94 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
VEA_000033  CDS  NC_013457  35029  38085  +  3057  exonuclease SbcC  YP_003287185  decreased coverage  0.00466596  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000034  CDS  NC_013457  38176  39090  -  915  transcriptional regulator LysR family protein  YP_003287186  decreased coverage  0.000511263  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000055  CDS  NC_013457  61459  63090  -  1632  methyl-accepting chemotaxis protein  YP_003287208  decreased coverage  0.000458726  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000129  CDS  NC_013457  145000  145662  +  663  transcriptional regulator  YP_003287282  decreased coverage  0.000000110935  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000158  CDS  NC_013457  169200  171281  +  2082  TonB-dependent heme and hemoglobin receptor HutA  YP_003287311  decreased coverage  0.00497898  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000188  CDS  NC_013457  201641  202660  -  1020  membrane protein TerC  YP_003287341  decreased coverage  0.0000121417  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000189  CDS  NC_013457  203287  205023  -  1737  5'-nucleotidase  YP_003287342  decreased coverage  0.0000310598  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000394  CDS  NC_013457  446559  448262  +  1704  acetolactate synthase catabolic  YP_003287547  decreased coverage  0.000407166  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000498  CDS  NC_013457  597032  598084  -  1053  2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha  YP_003287649  decreased coverage  0.000027124  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000499  CDS  NC_013457  598546  599538  +  993  outer membrane protein A precursor  YP_003287650  decreased coverage  0.0000000410155  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000579  CDS  NC_013457  676529  677242  +  714  putative DNA-binding response regulator  YP_003287730  decreased coverage  0.00151616  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000595  CDS  NC_013457  690100  691269  -  1170  D-alanyl-D-alanine carboxypeptidase  YP_003287746  decreased coverage  0.0000000867195  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000711  CDS  NC_013457  826582  827652  -  1071  enoyl-[acyl-carrier-protein] reductase (FMN)  YP_003287862  decreased coverage  0.00491947  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000755  CDS  NC_013457  868443  869423  -  981  outer membrane protein A precursor  YP_003287906  decreased coverage  0.000000475354  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000826  CDS  NC_013457  951231  951659  +  429  hypothetical protein  YP_003287977  decreased coverage  0.00006699  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000827  CDS  NC_013457  951726  952451  -  726  zn-dependent hydrolase  YP_003287978  decreased coverage  0.000173508  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000828  CDS  NC_013457  952763  954685  +  1923  biosynthetic arginine decarboxylase  YP_003287979  decreased coverage  0.00030199  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000829  CDS  NC_013457  954687  955607  +  921  agmatinase  YP_003287980  decreased coverage  0.000138178  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000851  CDS  NC_013457  977105  977770  -  666  probable transcriptional regulator SyrB  YP_003288002  decreased coverage  0.00675785  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_000940  CDS  NC_013457  1071614  1072954  -  1341  Na+ driven multidrug efflux pump  YP_003288090  decreased coverage  0.000926882  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001077  CDS  NC_013457  1225154  1226908  +  1755  hypothetical protein  YP_003288227  decreased coverage  0.00935089  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001120  CDS  NC_013457  1286031  1286924  +  894  hypothetical protein  YP_003288270  decreased coverage  0.000000254312  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001128  CDS  NC_013457  1294145  1295125  -  981  rhodanese domain protein  YP_003288278  decreased coverage  0.0000000331641  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001333  CDS  NC_013457  1518995  1519900  -  906  hypothetical protein  YP_003288481  decreased coverage  0.0000132961  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001349  CDS  NC_013457  1532713  1533174  +  462  transcriptional regulator LuxT  YP_003288497  decreased coverage  0.00000000649622  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001350  CDS  NC_013457  1533366  1534148  -  783  ABC-type hemin transport system ATPase component  YP_003288498  decreased coverage  0.00000143522  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001373  CDS  NC_013457  1554478  1554708  +  231  PAS factor  YP_003288521  decreased coverage  0.00000000135074  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001374  CDS  NC_013457  1554791  1555168  -  378  4-carboxymuconolactone decarboxylase  YP_003288522  decreased coverage  0.00000000210016  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001431  CDS  NC_013457  1623262  1624455  +  1194  multidrug resistance protein D  YP_003288579  decreased coverage  0.00000114311  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001506  CDS  NC_013457  1698509  1699801  +  1293  ATP-dependent RNA helicase  YP_003288654  decreased coverage  0.000291883  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001610  CDS  NC_013456  17  325  +  309  hypothetical protein  YP_003284238  decreased coverage  0.00000183596  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001645  CDS  NC_013456  39777  41189  +  1413  pyruvate kinase  YP_003284273  decreased coverage  0.0000413201  