4398 genes were found for organism Pectobacterium carotovorum subsp. carotovorum PC1



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
PC1_0001  CDS  NC_012917  72  1469  1398  chromosomal replication initiation protein  YP_003015600  decreased coverage  0.00156244  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0002  CDS  NC_012917  1474  2574  1101  DNA polymerase III subunit beta  YP_003015601  hitchhiker  0.00514307  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0003  CDS  NC_012917  2624  3709  1086  recombination protein F  YP_003015602  normal  0.279219  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0004  CDS  NC_012917  3728  6145  2418  DNA gyrase subunit B  YP_003015603  normal  0.777143  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0005  CDS  NC_012917  6488  7678  1191  major facilitator superfamily MFS_1  YP_003015604  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0006  CDS  NC_012917  7843  8211  369  glutathione-dependent formaldehyde-activating GFA  YP_003015605  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0007  CDS  NC_012917  8261  10171  1911  methyl-accepting chemotaxis sensory transducer with Cache sensor  YP_003015606  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0008  CDS  NC_012917  10548  11561  1014  transcriptional regulator, LacI family  YP_003015607  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0009  CDS  NC_012917  11776  12081  306  phosphotransferase system lactose/cellobiose-specific IIB subunit  YP_003015608  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0010  CDS  NC_012917  12098  13411  1314  PTS system, lactose/cellobiose family IIC subunit  YP_003015609  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0011  CDS  NC_012917  13401  13727  327  phosphotransferase system PTS lactose/cellobiose-specific IIA subunit  YP_003015610  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0012  CDS  NC_012917  13760  15202  1443  glycoside hydrolase family 1  YP_003015611  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0013  CDS  NC_012917  15358  16173  816  sugar phosphatase  YP_003015612  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0014  CDS  NC_012917  16319  17215  897  transcriptional regulator, LysR family  YP_003015613  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0015  CDS  NC_012917  17358  18908  1551  extracellular solute-binding protein family 5  YP_003015614  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0016  CDS  NC_012917  18978  19862  885  dihydrodipicolinate synthetase  YP_003015615  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0017  CDS  NC_012917  19965  20918  954  Inosine/uridine-preferring nucleoside hydrolase  YP_003015616  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0018  CDS  NC_012917  20920  21927  1008  Inosine/uridine-preferring nucleoside hydrolase  YP_003015617  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0019  CDS  NC_012917  21927  22904  978  binding-protein-dependent transport systems inner membrane component  YP_003015618  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0020  CDS  NC_012917  22901  23809  909  binding-protein-dependent transport systems inner membrane component  YP_003015619  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0021  CDS  NC_012917  23825  25657  1833  ABC transporter related  YP_003015620  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0022  CDS  NC_012917  25733  25990  258  hypothetical protein  YP_003015621  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0023  CDS  NC_012917  26163  26963  801  aliphatic sulfonates transport ATP-binding subunit  YP_003015622  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0024  CDS  NC_012917  26960  27754  795  binding-protein-dependent transport systems inner membrane component  YP_003015623  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0025  CDS  NC_012917  27765  28907  1143  alkanesulfonate monooxygenase  YP_003015624  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0026  CDS  NC_012917  28966  29988  1023  alkanesulfonate transporter substrate-binding subunit  YP_003015625  normal  0.778935  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0027  CDS  NC_012917  30438  31883  1446  major facilitator superfamily MFS_1  YP_003015626  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0028  CDS  NC_012917  32221  32544  324  phosphotransferase system lactose/cellobiose-specific IIB subunit  YP_003015627  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0029  CDS  NC_012917  32541  33863  1323  PTS system, lactose/cellobiose family IIC subunit  YP_003015628  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0030  CDS  NC_012917  33889  35301  1413  Beta-glucosidase  YP_003015629  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0031  CDS  NC_012917  35464  35721  258  hypothetical protein  YP_003015630  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0032  CDS  NC_012917  35934  37238  1305  hypothetical protein  YP_003015631  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0033  CDS  NC_012917  37274  37666  393  hypothetical protein  YP_003015632  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0034  CDS  NC_012917  38051  38464  414  heat shock protein IbpA  YP_003015633  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0035  CDS  NC_012917  38620  39069  450  heat shock chaperone IbpB  YP_003015634  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0036  CDS  NC_012917  39247  40905  1659  hypothetical protein  YP_003015635  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0037  CDS  NC_012917  41490  42902  1413  anion transporter  YP_003015636  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0038  CDS  NC_012917  43093  44721  1629  sensory histidine kinase DcuS  YP_003015637  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0039  CDS  NC_012917  44714  45436  723  DNA-binding transcriptional activator DcuR  YP_003015638  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0040  CDS  NC_012917  45514  45918  405  hypothetical protein  YP_003015639  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0041  CDS  NC_012917  45955  46509  555  flavodoxin/nitric oxide synthase  YP_003015640  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0042  CDS  NC_012917  46614  47012  399  transcriptional regulator, HxlR family  YP_003015641  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0043  CDS  NC_012917  47050  48393  1344  Citrate carrier protein  YP_003015642  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0044  CDS  NC_012917  49825  51432  1608  extracellular solute-binding protein family 5  YP_003015643  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0045  CDS  NC_012917  51666  52685  1020  dipeptide transporter permease DppB  YP_003015644  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0046  CDS  NC_012917  52699  53601  903  dipeptide transporter  YP_003015645  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0047  CDS  NC_012917  53615  54595  981  dipeptide transporter ATP-binding subunit  YP_003015646  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0048  CDS  NC_012917  54592  55602  1011  dipeptide transporter ATP-binding subunit  YP_003015647  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0049    