Gene YpsIP31758_3970 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_3970 
Symbol 
ID5388246 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand- 
Start bp4451963 
End bp4452568 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content52% 
IMG OID640867001 
Productfimbrial assembly protein PilN 
Protein accessionYP_001402918 
Protein GI153948294 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3166] Tfp pilus assembly protein PilN 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.00698245 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTATCAGG TGAATTTCTT GCCGTGGCGT ATTGCCCGGC AACAGGCTCG CTACCGGTTC 
TGGCGCAATA CCATGCTGAT CCAAGGTATT GGCTTGGCTC TCTATCTGGT GGTGGTGCTA 
ATGCAGGCCC GCAGTGAACA CAAACACCGG CAAGGCACGG CGGCGGCATT ATCACAGCAG 
CAGGCTGCAT TAAGCCAACG TCAACAGCAA GTGCAGCAGG CAATGGCGCA GTTGCAGCGG 
ATAAAACAGC ATATTCAGCG CTACCATCAG GCTCATCAAC CTGCCCGAGG TTACTCCATA 
TTATTGCAAC AGCTATCACA GCAGATCCCT GAACGTTGCT GGCTGATGGC CCTAAGGCAG 
CAAGGTGATG TGCTGTCTTT CGAGGTTATT AGCTGGGATT ACGCCACAAT TAATGCATTT 
TTAGCGATGT TAGGCCGTCA GCCTCTTTTG GTTAATGTGA GCTTGCAGGG GATTACTCAA 
CAGGATGAGG GCGGTTTTCG TTTCGTGGTG CATGCCTCTT GGCGGGACGA AAACCATCAT 
GTAGAAGGCC ATCATGCAGA AGGCCATGAT ATCGACGGTC ATCATGTGGC AGGGGACTAT 
GAATAA
 
Protein sequence
MYQVNFLPWR IARQQARYRF WRNTMLIQGI GLALYLVVVL MQARSEHKHR QGTAAALSQQ 
QAALSQRQQQ VQQAMAQLQR IKQHIQRYHQ AHQPARGYSI LLQQLSQQIP ERCWLMALRQ 
QGDVLSFEVI SWDYATINAF LAMLGRQPLL VNVSLQGITQ QDEGGFRFVV HASWRDENHH 
VEGHHAEGHD IDGHHVAGDY E