| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_3962 |
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| Symbol | rpe |
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| ID | 5388352 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 4444292 |
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| End bp | 4444969 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640866993 |
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| Product | ribulose-phosphate 3-epimerase |
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| Protein accession | YP_001402910 |
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| Protein GI | 153950747 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0036] Pentose-5-phosphate-3-epimerase |
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| TIGRFAM ID | [TIGR01163] ribulose-phosphate 3-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.0524071 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAAAGT ATTTAATTGC CCCCTCTATT CTGTCAGCTG ATTTTGCCCG GCTGGGTGAA
GATACCGCGA AGGTACTCGC CGCAGGTGCT GATATTGTGC ATTTTGACGT GATGGACAAC
CACTATGTTC CTAACCTGAC CATCGGGCCG ATGGTGTGCA AGGCTCTGCG TGATTACGGG
ATCACCGCAC CTATTGATGT GCATCTGATG GTTAAACCGG TTGACCGTAT CGTCCCGGAT
TTCGCCAAAG CCGGTGCAAC CTATATTACA TTCCATCCCG AAGCTTCTGA ACACGTTGAC
CGCACGCTGC AATTGATCAA AGAGAGTGGT TGTAAGGCCG GTCTGGTGTT CAACCCAGCG
ACTCCCCTGA GCTATCTTGA CTATGTGATG GATAAGCTGG ATGTCATTTT GCTGATGTCA
GTTAACCCCG GTTTCGGTGG TCAATCGTTT ATTCCTGAAA CCCTGAATAA GCTGCGTCAG
GTGCGTAAGT TGATTGATGA CAGCGGTTAT GACATCCGTT TGGAAGTGGA CGGCGGTGTT
AAGGTTGAGA ATATTCGCCA AATAGCCGCA GCAGGTGCCG ATATGTTTGT TGCTGGCTCC
GCGATTTTCA ATCAACCCGA TTATGCTGCG GTGATCGATG CCATGCGCAA TGAACTGGCG
ATGGCGGCTA ATGGTTAA
|
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| Protein sequence | MKKYLIAPSI LSADFARLGE DTAKVLAAGA DIVHFDVMDN HYVPNLTIGP MVCKALRDYG
ITAPIDVHLM VKPVDRIVPD FAKAGATYIT FHPEASEHVD RTLQLIKESG CKAGLVFNPA
TPLSYLDYVM DKLDVILLMS VNPGFGGQSF IPETLNKLRQ VRKLIDDSGY DIRLEVDGGV
KVENIRQIAA AGADMFVAGS AIFNQPDYAA VIDAMRNELA MAANG
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