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001646  CDS  NC_013456  41389  42033  +  645  transcriptional regulator LuxZ  YP_003284274  decreased coverage  0.00000706033  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001752  CDS  NC_013456  138931  139173  -  243  hypothetical protein  YP_003284380  decreased coverage  0.00000892974  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001764  CDS  NC_013456  148758  150746  -  1989  nucleoside-diphosphate sugar epimerase/dehydratase  YP_003284392  decreased coverage  0.0000353165  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_001903  CDS  NC_013456  293322  295151  -  1830  GTP-binding protein TypA/BipA  YP_003284531  decreased coverage  0.00233609  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002107  CDS  NC_013456  529066  531594  +  2529  adenylate cyclase  YP_003284735  decreased coverage  0.000191458  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002193  CDS  NC_013456  635616  635912  -  297  NA-binding protein Fis  YP_003284821  decreased coverage  0.000234513  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002194  CDS  NC_013456  635936  636799  -  864  tRNA dihydrouridine synthase B  YP_003284822  decreased coverage  0.000238553  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002195  CDS  NC_013456  637044  637931  -  888  ribosomal protein L11 methyltransferase  YP_003284823  decreased coverage  0.00271176  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002262  CDS  NC_013456  713680  714660  +  981  HflC protein  YP_003284890  decreased coverage  0.00114995  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002328  CDS  NC_013456  784126  785226  +  1101  3-dehydroquinate synthase  YP_003284955  decreased coverage  0.00000221553  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002429  CDS  NC_013456  901491  902591  +  1101  hypothetical protein  YP_003285056  decreased coverage  0.0000155201  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002483  CDS  NC_013456  964135  964713  +  579  hypothetical protein  YP_003285110  decreased coverage  0.000000288403  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002493  CDS  NC_013456  973799  974764  +  966  sigma factor RpoE negative regulatory protein RseB precursor  YP_003285120  decreased coverage  0.0000011568  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002494  CDS  NC_013456  974761  975231  +  471  sigma factor RpoE regulatory protein RseC  YP_003285121  decreased coverage  0.000000204046  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002596  CDS  NC_013456  1102531  1103718  +  1188  tyrosyl-tRNA synthetase  YP_003285223  decreased coverage  0.0000034927  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002628  CDS  NC_013456  1137285  1138568  +  1284  nucleoside permease NupC  YP_003285255  decreased coverage  0.0000361858  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002707  CDS  NC_013456  1235354  1236640  +  1287  Na(+)-translocating NADH-quinone reductase subunit A  YP_003285334  decreased coverage  0.00000207238  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002708  CDS  NC_013456  1236646  1237890  +  1245  Na(+)-translocating NADH-quinone reductase subunit B  YP_003285335  decreased coverage  0.000022376  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002747  CDS  NC_013456  1274818  1275663  +  846  translation elongation factor Ts  YP_003285374  decreased coverage  0.000000973884  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002748  CDS  NC_013456  1275811  1276536  +  726  uridylate kinase  YP_003285375  decreased coverage  0.000000503391  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002831  CDS  NC_013456  1360260  1361147  +  888  flagellar synthesis regulator FleN  YP_003285458  decreased coverage  0.000000517997  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002832  CDS  NC_013456  1361140  1361874  +  735  RNA polymerase sigma factor for flagellar operon  YP_003285459  decreased coverage  0.000000415282  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002833  CDS  NC_013456  1361908  1362288  +  381  chemotaxis regulator CheY  YP_003285460  decreased coverage  0.00000239201  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_002885  CDS  NC_013456  1416394  1418499  +  2106  DNA polymerase III subunits gamma and tau  YP_003285512  decreased coverage  0.00493528  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003067  CDS  NC_013456  1628481  1630937  +  2457  hypothetical protein  YP_003285692  decreased coverage  0.000138455  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003069  CDS  NC_013456  1631889  1632089  +  201  hypothetical protein  YP_003285694  decreased coverage  0.000000140328  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003080  CDS  NC_013456  1643509  1643661  +  153  hypothetical protein  YP_003285705  decreased coverage  0.0000000936136  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003111  CDS  NC_013456  1681431  1684151  +  2721  DNA gyrase subunit A  YP_003285736  decreased coverage  0.00046231  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003356  CDS  NC_013456  1914386  1915201  +  816  multidrug resistance efflux pump  YP_003285981  decreased coverage  0.000276837  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003401  CDS  NC_013456  1959898  1960251  -  354  hypothetical protein  YP_003286026  decreased coverage  0.00000284049  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003402  CDS  NC_013456  1960419  1961033  -  615  outer membrane protein  YP_003286027  decreased coverage  0.00000500846  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003408  CDS  NC_013456  1985945  1987138  -  1194  hypothetical protein  YP_003286033  decreased coverage  