1822571  +  2190  multi-sensor signal transduction histidine kinase  YP_865404  normal  1  decreased coverage  0.00567966  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1490  CDS  NC_008576  1822568  1823140  -  573  hypothetical protein  YP_865405  normal  0.843159  decreased coverage  0.00367524  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1491  CDS  NC_008576  1823262  1823972  +  711  two component transcriptional regulator  YP_865406  normal  1  decreased coverage  0.00391258  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1492  CDS  NC_008576  1823969  1825843  +  1875  multi-sensor signal transduction histidine kinase  YP_865407  normal  0.411872  decreased coverage  0.00494446  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1495  CDS  NC_008576  1828593  1829711  +  1119  molybdopterin synthase subunit MoaE  YP_865410  normal  1  decreased coverage  0.00326652  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1496  CDS  NC_008576  1829729  1830934  +  1206  molybdopterin molybdochelatase  YP_865411  normal  1  decreased coverage  0.00391258  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1524  CDS  NC_008576  1868991  1869479  +  489  rhodanese domain-containing protein  YP_865439  decreased coverage  0.00000000164896  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1532  CDS  NC_008576  1881670  1883910  +  2241  Sel1 domain-containing protein  YP_865447  decreased coverage  0.00292625  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1573  CDS  NC_008576  1937723  1938826  +  1104  HflK protein  YP_865488  decreased coverage  0.000000427817  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1574  CDS  NC_008576  1938840  1939742  +  903  HflC protein  YP_865489  decreased coverage  0.00000132487  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1599  CDS  NC_008576  1974183  1976174  -  1992  secreted hydrolase-like protein  YP_865514  decreased coverage  0.000036978  normal  0.453344  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1642  CDS  NC_008576  2039130  2039570  -  441  cache type 2 domain-containing protein  YP_865557  decreased coverage  0.0000155098  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1679  CDS  NC_008576  2081806  2082402  +  597  alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen  YP_865594  decreased coverage  0.00000912129  normal  0.728199  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1728  CDS  NC_008576  2133115  2135067  +  1953  citrate transporter  YP_865642  decreased coverage  0.0000373143  normal  0.108041  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1731  CDS  NC_008576  2138376  2139182  +  807  ModE family transcriptional regulator  YP_865645  decreased coverage  0.0000000816631  normal  0.0463603  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1735  CDS  NC_008576  2144069  2146288  -  2220  cyclic nucleotide-binding protein  YP_865649  normal  1  decreased coverage  0.00308523  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1736  CDS  NC_008576  2146631  2146819  +  189  hypothetical protein  YP_865650  normal  1  decreased coverage  0.00537203  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1737  CDS  NC_008576  2146856  2147911  +  1056  cobalamin synthesis protein, P47K  YP_865651  normal  1  decreased coverage  0.00683166  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1740  CDS  NC_008576  2150656  2151258  +  603  DNA replication and repair protein RecR  YP_865654  decreased coverage  0.000000762461  normal  0.0361777  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1754  CDS  NC_008576  2165761  2167806  +  2046  membrane-bound proton-translocating pyrophosphatase  YP_865668  decreased coverage  0.00000719333  normal  0.172901  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1775  CDS  NC_008576  2193807  2194010  +  204  SSU ribosomal protein S21P  YP_865689  unclonable  0.00000000000600029  decreased coverage  0.0000932106  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1776  CDS  NC_008576  2194201  2197155  -  2955  ribonuclease E  YP_865690  unclonable  0.0000943072  decreased coverage  0.00020345  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1777  CDS  NC_008576  2197533  2198519  +  987  ribosomal large subunit pseudouridine synthase C  YP_865691  hitchhiker  0.00553261  decreased coverage  0.000101871  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1778  CDS  NC_008576  2198516  2199184  +  669  HAD family hydrolase  YP_865692  normal  0.0979226  decreased coverage  0.0000822361  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1794  CDS  NC_008576  2217361  2219130  +  1770  periplasmic sensor signal transduction histidine kinase  YP_865708  decreased coverage  0.0000132214  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1817  CDS  NC_008576  2249483  2252737  -  3255  acriflavin resistance protein  YP_865731  decreased coverage  0.00322061  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1818  CDS  NC_008576  2252730  2253788  -  1059  RND family efflux transporter MFP subunit  YP_865732  decreased coverage  0.0000000224471  normal  0.900766  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1836  CDS  NC_008576  2279491  2279904  +  414  hypothetical protein  YP_865750  decreased coverage  0.00093495  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1849  CDS  NC_008576  2295599  2296138  +  540  outer membrane chaperone Skp (OmpH)  YP_865763  decreased coverage  0.0000000011443  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
-
 
Mmc1_1855  CDS  NC_008576  2300694  2301068  +  375  thioredoxin  YP_865769  decreased coverage  0.000000000364045  normal  1  Magnetococcus sp. MC-1  Bacteria 
 
 
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