| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_B0110 |
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| Symbol | |
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| ID | 5384180 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009705 |
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| Strand | - |
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| Start bp | 121779 |
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| End bp | 122942 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640857219 |
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| Product | type IV secretion system protein DotB |
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| Protein accession | YP_001393408 |
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| Protein GI | 153930695 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR02524] Dot/Icm secretion system ATPase DotB |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 0.0132297 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACCAC TGCATCTTCC AATACTCGAA TTCAAAACTG AATACCGGTA TCCAAGCACT
TTTGAGCACG AAGCTCAGTT TAAGGATACT GTGTTAGAAT TTTTAGCACA TGAAGCCAGT
GATATCATCA TTAAACAAGG TGTAGCAATC TCTGCAAAAG TTAAAGGTAC TTTGTGTACG
CTTAGCACGC GAACATTAAA TTTTAATGAA ATTGAGCGAA TAGCACTATG GGCCAGTGGC
AGTAGTAGTG TTTTGACAGA ACTGGCTAGT AAAAAATTGA TTAACACTCG ATATGAGGTT
TTTCATCCAA CAAAACTCAC TACGGGTGGC CAGAAGCAAC GGTTTGGATA TCGTGTCAAT
ATATCCCCTG TATACATTCA GGGTAAAACC ACAGCCGAGA TTGTTATGCG GTCGATACCT
TTAGACCCCC TCCCCCTTGC TGATATTGGT CTATCTCCTG AGTTGGTTAA TCAAATGTGT
CCAGACAATG GCATCGTTAT GGTTGCGGGT AAAACCTCTT CTGGTAAATC GACGACATTC
TCTTCAATCA TCCGTTACAT TATGGAGAAT GATACGCCGA TCAAGGGGCA TTTGTTGACG
CACGAAGATC CTATTGAGTT TGTCTATGAC AATATTAAAA GTGCTCATTC GATCATTGCT
CAAAGCCAAA TCCCTGAGCA GTTCAGTAGT TTTGCTATTG CAAACCAAGA GGCATTACGT
CGTACTCCAA ACTTAATCAT GATTGGAGAG TTACGCGATA AGCAAAGTAT TGAGTCTGCC
TTTGAAGCTG CTAATACTGG ACATCCTGTT TTTGCTACTG TTCACTCACA AAACTGTTCG
GCGGTAATGC GACGGCTCAT CTCAAGATTT GACGAGTCGG TTCGTGGCGC TGCTATTTAT
GACCTTGTTG AAACAACTCG ATTCATAATG GCTCAAACAC TGGTGCGCAA GACAGATGGC
AATCTTGTCG CAGCAAGAGA GTATCTCAAT TTCACGACTG ATATCCGTGA GCAGTTACTG
TCACTTTCGG ATATGGGCAA AGTTGCTTCT GAAGTTCGTA GGCTGGTTGA TGAGTTTGGA
CATCCCTTCT CTCTTGAAGC TGAAAGGTTA CACAGTGATG GGATCATCGA TGGACATGTG
GCTAAGCGCC TTAGCATGAT GTAA
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| Protein sequence | MEPLHLPILE FKTEYRYPST FEHEAQFKDT VLEFLAHEAS DIIIKQGVAI SAKVKGTLCT
LSTRTLNFNE IERIALWASG SSSVLTELAS KKLINTRYEV FHPTKLTTGG QKQRFGYRVN
ISPVYIQGKT TAEIVMRSIP LDPLPLADIG LSPELVNQMC PDNGIVMVAG KTSSGKSTTF
SSIIRYIMEN DTPIKGHLLT HEDPIEFVYD NIKSAHSIIA QSQIPEQFSS FAIANQEALR
RTPNLIMIGE LRDKQSIESA FEAANTGHPV FATVHSQNCS AVMRRLISRF DESVRGAAIY
DLVETTRFIM AQTLVRKTDG NLVAAREYLN FTTDIREQLL SLSDMGKVAS EVRRLVDEFG
HPFSLEAERL HSDGIIDGHV AKRLSMM
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