0.00000270562  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003409  CDS  NC_013456  1987301  1988704  -  1404  methyl-accepting chemotaxis protein  YP_003286034  decreased coverage  0.0000050033  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003410  CDS  NC_013456  1988888  1989067  +  180  acylphosphate phosphohydrolase  YP_003286035  decreased coverage  0.00000012499  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003411  CDS  NC_013456  1989071  1989400  -  330  tRNA 2-thiouridine synthesizing protein E  YP_003286036  decreased coverage  0.000000175074  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003412  CDS  NC_013456  1989809  1990183  +  375  hypothetical protein  YP_003286037  decreased coverage  0.000000178508  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003429  CDS  NC_013456  2009497  2009970  +  474  free methionine-(R)-sulfoxide reductase fRMsr  YP_003286054  decreased coverage  0.000000333189  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003430  CDS  NC_013456  2010068  2010694  +  627  ProQ protein  YP_003286055  decreased coverage  0.000000470709  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003483  CDS  NC_013456  2064662  2065432  +  771  spermidine putrescine ABC transporter permease component PotC  YP_003286108  decreased coverage  0.000000553951  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003726  CDS  NC_013456  2338795  2341830  -  3036  Fe-S oxidoreductase  YP_003286351  decreased coverage  0.000740961  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003748  CDS  NC_013456  2368612  2369706  -  1095  phosphoserine aminotransferase  YP_003286373  decreased coverage  0.000403909  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003763  CDS  NC_013456  2383718  2385253  +  1536  TrkA Potassium channel-family protein  YP_003286388  decreased coverage  0.0000044665  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003822  CDS  NC_013456  2452079  2452984  -  906  manganese-dependent inorganic pyrophosphatase  YP_003286447  decreased coverage  0.00000209246  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003838  CDS  NC_013456  2468810  2469304  +  495  peptidyl-prolyl cis-trans isomerase PpiB  YP_003286463  decreased coverage  0.000000299744  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003851  CDS  NC_013456  2481288  2482889  -  1602  malate Na(+) symporter  YP_003286476  decreased coverage  0.00269434  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003866  CDS  NC_013456  2495931  2496800  -  870  hypothetical protein  YP_003286491  decreased coverage  0.00000088454  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003896  CDS  NC_013456  2529887  2531524  -  1638  methyl-accepting chemotaxis protein  YP_003286521  decreased coverage  0.000288698  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003928  CDS  NC_013456  2563317  2564054  +  738  tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase  YP_003286553  decreased coverage  0.000490734  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003929  CDS  NC_013456  2564140  2565111  +  972  tRNA (5-methoxyuridine) 34 synthase  YP_003286554  decreased coverage  0.00210133  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003937  CDS  NC_013456  2575651  2576442  -  792  S-adenosylmethionine-dependent methyltransferase functionally coupled to the MukBEF chromosome partitioning mechanism  YP_003286562  decreased coverage  0.000294838  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003950  CDS  NC_013456  2590028  2590276  +  249  protein YciN  YP_003286575  decreased coverage  0.0000828356  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003951  CDS  NC_013456  2590340  2591620  -  1281  5-Enolpyruvylshikimate-3-phosphate synthase  YP_003286576  decreased coverage  0.000960986  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003954  CDS  NC_013456  2593131  2593832  +  702  arginine-tRNA-protein transferase  YP_003286579  decreased coverage  0.000149764  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_003955  CDS  NC_013456  2593914  2594132  +  219  translation initiation factor 1  YP_003286580  decreased coverage  0.0000363825  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_004262  CDS  NC_013456  2941129  2941599  -  471  6,7-dimethyl-8-ribityllumazine synthase  YP_003286885  decreased coverage  0.000106153  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_004263  CDS  NC_013456  2941769  2942878  -  1110  3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II  YP_003286886  decreased coverage  0.0000943386  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_004264  CDS  NC_013456  2943052  2943705  -  654  riboflavin synthase alpha chain  YP_003286887  decreased coverage  0.000121594  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_004265  CDS  NC_013456  2943714  2944841  -  1128  diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase  YP_003286888  decreased coverage  0.000582374  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_004447  CDS  NC_013456  3157386  3158819  -  1434  sodium/alanine symporter  YP_003287070  decreased coverage  0.00130712  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_004461  CDS  NC_013456  3171147  3171863  +  717  aerobic respiration control protein ArcA  YP_003287084  decreased coverage  0.00000105121  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_004504  CDS  NC_013456  3229046  3229711  +  666  putative hemolysin  YP_003287127  decreased coverage  0.000000407403  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
VEA_rna052  rRNA  NC_013456  621139  622684  +  1546  16S ribosomal RNA    decreased coverage  0.0000100812  n/a    Vibrio sp. Ex25  Bacteria 
 
 
-
 
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