NC_012917  55696  55977  282      normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0050  CDS  NC_012917  56142  56579  438  hypothetical protein  YP_003015648  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0051  CDS  NC_012917  56584  60897  4314  YD repeat protein  YP_003015649  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0052  CDS  NC_012917  60909  61316  408  hypothetical protein  YP_003015650  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0053  CDS  NC_012917  61325  63178  1854  type VI secretion system Vgr family protein  YP_003015651  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0054  CDS  NC_012917  63269  63787  519  type VI secretion system effector, Hcp1 family  YP_003015652  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0055  CDS  NC_012917  64344  65594  1251  valine--pyruvate transaminase  YP_003015653  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0056  CDS  NC_012917  65988  67196  1209  hypothetical protein  YP_003015654  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0057  CDS  NC_012917  67360  68271  912  hypothetical protein  YP_003015655  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0058  CDS  NC_012917  68345  69790  1446  altronate oxidoreductase  YP_003015656  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0059  CDS  NC_012917  69804  70826  1023  Alcohol dehydrogenase GroES domain protein  YP_003015657  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0060  CDS  NC_012917  70969  71883  915  transcriptional regulator, GntR family  YP_003015658  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0061  CDS  NC_012917  72097  73446  1350  major facilitator superfamily MFS_1  YP_003015659  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0062  CDS  NC_012917  73711  75489  1779  gamma-glutamyltransferase  YP_003015660  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0063  CDS  NC_012917  75526  75849  324  hypothetical protein  YP_003015661  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0064  CDS  NC_012917  75934  76398  465  hypothetical protein  YP_003015662  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0065  CDS  NC_012917  76395  81566  5172  filamentous hemagglutinin family outer membrane protein  YP_003015663  normal  0.290227  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0066  CDS  NC_012917  81606  83288  1683  Polypeptide-transport-associated domain protein ShlB-type  YP_003015664  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0067  CDS  NC_012917  83546  84889  1344  aminotransferase class-III  YP_003015665  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0068  CDS  NC_012917  84922  86283  1362  ethanolamine transproter  YP_003015666  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0069  CDS  NC_012917  86542  87549  1008  aminoglycoside phosphotransferase  YP_003015667  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0070  CDS  NC_012917  87722  88780  1059  transcriptional regulator, AraC family  YP_003015668  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0071  CDS  NC_012917  89012  90043  1032  hypothetical protein  YP_003015669  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0072  CDS  NC_012917  90232  91119  888  hypothetical protein  YP_003015670  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0073  CDS  NC_012917  91166  94660  3495  cellulose synthase subunit BcsC  YP_003015671  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0074  CDS  NC_012917  94642  95757  1116  endo-1,4-D-glucanase  YP_003015672  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0075  CDS  NC_012917  95764  98082  2319  cellulose synthase regulator protein  YP_003015673  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0076  CDS  NC_012917  98157  100856  2700  cellulose synthase catalytic subunit  YP_003015674  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0077  CDS  NC_012917  100853  101590  738  cellulose synthase operon protein YhjQ  YP_003015675  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0078  CDS  NC_012917  101593  101802  210  hypothetical protein  YP_003015676  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0079  CDS  NC_012917  102133  103737  1605  cellulose biosynthesis protein BcsE  YP_003015677  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0080  CDS  NC_012917  103734  103952  219  hypothetical protein  YP_003015678  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0081  CDS  NC_012917  103954  105615  1662  cellulose synthase operon protein YhjU  YP_003015679  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0082  CDS  NC_012917  105968  107152  1185  diguanylate cyclase  YP_003015680  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0083  CDS  NC_012917  107472  108764  1293  C4-dicarboxylate transporter DctA  YP_003015681  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0084  CDS  NC_012917  109118  110635  1518  peptidase M16 domain protein  YP_003015682  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0085  CDS  NC_012917  110988  111155  168  hypothetical protein  YP_003015683  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0086  CDS  NC_012917  111251  112183  933  PfkB domain protein  YP_003015684  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0087  CDS  NC_012917  112331  113347  1017  ribonuclease  YP_003015685  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0088  CDS  NC_012917  113478  114677  1200  major facilitator superfamily transporter  YP_003015686  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0089  CDS  NC_012917  114723  115289  567  hypothetical protein  YP_003015687  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0090  CDS  NC_012917  115346  115492  147  hypothetical protein  YP_003015688  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0091  CDS  NC_012917  115476  116153  678  hypothetical protein  YP_003015689  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0092  CDS  NC_012917  116370  116612  243  sulfur transfer protein SirA  YP_003015690  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0093  CDS  NC_012917  116672  119035  2364  zinc/cadmium/mercury/lead-transporting ATPase  YP_003015691  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0094  CDS  NC_012917  119130  119759  630  YhhN family protein  YP_003015692  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0095  CDS  NC_012917  119951  120271  321  hypothetical protein  YP_003015693  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0096  CDS  NC_012917  120271  120630  360  hypothetical protein  YP_003015694  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0097  CDS  NC_012917  120634  120912  279  hypothetical protein  YP_003015695  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0098  CDS  NC_012917  120939  121514  576  16S rRNA m(2)G966-methyltransferase  YP_003015696  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0099  CDS  NC_012917  121864  123351  1488  cell division protein FtsY  YP_003015697  normal  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
PC1_0100  CDS  NC_012917  123357  124028  672  cell division protein FtsE  YP_003015698  normal  0.578603  n/a    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria 
 
 
-
 
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